RNA–Protein interactions for RNA: ENST00000473036.2

TPM3-216, Transcript of tropomyosin 3, humanhuman

TSL 2

Gene TPM3, Length 746 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-216ENST00000473036 SHROOM2Q13796 1616 aa22.25■■□□□ 1.15
TPM3-216ENST00000473036 ERCC6L2Q5T890 1561 aa22.21■■□□□ 1.15
TPM3-216ENST00000473036 CARMIL1Q5VZK9 1371 aa22.21■■□□□ 1.15
TPM3-216ENST00000473036 PRXQ9BXM0 1461 aa22.09■■□□□ 1.13
TPM3-216ENST00000473036 RAPGEF2Q9Y4G8 1499 aa22.08■■□□□ 1.12
TPM3-216ENST00000473036 PRG4Q92954 1404 aaPredicted RBP22.07■■□□□ 1.12
TPM3-216ENST00000473036 JPH4Q96JJ6 628 aa22.06■■□□□ 1.12
TPM3-216ENST00000473036 KIF13AQ9H1H9 1805 aa22.03■■□□□ 1.12
TPM3-216ENST00000473036 KIAA0586Q9BVV6 1533 aa22.03■■□□□ 1.12
TPM3-216ENST00000473036 CSRNP3Q8WYN3 585 aa22.02■■□□□ 1.12
TPM3-216ENST00000473036 FAM9AQ8IZU1 332 aaPredicted RBP22.01■■□□□ 1.11
TPM3-216ENST00000473036 MAPKBP1O60336 1514 aa22■■□□□ 1.11
TPM3-216ENST00000473036 ABCC10Q5T3U5 1492 aa21.99■■□□□ 1.11
TPM3-216ENST00000473036 EEA1Q15075 1411 aa21.98■■□□□ 1.11
TPM3-216ENST00000473036 NPM1P06748 294 aaKnown RBP eCLIP21.98■■□□□ 1.11
TPM3-216ENST00000473036 FAM69CQ0P6D2 419 aa21.92■■□□□ 1.1
TPM3-216ENST00000473036 IQGAP2Q13576 1575 aa21.91■■□□□ 1.1
TPM3-216ENST00000473036 CTTNBP2Q8WZ74 1663 aa21.89■■□□□ 1.1
TPM3-216ENST00000473036 DIP2BQ9P265 1576 aa21.88■■□□□ 1.09
TPM3-216ENST00000473036 ADCY10Q96PN6 1610 aa21.86■■□□□ 1.09
TPM3-216ENST00000473036 KIF21BO75037 1637 aa21.84■■□□□ 1.09
TPM3-216ENST00000473036 DISP1Q96F81 1524 aa21.84■■□□□ 1.09
TPM3-216ENST00000473036 UGGT2Q9NYU1 1516 aa21.84■■□□□ 1.09
TPM3-216ENST00000473036 KDM6BO15054 1643 aa21.78■■□□□ 1.08
TPM3-216ENST00000473036 KIAA0556O60303 1618 aa21.75■■□□□ 1.07
TPM3-216ENST00000473036 EHMT2Q96KQ7 1210 aa21.74■■□□□ 1.07
TPM3-216ENST00000473036 PTPRGP23470 1445 aa21.72■■□□□ 1.07
TPM3-216ENST00000473036 CARMIL2Q6F5E8 1435 aa21.72■■□□□ 1.07
TPM3-216ENST00000473036 TNIKQ9UKE5 1360 aa21.71■■□□□ 1.07
TPM3-216ENST00000473036 GOLGA3Q08378 1498 aa21.68■■□□□ 1.06
TPM3-216ENST00000473036 ABCC2Q92887 1545 aa21.68■■□□□ 1.06
TPM3-216ENST00000473036 TTBK1Q5TCY1 1321 aaPredicted RBP21.67■■□□□ 1.06
TPM3-216ENST00000473036 KDM4FA0A1W2PPD8 638 aa21.67■■□□□ 1.06
TPM3-216ENST00000473036 PLB1Q6P1J6 1458 aa21.66■■□□□ 1.06
TPM3-216ENST00000473036 SAMD9Q5K651 1589 aa21.65■■□□□ 1.06
TPM3-216ENST00000473036 GLI2P10070 1586 aa21.65■■□□□ 1.06
TPM3-216ENST00000473036 UHRF1BP1LA0JNW5 1464 aa21.64■■□□□ 1.05
TPM3-216ENST00000473036 TSPOAP1O95153 1857 aa21.6■■□□□ 1.05
TPM3-216ENST00000473036 P3H3Q8IVL6 736 aa21.6■■□□□ 1.05
TPM3-216ENST00000473036 UBTFP17480 764 aaKnown RBP21.59■■□□□ 1.05
TPM3-216ENST00000473036 RANGAP1P46060 587 aaPredicted RBP21.59■■□□□ 1.05
TPM3-216ENST00000473036 ASXL2Q76L83 1435 aa21.59■■□□□ 1.05
TPM3-216ENST00000473036 UACAQ9BZF9 1416 aa21.55■■□□□ 1.04
TPM3-216ENST00000473036 ABCA8O94911 1581 aa21.53■■□□□ 1.04
TPM3-216ENST00000473036 FHOD3Q2V2M9 1422 aa21.52■■□□□ 1.04
TPM3-216ENST00000473036 PPRC1Q5VV67 1664 aaKnown RBP21.51■■□□□ 1.03
TPM3-216ENST00000473036 TEX14Q8IWB6 1497 aa21.51■■□□□ 1.03
TPM3-216ENST00000473036 KDM5BQ9UGL1 1544 aa21.5■■□□□ 1.03
TPM3-216ENST00000473036 ARHGAP35Q9NRY4 1499 aa21.48■■□□□ 1.03
TPM3-216ENST00000473036 EFCAB5A4FU69 1503 aa21.48■■□□□ 1.03
TPM3-216ENST00000473036 EPRSP07814 1512 aaKnown RBP21.47■■□□□ 1.03
TPM3-216ENST00000473036 MAP3K4Q9Y6R4 1608 aa21.46■■□□□ 1.03
TPM3-216ENST00000473036 ADGRL1O94910 1474 aa21.45■■□□□ 1.02
TPM3-216ENST00000473036 ZCCHC11Q5TAX3 1644 aaKnown RBP21.44■■□□□ 1.02
TPM3-216ENST00000473036 LOC105371045A0A1W2PR82 267 aa21.43■■□□□ 1.02
TPM3-216ENST00000473036 RAPGEF6Q8TEU7 1601 aa21.39■■□□□ 1.01
TPM3-216ENST00000473036 COL17A1Q9UMD9 1497 aaPredicted RBP21.39■■□□□ 1.01
TPM3-216ENST00000473036 ATP10BO94823 1461 aa21.35■■□□□ 1.01
TPM3-216ENST00000473036 NUP153P49790 1475 aaKnown RBP21.35■■□□□ 1.01
TPM3-216ENST00000473036 WDR7Q9Y4E6 1490 aa21.35■■□□□ 1.01
TPM3-216ENST00000473036 ARID3CA6NKF2 412 aa21.34■■□□□ 1.01
TPM3-216ENST00000473036 ILDR1Q86SU0 546 aaPredicted RBP21.34■■□□□ 1.01
TPM3-216ENST00000473036 MAGI3Q5TCQ9 1506 aa21.31■■□□□ 1
TPM3-216ENST00000473036 CLIP1P30622 1438 aa21.3■■□□□ 1
TPM3-216ENST00000473036 CFAP43Q8NDM7 1665 aa21.26■□□□□ 0.99
TPM3-216ENST00000473036 CEP162Q5TB80 1403 aa21.26■□□□□ 0.99
TPM3-216ENST00000473036 FMN1Q68DA7 1419 aa21.26■□□□□ 0.99
TPM3-216ENST00000473036 CD109Q6YHK3 1445 aa21.25■□□□□ 0.99
TPM3-216ENST00000473036 HECW2Q9P2P5 1572 aa21.25■□□□□ 0.99
TPM3-216ENST00000473036 LRRIQ1Q96JM4 1722 aa21.24■□□□□ 0.99
TPM3-216ENST00000473036 CDK13Q14004 1512 aaKnown RBP21.22■□□□□ 0.99
TPM3-216ENST00000473036 PCF11O94913 1555 aaKnown RBP21.2■□□□□ 0.98
TPM3-216ENST00000473036 HECW1Q76N89 1606 aa21.18■□□□□ 0.98
TPM3-216ENST00000473036 CASKIN1Q8WXD9 1431 aa21.16■□□□□ 0.98
TPM3-216ENST00000473036 PHLDB1Q86UU1 1377 aa21.16■□□□□ 0.98
TPM3-216ENST00000473036 KCNH8Q96L42 1107 aa21.16■□□□□ 0.98
TPM3-216ENST00000473036 ARAP3Q8WWN8 1544 aa21.15■□□□□ 0.98
TPM3-216ENST00000473036 ATP1B4Q9UN42 357 aaPredicted RBP21.14■□□□□ 0.97
TPM3-216ENST00000473036 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.13■□□□□ 0.97
TPM3-216ENST00000473036 HNRNPUL2Q1KMD3 747 aaKnown RBP21.13■□□□□ 0.97
TPM3-216ENST00000473036 FYCO1Q9BQS8 1478 aa21.09■□□□□ 0.97
TPM3-216ENST00000473036 ABCA9Q8IUA7 1624 aa21.07■□□□□ 0.96
TPM3-216ENST00000473036 PLEKHD1A6NEE1 506 aa21.05■□□□□ 0.96
TPM3-216ENST00000473036 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.02■□□□□ 0.963e-7■□□□□ 8.5
TPM3-216ENST00000473036 CCDC18Q5T9S5 1454 aa21.01■□□□□ 0.95
TPM3-216ENST00000473036 NEO1Q92859 1461 aa21.01■□□□□ 0.95
TPM3-216ENST00000473036 TTC37Q6PGP7 1564 aa21.01■□□□□ 0.95
TPM3-216ENST00000473036 KIF14Q15058 1648 aa21■□□□□ 0.95
TPM3-216ENST00000473036 TROQ12816 1431 aaPredicted RBP20.98■□□□□ 0.95
TPM3-216ENST00000473036 VPS8Q8N3P4 1428 aa20.97■□□□□ 0.95
TPM3-216ENST00000473036 FBXO41Q8TF61 875 aa20.97■□□□□ 0.95
TPM3-216ENST00000473036 ADAMTSL3P82987 1691 aa20.96■□□□□ 0.95
TPM3-216ENST00000473036 PTPRMP28827 1452 aa20.95■□□□□ 0.94
TPM3-216ENST00000473036 CDK11AQ9UQ88 783 aaPredicted RBP20.93■□□□□ 0.94
TPM3-216ENST00000473036 RAPGEF3O95398 923 aa20.87■□□□□ 0.93
TPM3-216ENST00000473036 BCORL1Q5H9F3 1711 aa20.87■□□□□ 0.93
TPM3-216ENST00000473036 PLCH2O75038 1416 aa20.86■□□□□ 0.93
TPM3-216ENST00000473036 TIAM1Q13009 1591 aa20.85■□□□□ 0.93
TPM3-216ENST00000473036 MYO5CQ9NQX4 1742 aa20.85■□□□□ 0.93
TPM3-216ENST00000473036 FRMPD1Q5SYB0 1578 aa20.85■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms