RNA–Protein interactions for RNA: ENST00000470463.1

SND1-208, Transcript of staphylococcal nuclease and tudor domain containing 1, humanhuman

TSL 4

Gene SND1, Length 530 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SND1-208ENST00000470463 EFCAB5A4FU69 1503 aa17.07■□□□□ 0.32
SND1-208ENST00000470463 EIF4G3O43432 1585 aaKnown RBP17.06■□□□□ 0.32
SND1-208ENST00000470463 MAGI1Q96QZ7 1491 aaPredicted RBP17.06■□□□□ 0.32
SND1-208ENST00000470463 ARHGEF11O15085 1522 aa17.06■□□□□ 0.32
SND1-208ENST00000470463 ZNF608Q9ULD9 1512 aaPredicted RBP17.06■□□□□ 0.32
SND1-208ENST00000470463 RIMBP3CA6NJZ7 1639 aa17.05■□□□□ 0.32
SND1-208ENST00000470463 RIMBP3BA6NNM3 1639 aa17.05■□□□□ 0.32
SND1-208ENST00000470463 RIMBP3Q9UFD9 1639 aa17.05■□□□□ 0.32
SND1-208ENST00000470463 ARHGAP35Q9NRY4 1499 aa17.05■□□□□ 0.32
SND1-208ENST00000470463 ARAP1Q96P48 1450 aa17.04■□□□□ 0.32
SND1-208ENST00000470463 FBLN2P98095 1184 aa17.03■□□□□ 0.32
SND1-208ENST00000470463 PCGF6Q9BYE7 350 aa17.03■□□□□ 0.32
SND1-208ENST00000470463 RANGAP1P46060 587 aaPredicted RBP17■□□□□ 0.31
SND1-208ENST00000470463 SNAPC4Q5SXM2 1469 aa16.99■□□□□ 0.31
SND1-208ENST00000470463 SYNJ2O15056 1496 aa16.97■□□□□ 0.31
SND1-208ENST00000470463 GRIN2AQ12879 1464 aa16.94■□□□□ 0.3
SND1-208ENST00000470463 AEBP2Q6ZN18 517 aaPredicted RBP16.94■□□□□ 0.3
SND1-208ENST00000470463 MAP3K1Q13233 1512 aa16.94■□□□□ 0.3
SND1-208ENST00000470463 FMN1Q68DA7 1419 aa16.93■□□□□ 0.3
SND1-208ENST00000470463 IQGAP2Q13576 1575 aa16.93■□□□□ 0.3
SND1-208ENST00000470463 KIAA0586Q9BVV6 1533 aa16.92■□□□□ 0.3
SND1-208ENST00000470463 SAMD9Q5K651 1589 aa16.91■□□□□ 0.3
SND1-208ENST00000470463 CHMP7Q8WUX9 453 aaPredicted RBP16.91■□□□□ 0.3
SND1-208ENST00000470463 UGGT2Q9NYU1 1516 aa16.87■□□□□ 0.29
SND1-208ENST00000470463 FYCO1Q9BQS8 1478 aa16.86■□□□□ 0.29
SND1-208ENST00000470463 CASKIN1Q8WXD9 1431 aa16.85■□□□□ 0.29
SND1-208ENST00000470463 FHOD3Q2V2M9 1422 aa16.84■□□□□ 0.29
SND1-208ENST00000470463 NUP160Q12769 1436 aa16.83■□□□□ 0.28
SND1-208ENST00000470463 PPARGC1BQ86YN6 1023 aaKnown RBP16.82■□□□□ 0.28
SND1-208ENST00000470463 TIAM1Q13009 1591 aa16.79■□□□□ 0.28
SND1-208ENST00000470463 P3H3Q8IVL6 736 aa16.78■□□□□ 0.28
SND1-208ENST00000470463 PCF11O94913 1555 aaKnown RBP16.77■□□□□ 0.28
SND1-208ENST00000470463 CEP170Q5SW79 1584 aa16.77■□□□□ 0.27
SND1-208ENST00000470463 CARMIL2Q6F5E8 1435 aa16.76■□□□□ 0.27
SND1-208ENST00000470463 CFAP43Q8NDM7 1665 aa16.75■□□□□ 0.27
SND1-208ENST00000470463 KIAA0556O60303 1618 aa16.74■□□□□ 0.27
SND1-208ENST00000470463 CCDC18Q5T9S5 1454 aa16.73■□□□□ 0.27
SND1-208ENST00000470463 LRRC9Q6ZRR7 1453 aa16.72■□□□□ 0.27
SND1-208ENST00000470463 DISP1Q96F81 1524 aa16.7■□□□□ 0.26
SND1-208ENST00000470463 HECW1Q76N89 1606 aa16.7■□□□□ 0.26
SND1-208ENST00000470463 JPH4Q96JJ6 628 aa16.7■□□□□ 0.26
SND1-208ENST00000470463 TTBK1Q5TCY1 1321 aaPredicted RBP16.7■□□□□ 0.26
SND1-208ENST00000470463 KANK4Q5T7N3 995 aaPredicted RBP16.69■□□□□ 0.26
SND1-208ENST00000470463 ATP1B4Q9UN42 357 aaPredicted RBP16.68■□□□□ 0.26
SND1-208ENST00000470463 CHD1O14646 1710 aa16.67■□□□□ 0.26
SND1-208ENST00000470463 RRBP1Q9P2E9 1410 aaKnown RBP16.66■□□□□ 0.26
SND1-208ENST00000470463 HRCP23327 699 aa16.65■□□□□ 0.26
SND1-208ENST00000470463 ZEB1P37275 1124 aaPredicted RBP16.64■□□□□ 0.25
SND1-208ENST00000470463 MTUS2Q5JR59 1369 aa16.63■□□□□ 0.25
SND1-208ENST00000470463 CLASP1Q7Z460 1538 aa16.6■□□□□ 0.25
SND1-208ENST00000470463 EHBP1L1Q8N3D4 1523 aa16.6■□□□□ 0.25
SND1-208ENST00000470463 CCNB3Q8WWL7 1395 aa16.6■□□□□ 0.25
SND1-208ENST00000470463 EPRSP07814 1512 aaKnown RBP16.6■□□□□ 0.25
SND1-208ENST00000470463 CDK11AQ9UQ88 783 aaPredicted RBP16.59■□□□□ 0.25
SND1-208ENST00000470463 RAPGEF6Q8TEU7 1601 aa16.59■□□□□ 0.25
SND1-208ENST00000470463 SHROOM2Q13796 1616 aa16.58■□□□□ 0.24
SND1-208ENST00000470463 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.57■□□□□ 0.244e-6■■■■■ 30.2
SND1-208ENST00000470463 PRG4Q92954 1404 aaPredicted RBP16.56■□□□□ 0.24
SND1-208ENST00000470463 SUPT6HQ7KZ85 1726 aaKnown RBP16.55■□□□□ 0.24
SND1-208ENST00000470463 LRRIQ1Q96JM4 1722 aa16.53■□□□□ 0.24
SND1-208ENST00000470463 NUP153P49790 1475 aaKnown RBP16.52■□□□□ 0.23
SND1-208ENST00000470463 PTPRGP23470 1445 aa16.51■□□□□ 0.23
SND1-208ENST00000470463 PHLDB1Q86UU1 1377 aa16.51■□□□□ 0.23
SND1-208ENST00000470463 ABCA8O94911 1581 aa16.49■□□□□ 0.23
SND1-208ENST00000470463 NCOA2Q15596 1464 aa16.48■□□□□ 0.23
SND1-208ENST00000470463 MYOM3Q5VTT5 1437 aa16.47■□□□□ 0.23
SND1-208ENST00000470463 HNRNPUL2Q1KMD3 747 aaKnown RBP16.47■□□□□ 0.23
SND1-208ENST00000470463 FGD6Q6ZV73 1430 aa16.46■□□□□ 0.23
SND1-208ENST00000470463 CDK13Q14004 1512 aaKnown RBP16.46■□□□□ 0.23
SND1-208ENST00000470463 PLB1Q6P1J6 1458 aa16.46■□□□□ 0.23
SND1-208ENST00000470463 MIA2Q96PC5 1412 aa16.45■□□□□ 0.22
SND1-208ENST00000470463 CCER1Q8TC90 406 aaPredicted RBP16.44■□□□□ 0.22
SND1-208ENST00000470463 NPM1P06748 294 aaKnown RBP eCLIP16.43■□□□□ 0.22
SND1-208ENST00000470463 TROQ12816 1431 aaPredicted RBP16.43■□□□□ 0.22
SND1-208ENST00000470463 UACAQ9BZF9 1416 aa16.43■□□□□ 0.22
SND1-208ENST00000470463 MAGI3Q5TCQ9 1506 aa16.42■□□□□ 0.22
SND1-208ENST00000470463 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.42■□□□□ 0.22
SND1-208ENST00000470463 PLEKHD1A6NEE1 506 aa16.4■□□□□ 0.22
SND1-208ENST00000470463 FAM50AQ14320 339 aaKnown RBP16.39■□□□□ 0.21
SND1-208ENST00000470463 ADCY10Q96PN6 1610 aa16.37■□□□□ 0.21
SND1-208ENST00000470463 UHRF1BP1LA0JNW5 1464 aa16.37■□□□□ 0.21
SND1-208ENST00000470463 TCOF1Q13428 1488 aaKnown RBP16.37■□□□□ 0.21
SND1-208ENST00000470463 CLSPNQ9HAW4 1339 aa16.37■□□□□ 0.21
SND1-208ENST00000470463 ATP10BO94823 1461 aa16.36■□□□□ 0.21
SND1-208ENST00000470463 ABCC2Q92887 1545 aa16.36■□□□□ 0.21
SND1-208ENST00000470463 FAM69CQ0P6D2 419 aa16.35■□□□□ 0.21
SND1-208ENST00000470463 PTPN23Q9H3S7 1636 aa16.34■□□□□ 0.21
SND1-208ENST00000470463 ACIN1Q9UKV3 1341 aaKnown RBP16.34■□□□□ 0.21
SND1-208ENST00000470463 ITSN2Q9NZM3 1697 aa16.33■□□□□ 0.2
SND1-208ENST00000470463 KIF14Q15058 1648 aa16.32■□□□□ 0.2
SND1-208ENST00000470463 SETD5Q9C0A6 1442 aa16.31■□□□□ 0.2
SND1-208ENST00000470463 ARID3CA6NKF2 412 aa16.31■□□□□ 0.2
SND1-208ENST00000470463 ERCC6L2Q5T890 1561 aa16.3■□□□□ 0.2
SND1-208ENST00000470463 ITGAEP38570 1179 aa16.29■□□□□ 0.2
SND1-208ENST00000470463 AKNAQ7Z591 1439 aa16.27■□□□□ 0.19
SND1-208ENST00000470463 KDM5BQ9UGL1 1544 aa16.26■□□□□ 0.19
SND1-208ENST00000470463 CFDP1Q9UEE9 299 aaPredicted RBP16.25■□□□□ 0.19
SND1-208ENST00000470463 HFM1A2PYH4 1435 aa16.25■□□□□ 0.19
SND1-208ENST00000470463 GPATCH8Q9UKJ3 1502 aaKnown RBP16.24■□□□□ 0.19
SND1-208ENST00000470463 RAB3GAP2Q9H2M9 1393 aa16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms