RNA–Protein interactions for RNA: ENST00000470606.5

GTF3A-206, Transcript of general transcription factor IIIA, humanhuman

TSL 2

Gene GTF3A, Length 1,919 nt, Biotype processed transcript, Subcellular localisation Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3A-206ENST00000470606 GRIN2AQ12879 1464 aa13.21□□□□□ -0.3
GTF3A-206ENST00000470606 SYNJ2O15056 1496 aa13.2□□□□□ -0.3
GTF3A-206ENST00000470606 VPS8Q8N3P4 1428 aa13.19□□□□□ -0.3
GTF3A-206ENST00000470606 PPARGC1BQ86YN6 1023 aaKnown RBP13.17□□□□□ -0.3
GTF3A-206ENST00000470606 CEP170Q5SW79 1584 aa13.16□□□□□ -0.3
GTF3A-206ENST00000470606 CHMP7Q8WUX9 453 aaPredicted RBP13.15□□□□□ -0.3
GTF3A-206ENST00000470606 FBLN2P98095 1184 aa13.15□□□□□ -0.3
GTF3A-206ENST00000470606 P3H3Q8IVL6 736 aa13.15□□□□□ -0.3
GTF3A-206ENST00000470606 IQGAP2Q13576 1575 aa13.14□□□□□ -0.31
GTF3A-206ENST00000470606 SAMD9Q5K651 1589 aa13.14□□□□□ -0.31
GTF3A-206ENST00000470606 FHOD3Q2V2M9 1422 aa13.13□□□□□ -0.31
GTF3A-206ENST00000470606 CHD1O14646 1710 aa13.12□□□□□ -0.31
GTF3A-206ENST00000470606 NUP160Q12769 1436 aa13.12□□□□□ -0.31
GTF3A-206ENST00000470606 KIAA0586Q9BVV6 1533 aa13.12□□□□□ -0.31
GTF3A-206ENST00000470606 EFCAB5A4FU69 1503 aa13.11□□□□□ -0.31
GTF3A-206ENST00000470606 UGGT2Q9NYU1 1516 aa13.09□□□□□ -0.31
GTF3A-206ENST00000470606 DISP1Q96F81 1524 aa13.06□□□□□ -0.32
GTF3A-206ENST00000470606 TTBK1Q5TCY1 1321 aaPredicted RBP13.05□□□□□ -0.32
GTF3A-206ENST00000470606 PCF11O94913 1555 aaKnown RBP13.05□□□□□ -0.32
GTF3A-206ENST00000470606 PCGF6Q9BYE7 350 aa13.04□□□□□ -0.32
GTF3A-206ENST00000470606 KIAA0556O60303 1618 aa13.02□□□□□ -0.32
GTF3A-206ENST00000470606 KANK4Q5T7N3 995 aaPredicted RBP13.01□□□□□ -0.33
GTF3A-206ENST00000470606 JPH4Q96JJ6 628 aa13.01□□□□□ -0.33
GTF3A-206ENST00000470606 TRIM26Q12899 539 aaPredicted RBP13.01□□□□□ -0.33
GTF3A-206ENST00000470606 LRRIQ1Q96JM4 1722 aa13.01□□□□□ -0.33
GTF3A-206ENST00000470606 FMN1Q68DA7 1419 aa12.99□□□□□ -0.33
GTF3A-206ENST00000470606 CASKIN1Q8WXD9 1431 aa12.99□□□□□ -0.33
GTF3A-206ENST00000470606 FYCO1Q9BQS8 1478 aa12.97□□□□□ -0.33
GTF3A-206ENST00000470606 SHROOM2Q13796 1616 aa12.97□□□□□ -0.33
GTF3A-206ENST00000470606 TIAM1Q13009 1591 aa12.96□□□□□ -0.33
GTF3A-206ENST00000470606 CLASP1Q7Z460 1538 aa12.96□□□□□ -0.33
GTF3A-206ENST00000470606 ERCC6L2Q5T890 1561 aa12.94□□□□□ -0.34
GTF3A-206ENST00000470606 APLP2Q06481 763 aa12.94□□□□□ -0.34
GTF3A-206ENST00000470606 CFAP43Q8NDM7 1665 aa12.94□□□□□ -0.34
GTF3A-206ENST00000470606 MAP3K1Q13233 1512 aa12.94□□□□□ -0.34
GTF3A-206ENST00000470606 PRG4Q92954 1404 aaPredicted RBP12.93□□□□□ -0.34
GTF3A-206ENST00000470606 ATP1B4Q9UN42 357 aaPredicted RBP12.93□□□□□ -0.34
GTF3A-206ENST00000470606 LRRC9Q6ZRR7 1453 aa12.91□□□□□ -0.34
GTF3A-206ENST00000470606 DNAJC5Q9H3Z4 198 aa12.9□□□□□ -0.34
GTF3A-206ENST00000470606 CARMIL2Q6F5E8 1435 aa12.9□□□□□ -0.34
GTF3A-206ENST00000470606 PLB1Q6P1J6 1458 aa12.9□□□□□ -0.34
GTF3A-206ENST00000470606 NUP153P49790 1475 aaKnown RBP12.88□□□□□ -0.35
GTF3A-206ENST00000470606 MAGI3Q5TCQ9 1506 aa12.88□□□□□ -0.35
GTF3A-206ENST00000470606 EPRSP07814 1512 aaKnown RBP12.87□□□□□ -0.35
GTF3A-206ENST00000470606 CDK13Q14004 1512 aaKnown RBP12.87□□□□□ -0.35
GTF3A-206ENST00000470606 HECW1Q76N89 1606 aa12.87□□□□□ -0.35
GTF3A-206ENST00000470606 RAPGEF6Q8TEU7 1601 aa12.87□□□□□ -0.35
GTF3A-206ENST00000470606 ARID3CA6NKF2 412 aa12.87□□□□□ -0.35
GTF3A-206ENST00000470606 ABCA8O94911 1581 aa12.85□□□□□ -0.35
GTF3A-206ENST00000470606 PTPRGP23470 1445 aa12.82□□□□□ -0.36
GTF3A-206ENST00000470606 PHLDB1Q86UU1 1377 aa12.82□□□□□ -0.36
GTF3A-206ENST00000470606 OSCARQ8IYS5 282 aa12.82□□□□□ -0.36
GTF3A-206ENST00000470606 CCDC18Q5T9S5 1454 aa12.82□□□□□ -0.36
GTF3A-206ENST00000470606 RRBP1Q9P2E9 1410 aaKnown RBP12.79□□□□□ -0.36
GTF3A-206ENST00000470606 MTUS2Q5JR59 1369 aa12.79□□□□□ -0.36
GTF3A-206ENST00000470606 ATP10BO94823 1461 aa12.77□□□□□ -0.36
GTF3A-206ENST00000470606 EHBP1L1Q8N3D4 1523 aa12.77□□□□□ -0.37
GTF3A-206ENST00000470606 ARHGEF11O15085 1522 aa12.76□□□□□ -0.37
GTF3A-206ENST00000470606 NCOA2Q15596 1464 aa12.76□□□□□ -0.37
GTF3A-206ENST00000470606 UACAQ9BZF9 1416 aa12.75□□□□□ -0.37
GTF3A-206ENST00000470606 SUPT6HQ7KZ85 1726 aaKnown RBP12.74□□□□□ -0.37
GTF3A-206ENST00000470606 CCNB3Q8WWL7 1395 aa12.74□□□□□ -0.37
GTF3A-206ENST00000470606 ABCC2Q92887 1545 aa12.73□□□□□ -0.37
GTF3A-206ENST00000470606 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.72□□□□□ -0.37
GTF3A-206ENST00000470606 HNRNPUL2Q1KMD3 747 aaKnown RBP12.72□□□□□ -0.37
GTF3A-206ENST00000470606 KIF14Q15058 1648 aa12.71□□□□□ -0.38
GTF3A-206ENST00000470606 TROQ12816 1431 aaPredicted RBP12.7□□□□□ -0.38
GTF3A-206ENST00000470606 ADCY10Q96PN6 1610 aa12.7□□□□□ -0.38
GTF3A-206ENST00000470606 MYOM3Q5VTT5 1437 aa12.69□□□□□ -0.38
GTF3A-206ENST00000470606 FGD6Q6ZV73 1430 aa12.69□□□□□ -0.38
GTF3A-206ENST00000470606 UHRF1BP1LA0JNW5 1464 aa12.69□□□□□ -0.38
GTF3A-206ENST00000470606 ZCCHC11Q5TAX3 1644 aaKnown RBP12.66□□□□□ -0.38
GTF3A-206ENST00000470606 KDM5BQ9UGL1 1544 aa12.66□□□□□ -0.38
GTF3A-206ENST00000470606 CDK11AQ9UQ88 783 aaPredicted RBP12.66□□□□□ -0.38
GTF3A-206ENST00000470606 PLEKHD1A6NEE1 506 aa12.64□□□□□ -0.39
GTF3A-206ENST00000470606 FAM50AQ14320 339 aaKnown RBP12.64□□□□□ -0.39
GTF3A-206ENST00000470606 ABCC10Q5T3U5 1492 aa12.64□□□□□ -0.39
GTF3A-206ENST00000470606 PTPN23Q9H3S7 1636 aa12.64□□□□□ -0.39
GTF3A-206ENST00000470606 ITGAEP38570 1179 aa12.64□□□□□ -0.39
GTF3A-206ENST00000470606 PTPRKQ15262 1439 aa12.62□□□□□ -0.39
GTF3A-206ENST00000470606 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.62□□□□□ -0.39
GTF3A-206ENST00000470606 GPATCH8Q9UKJ3 1502 aaKnown RBP12.62□□□□□ -0.39
GTF3A-206ENST00000470606 CDC42BPAQ5VT25 1732 aa12.62□□□□□ -0.39
GTF3A-206ENST00000470606 ZNF644Q9H582 1327 aaPredicted RBP12.61□□□□□ -0.39
GTF3A-206ENST00000470606 TCOF1Q13428 1488 aaKnown RBP12.61□□□□□ -0.39
GTF3A-206ENST00000470606 MIA2Q96PC5 1412 aa12.6□□□□□ -0.39
GTF3A-206ENST00000470606 RIMBP3CA6NJZ7 1639 aa12.6□□□□□ -0.39
GTF3A-206ENST00000470606 RIMBP3BA6NNM3 1639 aa12.6□□□□□ -0.39
GTF3A-206ENST00000470606 RIMBP3Q9UFD9 1639 aa12.6□□□□□ -0.39
GTF3A-206ENST00000470606 HRCP23327 699 aa12.59□□□□□ -0.39
GTF3A-206ENST00000470606 TTC37Q6PGP7 1564 aa12.58□□□□□ -0.39
GTF3A-206ENST00000470606 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.58□□□□□ -0.4
GTF3A-206ENST00000470606 CDC42BPBQ9Y5S2 1711 aa12.57□□□□□ -0.4
GTF3A-206ENST00000470606 ITSN2Q9NZM3 1697 aa12.56□□□□□ -0.4
GTF3A-206ENST00000470606 KCNH8Q96L42 1107 aa12.56□□□□□ -0.4
GTF3A-206ENST00000470606 CFDP1Q9UEE9 299 aaPredicted RBP12.54□□□□□ -0.4
GTF3A-206ENST00000470606 CAMSAP2Q08AD1 1489 aa12.54□□□□□ -0.4
GTF3A-206ENST00000470606 CYB5RLQ6IPT4 315 aa12.53□□□□□ -0.4
GTF3A-206ENST00000470606 PREX2Q70Z35 1606 aa12.53□□□□□ -0.4
GTF3A-206ENST00000470606 ASXL2Q76L83 1435 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 174.7 ms