RNA–Protein interactions for RNA: ENST00000471037.1

SF3A1-206, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 3

Gene SF3A1, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-206ENST00000471037 KIF13AQ9H1H9 1805 aa16.01■□□□□ 0.15
SF3A1-206ENST00000471037 MAPKBP1O60336 1514 aa15.96■□□□□ 0.15
SF3A1-206ENST00000471037 KIAA0586Q9BVV6 1533 aa15.96■□□□□ 0.15
SF3A1-206ENST00000471037 CUL7Q14999 1698 aa15.95■□□□□ 0.14
SF3A1-206ENST00000471037 IGF1RP08069 1367 aa15.95■□□□□ 0.14
SF3A1-206ENST00000471037 ABCC10Q5T3U5 1492 aa15.95■□□□□ 0.14
SF3A1-206ENST00000471037 KIF27Q86VH2 1401 aa15.94■□□□□ 0.14
SF3A1-206ENST00000471037 ADCY10Q96PN6 1610 aa15.92■□□□□ 0.14
SF3A1-206ENST00000471037 DIP2BQ9P265 1576 aa15.91■□□□□ 0.14
SF3A1-206ENST00000471037 NPM1P06748 294 aaKnown RBP eCLIP15.89■□□□□ 0.13
SF3A1-206ENST00000471037 FAM69CQ0P6D2 419 aa15.88■□□□□ 0.13
SF3A1-206ENST00000471037 CARMIL1Q5VZK9 1371 aa15.83■□□□□ 0.12
SF3A1-206ENST00000471037 PTPRGP23470 1445 aa15.8■□□□□ 0.12
SF3A1-206ENST00000471037 CHIC1Q5VXU3 224 aa15.8■□□□□ 0.12
SF3A1-206ENST00000471037 CARMIL2Q6F5E8 1435 aa15.79■□□□□ 0.12
SF3A1-206ENST00000471037 IQGAP2Q13576 1575 aa15.79■□□□□ 0.12
SF3A1-206ENST00000471037 TNIKQ9UKE5 1360 aa15.78■□□□□ 0.12
SF3A1-206ENST00000471037 KDM6BO15054 1643 aa15.78■□□□□ 0.12
SF3A1-206ENST00000471037 ABCC2Q92887 1545 aa15.78■□□□□ 0.12
SF3A1-206ENST00000471037 UHRF1BP1LA0JNW5 1464 aa15.74■□□□□ 0.11
SF3A1-206ENST00000471037 DISP1Q96F81 1524 aa15.72■□□□□ 0.11
SF3A1-206ENST00000471037 PLB1Q6P1J6 1458 aa15.71■□□□□ 0.11
SF3A1-206ENST00000471037 GLI2P10070 1586 aa15.71■□□□□ 0.11
SF3A1-206ENST00000471037 TSPOAP1O95153 1857 aa15.71■□□□□ 0.11
SF3A1-206ENST00000471037 ASXL2Q76L83 1435 aa15.7■□□□□ 0.1
SF3A1-206ENST00000471037 UACAQ9BZF9 1416 aa15.69■□□□□ 0.1
SF3A1-206ENST00000471037 UGGT2Q9NYU1 1516 aa15.69■□□□□ 0.1
SF3A1-206ENST00000471037 RAPGEF2Q9Y4G8 1499 aa15.69■□□□□ 0.1
SF3A1-206ENST00000471037 TTBK1Q5TCY1 1321 aaPredicted RBP15.68■□□□□ 0.1
SF3A1-206ENST00000471037 KDM5BQ9UGL1 1544 aa15.67■□□□□ 0.1
SF3A1-206ENST00000471037 PPRC1Q5VV67 1664 aaKnown RBP15.67■□□□□ 0.1
SF3A1-206ENST00000471037 KDM4FA0A1W2PPD8 638 aa15.65■□□□□ 0.1
SF3A1-206ENST00000471037 KIAA0556O60303 1618 aa15.65■□□□□ 0.1
SF3A1-206ENST00000471037 EPRSP07814 1512 aaKnown RBP15.63■□□□□ 0.09
SF3A1-206ENST00000471037 MAP3K4Q9Y6R4 1608 aa15.61■□□□□ 0.09
SF3A1-206ENST00000471037 ZCCHC11Q5TAX3 1644 aaKnown RBP15.61■□□□□ 0.09
SF3A1-206ENST00000471037 TEX14Q8IWB6 1497 aa15.58■□□□□ 0.08
SF3A1-206ENST00000471037 CTTNBP2Q8WZ74 1663 aa15.57■□□□□ 0.08
SF3A1-206ENST00000471037 COL17A1Q9UMD9 1497 aaPredicted RBP15.56■□□□□ 0.08
SF3A1-206ENST00000471037 WDR7Q9Y4E6 1490 aa15.55■□□□□ 0.08
SF3A1-206ENST00000471037 GOLGA3Q08378 1498 aa15.54■□□□□ 0.08
SF3A1-206ENST00000471037 ADGRL1O94910 1474 aa15.52■□□□□ 0.07
SF3A1-206ENST00000471037 PRXQ9BXM0 1461 aa15.52■□□□□ 0.07
SF3A1-206ENST00000471037 ABCA8O94911 1581 aa15.51■□□□□ 0.07
SF3A1-206ENST00000471037 MAGI3Q5TCQ9 1506 aa15.48■□□□□ 0.07
SF3A1-206ENST00000471037 CFAP43Q8NDM7 1665 aa15.48■□□□□ 0.07
SF3A1-206ENST00000471037 CD109Q6YHK3 1445 aa15.44■□□□□ 0.06
SF3A1-206ENST00000471037 KCNH8Q96L42 1107 aa15.38■□□□□ 0.05
SF3A1-206ENST00000471037 SAMD9Q5K651 1589 aa15.36■□□□□ 0.05
SF3A1-206ENST00000471037 ATP10BO94823 1461 aa15.36■□□□□ 0.05
SF3A1-206ENST00000471037 ARAP3Q8WWN8 1544 aa15.36■□□□□ 0.05
SF3A1-206ENST00000471037 HECW2Q9P2P5 1572 aa15.35■□□□□ 0.05
SF3A1-206ENST00000471037 FAM9AQ8IZU1 332 aaPredicted RBP15.34■□□□□ 0.05
SF3A1-206ENST00000471037 ABCA9Q8IUA7 1624 aa15.34■□□□□ 0.05
SF3A1-206ENST00000471037 PHLDB1Q86UU1 1377 aa15.32■□□□□ 0.04
SF3A1-206ENST00000471037 CSRNP3Q8WYN3 585 aa15.31■□□□□ 0.04
SF3A1-206ENST00000471037 RAPGEF6Q8TEU7 1601 aa15.31■□□□□ 0.04
SF3A1-206ENST00000471037 KIF21BO75037 1637 aa15.3■□□□□ 0.04
SF3A1-206ENST00000471037 P3H3Q8IVL6 736 aa15.3■□□□□ 0.04
SF3A1-206ENST00000471037 EEA1Q15075 1411 aa15.28■□□□□ 0.04
SF3A1-206ENST00000471037 ARID3CA6NKF2 412 aa15.28■□□□□ 0.04
SF3A1-206ENST00000471037 ILDR1Q86SU0 546 aaPredicted RBP15.28■□□□□ 0.04
SF3A1-206ENST00000471037 NEO1Q92859 1461 aa15.27■□□□□ 0.04
SF3A1-206ENST00000471037 NUP153P49790 1475 aaKnown RBP15.27■□□□□ 0.03
SF3A1-206ENST00000471037 FRMPD1Q5SYB0 1578 aa15.22■□□□□ 0.03
SF3A1-206ENST00000471037 ADAMTSL3P82987 1691 aa15.22■□□□□ 0.03
SF3A1-206ENST00000471037 FHOD3Q2V2M9 1422 aa15.21■□□□□ 0.03
SF3A1-206ENST00000471037 RAPGEF3O95398 923 aa15.2■□□□□ 0.02
SF3A1-206ENST00000471037 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.19■□□□□ 0.02
SF3A1-206ENST00000471037 HNRNPUL2Q1KMD3 747 aaKnown RBP15.19■□□□□ 0.02
SF3A1-206ENST00000471037 EFCAB5A4FU69 1503 aa15.18■□□□□ 0.02
SF3A1-206ENST00000471037 PTPRMP28827 1452 aa15.18■□□□□ 0.02
SF3A1-206ENST00000471037 BCORL1Q5H9F3 1711 aa15.16■□□□□ 0.02
SF3A1-206ENST00000471037 ARHGEF40Q8TER5 1519 aa15.16■□□□□ 0.02
SF3A1-206ENST00000471037 CFAP74Q9C0B2 1584 aa15.15■□□□□ 0.02
SF3A1-206ENST00000471037 DENND4BO75064 1496 aaPredicted RBP15.14■□□□□ 0.01
SF3A1-206ENST00000471037 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.14■□□□□ 0.01
SF3A1-206ENST00000471037 PLEKHD1A6NEE1 506 aa15.14■□□□□ 0.01
SF3A1-206ENST00000471037 RICTORQ6R327 1708 aa15.14■□□□□ 0.01
SF3A1-206ENST00000471037 AKNAQ7Z591 1439 aa15.13■□□□□ 0.01
SF3A1-206ENST00000471037 MADDQ8WXG6 1647 aa15.13■□□□□ 0.01
SF3A1-206ENST00000471037 FANCAO15360 1455 aa15.13■□□□□ 0.01
SF3A1-206ENST00000471037 TTC37Q6PGP7 1564 aa15.12■□□□□ 0.01
SF3A1-206ENST00000471037 RANGAP1P46060 587 aaPredicted RBP15.12■□□□□ 0.01
SF3A1-206ENST00000471037 ZMYM4Q5VZL5 1548 aa15.12■□□□□ 0.01
SF3A1-206ENST00000471037 ARID4BQ4LE39 1312 aaPredicted RBP15.09■□□□□ 0.01
SF3A1-206ENST00000471037 PCF11O94913 1555 aaKnown RBP15.08■□□□□ 0
SF3A1-206ENST00000471037 CDK13Q14004 1512 aaKnown RBP15.07■□□□□ 0
SF3A1-206ENST00000471037 MAGI2Q86UL8 1455 aa15.07■□□□□ 0
SF3A1-206ENST00000471037 LMTK3Q96Q04 1460 aa15.07■□□□□ 0
SF3A1-206ENST00000471037 ZFYVE16Q7Z3T8 1539 aa15.06■□□□□ 0
SF3A1-206ENST00000471037 RIMS1Q86UR5 1692 aaKnown RBP15.05■□□□□ -0
SF3A1-206ENST00000471037 PLCH2O75038 1416 aa15.04■□□□□ -0
SF3A1-206ENST00000471037 FMN1Q68DA7 1419 aa15.04■□□□□ -0
SF3A1-206ENST00000471037 POGZQ7Z3K3 1410 aa15.04■□□□□ -0
SF3A1-206ENST00000471037 YEATS2Q9ULM3 1422 aa15.04■□□□□ -0
SF3A1-206ENST00000471037 HECW1Q76N89 1606 aa15.03■□□□□ -0
SF3A1-206ENST00000471037 SIGLEC1Q9BZZ2 1709 aa15.03■□□□□ -0
SF3A1-206ENST00000471037 FBXO41Q8TF61 875 aa15.02■□□□□ -0
SF3A1-206ENST00000471037 ARHGAP35Q9NRY4 1499 aa15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 68 ms