RNA–Protein interactions for RNA: ENST00000472789.1

SMARCD3-208, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 2

Gene SMARCD3, Length 863 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-208ENST00000472789 NUP160Q12769 1436 aa17.47■□□□□ 0.39
SMARCD3-208ENST00000472789 CSRNP3Q8WYN3 585 aa17.47■□□□□ 0.39
SMARCD3-208ENST00000472789 EEA1Q15075 1411 aa17.46■□□□□ 0.39
SMARCD3-208ENST00000472789 RAPGEF2Q9Y4G8 1499 aa17.45■□□□□ 0.38
SMARCD3-208ENST00000472789 AEBP2Q6ZN18 517 aaPredicted RBP17.44■□□□□ 0.38
SMARCD3-208ENST00000472789 ERCC6L2Q5T890 1561 aa17.38■□□□□ 0.37
SMARCD3-208ENST00000472789 PRXQ9BXM0 1461 aa17.37■□□□□ 0.37
SMARCD3-208ENST00000472789 EHMT2Q96KQ7 1210 aa17.37■□□□□ 0.37
SMARCD3-208ENST00000472789 KIAA0586Q9BVV6 1533 aa17.37■□□□□ 0.37
SMARCD3-208ENST00000472789 JPH4Q96JJ6 628 aa17.36■□□□□ 0.37
SMARCD3-208ENST00000472789 PRG4Q92954 1404 aaPredicted RBP17.32■□□□□ 0.36
SMARCD3-208ENST00000472789 SHROOM2Q13796 1616 aa17.29■□□□□ 0.36
SMARCD3-208ENST00000472789 IQGAP2Q13576 1575 aa17.29■□□□□ 0.36
SMARCD3-208ENST00000472789 KIF21BO75037 1637 aa17.25■□□□□ 0.35
SMARCD3-208ENST00000472789 TTBK1Q5TCY1 1321 aaPredicted RBP17.24■□□□□ 0.35
SMARCD3-208ENST00000472789 UBTFP17480 764 aaKnown RBP17.24■□□□□ 0.35
SMARCD3-208ENST00000472789 CTTNBP2Q8WZ74 1663 aa17.23■□□□□ 0.35
SMARCD3-208ENST00000472789 RANGAP1P46060 587 aaPredicted RBP17.23■□□□□ 0.35
SMARCD3-208ENST00000472789 CARMIL2Q6F5E8 1435 aa17.21■□□□□ 0.35
SMARCD3-208ENST00000472789 GOLGA3Q08378 1498 aa17.2■□□□□ 0.34
SMARCD3-208ENST00000472789 KIF13AQ9H1H9 1805 aa17.19■□□□□ 0.34
SMARCD3-208ENST00000472789 UGGT2Q9NYU1 1516 aa17.16■□□□□ 0.34
SMARCD3-208ENST00000472789 DISP1Q96F81 1524 aa17.14■□□□□ 0.33
SMARCD3-208ENST00000472789 TNIKQ9UKE5 1360 aa17.14■□□□□ 0.33
SMARCD3-208ENST00000472789 PTPRGP23470 1445 aa17.13■□□□□ 0.33
SMARCD3-208ENST00000472789 P3H3Q8IVL6 736 aa17.13■□□□□ 0.33
SMARCD3-208ENST00000472789 KIAA0556O60303 1618 aa17.11■□□□□ 0.33
SMARCD3-208ENST00000472789 ABCC10Q5T3U5 1492 aa17.05■□□□□ 0.32
SMARCD3-208ENST00000472789 FAM69CQ0P6D2 419 aa17.05■□□□□ 0.32
SMARCD3-208ENST00000472789 NPM1P06748 294 aaKnown RBP eCLIP17.04■□□□□ 0.32
SMARCD3-208ENST00000472789 MAPKBP1O60336 1514 aa17.01■□□□□ 0.31
SMARCD3-208ENST00000472789 LOC105371045A0A1W2PR82 267 aa17.01■□□□□ 0.31
SMARCD3-208ENST00000472789 SAMD9Q5K651 1589 aa17.01■□□□□ 0.31
SMARCD3-208ENST00000472789 DIP2BQ9P265 1576 aa17.01■□□□□ 0.31
SMARCD3-208ENST00000472789 ADCY10Q96PN6 1610 aa17■□□□□ 0.31
SMARCD3-208ENST00000472789 FHOD3Q2V2M9 1422 aa17■□□□□ 0.31
SMARCD3-208ENST00000472789 UACAQ9BZF9 1416 aa17■□□□□ 0.31
SMARCD3-208ENST00000472789 EFCAB5A4FU69 1503 aa16.98■□□□□ 0.31
SMARCD3-208ENST00000472789 PLB1Q6P1J6 1458 aa16.97■□□□□ 0.31
SMARCD3-208ENST00000472789 KDM4FA0A1W2PPD8 638 aa16.95■□□□□ 0.3
SMARCD3-208ENST00000472789 ARID3CA6NKF2 412 aa16.95■□□□□ 0.3
SMARCD3-208ENST00000472789 ABCC2Q92887 1545 aa16.95■□□□□ 0.3
SMARCD3-208ENST00000472789 UHRF1BP1LA0JNW5 1464 aa16.93■□□□□ 0.3
SMARCD3-208ENST00000472789 ARHGAP35Q9NRY4 1499 aa16.93■□□□□ 0.3
SMARCD3-208ENST00000472789 CLIP1P30622 1438 aa16.92■□□□□ 0.3
SMARCD3-208ENST00000472789 KDM6BO15054 1643 aa16.92■□□□□ 0.3
SMARCD3-208ENST00000472789 ABCA8O94911 1581 aa16.9■□□□□ 0.3
SMARCD3-208ENST00000472789 ATP1B4Q9UN42 357 aaPredicted RBP16.9■□□□□ 0.3
SMARCD3-208ENST00000472789 TSPOAP1O95153 1857 aa16.9■□□□□ 0.3
SMARCD3-208ENST00000472789 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.88■□□□□ 0.29
SMARCD3-208ENST00000472789 HNRNPUL2Q1KMD3 747 aaKnown RBP16.88■□□□□ 0.29
SMARCD3-208ENST00000472789 CEP162Q5TB80 1403 aa16.87■□□□□ 0.29
SMARCD3-208ENST00000472789 RAPGEF6Q8TEU7 1601 aa16.86■□□□□ 0.29
SMARCD3-208ENST00000472789 FMN1Q68DA7 1419 aa16.86■□□□□ 0.29
SMARCD3-208ENST00000472789 KDM5BQ9UGL1 1544 aa16.86■□□□□ 0.29
SMARCD3-208ENST00000472789 ZCCHC11Q5TAX3 1644 aaKnown RBP16.84■□□□□ 0.29
SMARCD3-208ENST00000472789 ASXL2Q76L83 1435 aa16.83■□□□□ 0.28
SMARCD3-208ENST00000472789 NUP153P49790 1475 aaKnown RBP16.8■□□□□ 0.28
SMARCD3-208ENST00000472789 ATP10BO94823 1461 aa16.8■□□□□ 0.28
SMARCD3-208ENST00000472789 KCNH8Q96L42 1107 aa16.78■□□□□ 0.28
SMARCD3-208ENST00000472789 PPRC1Q5VV67 1664 aaKnown RBP16.78■□□□□ 0.28
SMARCD3-208ENST00000472789 WDR7Q9Y4E6 1490 aa16.75■□□□□ 0.27
SMARCD3-208ENST00000472789 HECW1Q76N89 1606 aa16.75■□□□□ 0.27
SMARCD3-208ENST00000472789 GLI2P10070 1586 aa16.74■□□□□ 0.27
SMARCD3-208ENST00000472789 ILDR1Q86SU0 546 aaPredicted RBP16.74■□□□□ 0.27
SMARCD3-208ENST00000472789 PCF11O94913 1555 aaKnown RBP16.73■□□□□ 0.27
SMARCD3-208ENST00000472789 CASKIN1Q8WXD9 1431 aa16.73■□□□□ 0.27
SMARCD3-208ENST00000472789 PLEKHD1A6NEE1 506 aa16.73■□□□□ 0.27
SMARCD3-208ENST00000472789 CDK13Q14004 1512 aaKnown RBP16.73■□□□□ 0.27
SMARCD3-208ENST00000472789 COL17A1Q9UMD9 1497 aaPredicted RBP16.71■□□□□ 0.27
SMARCD3-208ENST00000472789 EPRSP07814 1512 aaKnown RBP16.7■□□□□ 0.26
SMARCD3-208ENST00000472789 ADGRL1O94910 1474 aa16.7■□□□□ 0.26
SMARCD3-208ENST00000472789 FYCO1Q9BQS8 1478 aa16.69■□□□□ 0.26
SMARCD3-208ENST00000472789 CDK11AQ9UQ88 783 aaPredicted RBP16.69■□□□□ 0.26
SMARCD3-208ENST00000472789 MAP3K4Q9Y6R4 1608 aa16.65■□□□□ 0.26
SMARCD3-208ENST00000472789 CCDC18Q5T9S5 1454 aa16.65■□□□□ 0.26
SMARCD3-208ENST00000472789 VPS8Q8N3P4 1428 aa16.63■□□□□ 0.25
SMARCD3-208ENST00000472789 LRRIQ1Q96JM4 1722 aa16.62■□□□□ 0.25
SMARCD3-208ENST00000472789 CD109Q6YHK3 1445 aa16.61■□□□□ 0.25
SMARCD3-208ENST00000472789 TROQ12816 1431 aaPredicted RBP16.58■□□□□ 0.24
SMARCD3-208ENST00000472789 TEX14Q8IWB6 1497 aa16.58■□□□□ 0.24
SMARCD3-208ENST00000472789 HECW2Q9P2P5 1572 aa16.58■□□□□ 0.24
SMARCD3-208ENST00000472789 CFAP43Q8NDM7 1665 aa16.56■□□□□ 0.24
SMARCD3-208ENST00000472789 APLP2Q06481 763 aa16.56■□□□□ 0.24
SMARCD3-208ENST00000472789 MTUS2Q5JR59 1369 aa16.55■□□□□ 0.24
SMARCD3-208ENST00000472789 ABCA9Q8IUA7 1624 aa16.55■□□□□ 0.24
SMARCD3-208ENST00000472789 KIF14Q15058 1648 aa16.54■□□□□ 0.24
SMARCD3-208ENST00000472789 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.53■□□□□ 0.24
SMARCD3-208ENST00000472789 MAGI3Q5TCQ9 1506 aa16.52■□□□□ 0.24
SMARCD3-208ENST00000472789 TTC37Q6PGP7 1564 aa16.51■□□□□ 0.23
SMARCD3-208ENST00000472789 TIAM1Q13009 1591 aa16.48■□□□□ 0.23
SMARCD3-208ENST00000472789 EHBP1L1Q8N3D4 1523 aa16.46■□□□□ 0.23
SMARCD3-208ENST00000472789 PLCH2O75038 1416 aa16.45■□□□□ 0.22
SMARCD3-208ENST00000472789 FANCAO15360 1455 aa16.44■□□□□ 0.22
SMARCD3-208ENST00000472789 KANK4Q5T7N3 995 aaPredicted RBP16.44■□□□□ 0.22
SMARCD3-208ENST00000472789 EFCAB2Q5VUJ9 269 aa16.44■□□□□ 0.22
SMARCD3-208ENST00000472789 CCNB3Q8WWL7 1395 aa16.43■□□□□ 0.22
SMARCD3-208ENST00000472789 MYO5CQ9NQX4 1742 aa16.43■□□□□ 0.22
SMARCD3-208ENST00000472789 ARHGAP5Q13017 1502 aa16.43■□□□□ 0.22
SMARCD3-208ENST00000472789 LRRC9Q6ZRR7 1453 aa16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms