RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 PRG4Q92954 1404 aaPredicted RBP32.8■■■□□ 2.84
CCDC88B-206ENST00000473405 JPH4Q96JJ6 628 aa32.73■■■□□ 2.83
CCDC88B-206ENST00000473405 KIAA0586Q9BVV6 1533 aa32.68■■■□□ 2.82
CCDC88B-206ENST00000473405 CARMIL1Q5VZK9 1371 aa32.59■■■□□ 2.81
CCDC88B-206ENST00000473405 KIF13AQ9H1H9 1805 aa32.53■■■□□ 2.8
CCDC88B-206ENST00000473405 ADCY10Q96PN6 1610 aa32.51■■■□□ 2.8
CCDC88B-206ENST00000473405 IQGAP2Q13576 1575 aa32.46■■■□□ 2.79
CCDC88B-206ENST00000473405 MAPKBP1O60336 1514 aa32.4■■■□□ 2.78
CCDC88B-206ENST00000473405 RAPGEF2Q9Y4G8 1499 aa32.36■■■□□ 2.77
CCDC88B-206ENST00000473405 CARMIL2Q6F5E8 1435 aa32.3■■■□□ 2.76
CCDC88B-206ENST00000473405 DIP2BQ9P265 1576 aa32.3■■■□□ 2.76
CCDC88B-206ENST00000473405 ABCC10Q5T3U5 1492 aa32.29■■■□□ 2.76
CCDC88B-206ENST00000473405 PTPRGP23470 1445 aa32.28■■■□□ 2.76
CCDC88B-206ENST00000473405 DISP1Q96F81 1524 aa32.28■■■□□ 2.76
CCDC88B-206ENST00000473405 TNIKQ9UKE5 1360 aa32.26■■■□□ 2.75
CCDC88B-206ENST00000473405 NPM1P06748 294 aaKnown RBP eCLIP32.25■■■□□ 2.75
CCDC88B-206ENST00000473405 UGGT2Q9NYU1 1516 aa32.25■■■□□ 2.75
CCDC88B-206ENST00000473405 CTTNBP2Q8WZ74 1663 aa32.24■■■□□ 2.75
CCDC88B-206ENST00000473405 KIAA0556O60303 1618 aa32.18■■■□□ 2.74
CCDC88B-206ENST00000473405 ABCC2Q92887 1545 aa32.16■■■□□ 2.74
CCDC88B-206ENST00000473405 FAM69CQ0P6D2 419 aa32.15■■■□□ 2.74
CCDC88B-206ENST00000473405 TTBK1Q5TCY1 1321 aaPredicted RBP32.14■■■□□ 2.74
CCDC88B-206ENST00000473405 UHRF1BP1LA0JNW5 1464 aa32.13■■■□□ 2.73
CCDC88B-206ENST00000473405 PRXQ9BXM0 1461 aa32.12■■■□□ 2.73
CCDC88B-206ENST00000473405 UACAQ9BZF9 1416 aa32.08■■■□□ 2.73
CCDC88B-206ENST00000473405 TSPOAP1O95153 1857 aa32.05■■■□□ 2.72
CCDC88B-206ENST00000473405 ASXL2Q76L83 1435 aa32■■■□□ 2.71
CCDC88B-206ENST00000473405 ZCCHC11Q5TAX3 1644 aaKnown RBP31.99■■■□□ 2.71
CCDC88B-206ENST00000473405 KDM5BQ9UGL1 1544 aa31.99■■■□□ 2.71
CCDC88B-206ENST00000473405 PLB1Q6P1J6 1458 aa31.97■■■□□ 2.71
CCDC88B-206ENST00000473405 GLI2P10070 1586 aa31.95■■■□□ 2.71
CCDC88B-206ENST00000473405 GOLGA3Q08378 1498 aa31.94■■■□□ 2.7
CCDC88B-206ENST00000473405 KDM6BO15054 1643 aa31.93■■■□□ 2.7
CCDC88B-206ENST00000473405 PPRC1Q5VV67 1664 aaKnown RBP31.92■■■□□ 2.7
CCDC88B-206ENST00000473405 ABCA8O94911 1581 aa31.86■■■□□ 2.69
CCDC88B-206ENST00000473405 EPRSP07814 1512 aaKnown RBP31.84■■■□□ 2.69
CCDC88B-206ENST00000473405 MAP3K4Q9Y6R4 1608 aa31.83■■■□□ 2.69
CCDC88B-206ENST00000473405 CSRNP3Q8WYN3 585 aa31.79■■■□□ 2.68
CCDC88B-206ENST00000473405 EEA1Q15075 1411 aa31.78■■■□□ 2.68
CCDC88B-206ENST00000473405 SAMD9Q5K651 1589 aa31.77■■■□□ 2.68
CCDC88B-206ENST00000473405 AEBP2Q6ZN18 517 aaPredicted RBP31.76■■■□□ 2.67
CCDC88B-206ENST00000473405 WDR7Q9Y4E6 1490 aa31.75■■■□□ 2.67
CCDC88B-206ENST00000473405 KIF21BO75037 1637 aa31.62■■■□□ 2.65
CCDC88B-206ENST00000473405 CFAP43Q8NDM7 1665 aa31.61■■■□□ 2.65
CCDC88B-206ENST00000473405 TEX14Q8IWB6 1497 aa31.61■■■□□ 2.65
CCDC88B-206ENST00000473405 P3H3Q8IVL6 736 aa31.59■■■□□ 2.65
CCDC88B-206ENST00000473405 COL17A1Q9UMD9 1497 aaPredicted RBP31.59■■■□□ 2.65
CCDC88B-206ENST00000473405 RAPGEF6Q8TEU7 1601 aa31.56■■■□□ 2.64
CCDC88B-206ENST00000473405 ATP10BO94823 1461 aa31.53■■■□□ 2.64
CCDC88B-206ENST00000473405 FAM9AQ8IZU1 332 aaPredicted RBP31.53■■■□□ 2.64
CCDC88B-206ENST00000473405 MAGI3Q5TCQ9 1506 aa31.5■■■□□ 2.63
CCDC88B-206ENST00000473405 CD109Q6YHK3 1445 aa31.48■■■□□ 2.63
CCDC88B-206ENST00000473405 ARID3CA6NKF2 412 aa31.45■■■□□ 2.63
CCDC88B-206ENST00000473405 FHOD3Q2V2M9 1422 aa31.45■■■□□ 2.63
CCDC88B-206ENST00000473405 KCNH8Q96L42 1107 aa31.45■■■□□ 2.63
CCDC88B-206ENST00000473405 EFCAB5A4FU69 1503 aa31.44■■■□□ 2.62
CCDC88B-206ENST00000473405 NUP153P49790 1475 aaKnown RBP31.43■■■□□ 2.62
CCDC88B-206ENST00000473405 KDM4FA0A1W2PPD8 638 aa31.42■■■□□ 2.62
CCDC88B-206ENST00000473405 CHIC1Q5VXU3 224 aa31.41■■■□□ 2.62
CCDC88B-206ENST00000473405 ABCA9Q8IUA7 1624 aa31.41■■■□□ 2.62
CCDC88B-206ENST00000473405 RANGAP1P46060 587 aaPredicted RBP31.39■■■□□ 2.62
CCDC88B-206ENST00000473405 ADGRL1O94910 1474 aa31.3■■■□□ 2.6
CCDC88B-206ENST00000473405 ARAP3Q8WWN8 1544 aa31.26■■■□□ 2.59
CCDC88B-206ENST00000473405 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP31.2■■■□□ 2.59
CCDC88B-206ENST00000473405 HNRNPUL2Q1KMD3 747 aaKnown RBP31.2■■■□□ 2.59
CCDC88B-206ENST00000473405 EHMT2Q96KQ7 1210 aa31.19■■■□□ 2.58
CCDC88B-206ENST00000473405 ARHGAP35Q9NRY4 1499 aa31.16■■■□□ 2.58
CCDC88B-206ENST00000473405 UBTFP17480 764 aaKnown RBP31.15■■■□□ 2.58
CCDC88B-206ENST00000473405 NEO1Q92859 1461 aa31.14■■■□□ 2.58
CCDC88B-206ENST00000473405 CDK13Q14004 1512 aaKnown RBP31.14■■■□□ 2.58
CCDC88B-206ENST00000473405 PHLDB1Q86UU1 1377 aa31.13■■■□□ 2.57
CCDC88B-206ENST00000473405 FRMPD1Q5SYB0 1578 aa31.11■■■□□ 2.57
CCDC88B-206ENST00000473405 TTC37Q6PGP7 1564 aa31.11■■■□□ 2.57
CCDC88B-206ENST00000473405 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP31.1■■■□□ 2.57
CCDC88B-206ENST00000473405 HECW1Q76N89 1606 aa31.09■■■□□ 2.57
CCDC88B-206ENST00000473405 FMN1Q68DA7 1419 aa31.07■■■□□ 2.57
CCDC88B-206ENST00000473405 PLEKHD1A6NEE1 506 aa31.06■■■□□ 2.56
CCDC88B-206ENST00000473405 CFAP74Q9C0B2 1584 aa31.04■■■□□ 2.56
CCDC88B-206ENST00000473405 LRRIQ1Q96JM4 1722 aa31.02■■■□□ 2.56
CCDC88B-206ENST00000473405 RICTORQ6R327 1708 aa31.01■■■□□ 2.55
CCDC88B-206ENST00000473405 RAPGEF3O95398 923 aa30.99■■■□□ 2.55
CCDC88B-206ENST00000473405 FANCAO15360 1455 aa30.97■■■□□ 2.55
CCDC88B-206ENST00000473405 AKNAQ7Z591 1439 aa30.93■■■□□ 2.54
CCDC88B-206ENST00000473405 ARHGEF40Q8TER5 1519 aa30.91■■■□□ 2.54
CCDC88B-206ENST00000473405 KIF14Q15058 1648 aa30.91■■■□□ 2.54
CCDC88B-206ENST00000473405 MYO5CQ9NQX4 1742 aa30.9■■■□□ 2.54
CCDC88B-206ENST00000473405 DENND4BO75064 1496 aaPredicted RBP30.89■■■□□ 2.54
CCDC88B-206ENST00000473405 PCF11O94913 1555 aaKnown RBP30.89■■■□□ 2.54
CCDC88B-206ENST00000473405 ADAMTSL3P82987 1691 aa30.87■■■□□ 2.53
CCDC88B-206ENST00000473405 ATP1B4Q9UN42 357 aaPredicted RBP30.86■■■□□ 2.53
CCDC88B-206ENST00000473405 ZMYM4Q5VZL5 1548 aa30.86■■■□□ 2.53
CCDC88B-206ENST00000473405 PLCH2O75038 1416 aa30.84■■■□□ 2.53
CCDC88B-206ENST00000473405 BCORL1Q5H9F3 1711 aa30.84■■■□□ 2.53
CCDC88B-206ENST00000473405 HECW2Q9P2P5 1572 aa30.83■■■□□ 2.53
CCDC88B-206ENST00000473405 TROQ12816 1431 aaPredicted RBP30.81■■■□□ 2.52
CCDC88B-206ENST00000473405 CASKIN1Q8WXD9 1431 aa30.8■■■□□ 2.52
CCDC88B-206ENST00000473405 CDK11AQ9UQ88 783 aaPredicted RBP30.77■■■□□ 2.52
CCDC88B-206ENST00000473405 SIGLEC1Q9BZZ2 1709 aa30.76■■■□□ 2.52
CCDC88B-206ENST00000473405 POGZQ7Z3K3 1410 aa30.75■■■□□ 2.51
CCDC88B-206ENST00000473405 ZFYVE16Q7Z3T8 1539 aa30.75■■■□□ 2.51
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms