RNA–Protein interactions for RNA: ENST00000470045.1

COMMD3-208, Transcript of COMM domain containing 3, humanhuman

TSL 2

Gene COMMD3, Length 662 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD3-208ENST00000470045 SHROOM2Q13796 1616 aa24.39■■□□□ 1.5
COMMD3-208ENST00000470045 CUL7Q14999 1698 aa24.38■■□□□ 1.49
COMMD3-208ENST00000470045 IGF1RP08069 1367 aa24.33■■□□□ 1.49
COMMD3-208ENST00000470045 RUSC2Q8N2Y8 1516 aa24.31■■□□□ 1.48
COMMD3-208ENST00000470045 ERCC6L2Q5T890 1561 aa24.31■■□□□ 1.48
COMMD3-208ENST00000470045 CARMIL1Q5VZK9 1371 aa24.17■■□□□ 1.46
COMMD3-208ENST00000470045 KIAA0586Q9BVV6 1533 aa24.17■■□□□ 1.46
COMMD3-208ENST00000470045 PRG4Q92954 1404 aaPredicted RBP24.16■■□□□ 1.46
COMMD3-208ENST00000470045 JPH4Q96JJ6 628 aa24.13■■□□□ 1.45
COMMD3-208ENST00000470045 RAPGEF2Q9Y4G8 1499 aa24.04■■□□□ 1.44
COMMD3-208ENST00000470045 IQGAP2Q13576 1575 aa24.02■■□□□ 1.44
COMMD3-208ENST00000470045 TRHP20396 242 aaPredicted RBP23.96■■□□□ 1.43
COMMD3-208ENST00000470045 PRXQ9BXM0 1461 aa23.92■■□□□ 1.42
COMMD3-208ENST00000470045 CTTNBP2Q8WZ74 1663 aa23.92■■□□□ 1.42
COMMD3-208ENST00000470045 ADCY10Q96PN6 1610 aa23.91■■□□□ 1.42
COMMD3-208ENST00000470045 UGGT2Q9NYU1 1516 aa23.89■■□□□ 1.41
COMMD3-208ENST00000470045 CARMIL2Q6F5E8 1435 aa23.87■■□□□ 1.41
COMMD3-208ENST00000470045 DISP1Q96F81 1524 aa23.87■■□□□ 1.41
COMMD3-208ENST00000470045 TNIKQ9UKE5 1360 aa23.82■■□□□ 1.4
COMMD3-208ENST00000470045 MAPKBP1O60336 1514 aa23.82■■□□□ 1.4
COMMD3-208ENST00000470045 KIAA0556O60303 1618 aa23.81■■□□□ 1.4
COMMD3-208ENST00000470045 KIF13AQ9H1H9 1805 aa23.81■■□□□ 1.4
COMMD3-208ENST00000470045 PTPRGP23470 1445 aa23.81■■□□□ 1.4
COMMD3-208ENST00000470045 EEA1Q15075 1411 aa23.79■■□□□ 1.4
COMMD3-208ENST00000470045 UHRF1BP1LA0JNW5 1464 aa23.73■■□□□ 1.39
COMMD3-208ENST00000470045 CSRNP3Q8WYN3 585 aa23.72■■□□□ 1.39
COMMD3-208ENST00000470045 ABCC2Q92887 1545 aa23.7■■□□□ 1.38
COMMD3-208ENST00000470045 ABCC10Q5T3U5 1492 aa23.7■■□□□ 1.38
COMMD3-208ENST00000470045 DIP2BQ9P265 1576 aa23.69■■□□□ 1.38
COMMD3-208ENST00000470045 NPM1P06748 294 aaKnown RBP eCLIP23.69■■□□□ 1.38
COMMD3-208ENST00000470045 GOLGA3Q08378 1498 aa23.68■■□□□ 1.38
COMMD3-208ENST00000470045 UACAQ9BZF9 1416 aa23.67■■□□□ 1.38
COMMD3-208ENST00000470045 TTBK1Q5TCY1 1321 aaPredicted RBP23.62■■□□□ 1.37
COMMD3-208ENST00000470045 KIF21BO75037 1637 aa23.62■■□□□ 1.37
COMMD3-208ENST00000470045 KDM5BQ9UGL1 1544 aa23.61■■□□□ 1.37
COMMD3-208ENST00000470045 MSH5O43196 834 aa23.59■■□□□ 1.37
COMMD3-208ENST00000470045 SAMD9Q5K651 1589 aa23.58■■□□□ 1.37
COMMD3-208ENST00000470045 ZCCHC11Q5TAX3 1644 aaKnown RBP23.58■■□□□ 1.36
COMMD3-208ENST00000470045 ABCA8O94911 1581 aa23.57■■□□□ 1.36
COMMD3-208ENST00000470045 FAM69CQ0P6D2 419 aa23.55■■□□□ 1.36
COMMD3-208ENST00000470045 ASXL2Q76L83 1435 aa23.55■■□□□ 1.36
COMMD3-208ENST00000470045 PLB1Q6P1J6 1458 aa23.55■■□□□ 1.36
COMMD3-208ENST00000470045 GLI2P10070 1586 aa23.52■■□□□ 1.36
COMMD3-208ENST00000470045 FAM9AQ8IZU1 332 aaPredicted RBP23.5■■□□□ 1.35
COMMD3-208ENST00000470045 TSPOAP1O95153 1857 aa23.46■■□□□ 1.35
COMMD3-208ENST00000470045 PPRC1Q5VV67 1664 aaKnown RBP23.44■■□□□ 1.34
COMMD3-208ENST00000470045 EPRSP07814 1512 aaKnown RBP23.43■■□□□ 1.34
COMMD3-208ENST00000470045 MAP3K4Q9Y6R4 1608 aa23.41■■□□□ 1.34
COMMD3-208ENST00000470045 WDR7Q9Y4E6 1490 aa23.41■■□□□ 1.34
COMMD3-208ENST00000470045 EFCAB5A4FU69 1503 aa23.4■■□□□ 1.34
COMMD3-208ENST00000470045 RAPGEF6Q8TEU7 1601 aa23.38■■□□□ 1.33
COMMD3-208ENST00000470045 P3H3Q8IVL6 736 aa23.37■■□□□ 1.33
COMMD3-208ENST00000470045 KDM6BO15054 1643 aa23.36■■□□□ 1.33
COMMD3-208ENST00000470045 FHOD3Q2V2M9 1422 aa23.33■■□□□ 1.32
COMMD3-208ENST00000470045 ATP10BO94823 1461 aa23.31■■□□□ 1.32
COMMD3-208ENST00000470045 CFAP43Q8NDM7 1665 aa23.3■■□□□ 1.32
COMMD3-208ENST00000470045 NUP153P49790 1475 aaKnown RBP23.28■■□□□ 1.32
COMMD3-208ENST00000470045 TEX14Q8IWB6 1497 aa23.25■■□□□ 1.31
COMMD3-208ENST00000470045 RANGAP1P46060 587 aaPredicted RBP23.24■■□□□ 1.31
COMMD3-208ENST00000470045 UBTFP17480 764 aaKnown RBP23.22■■□□□ 1.31
COMMD3-208ENST00000470045 ARHGAP35Q9NRY4 1499 aa23.21■■□□□ 1.31
COMMD3-208ENST00000470045 MAGI3Q5TCQ9 1506 aa23.21■■□□□ 1.31
COMMD3-208ENST00000470045 ABCA9Q8IUA7 1624 aa23.19■■□□□ 1.3
COMMD3-208ENST00000470045 CD109Q6YHK3 1445 aa23.17■■□□□ 1.3
COMMD3-208ENST00000470045 ARID3CA6NKF2 412 aa23.17■■□□□ 1.3
COMMD3-208ENST00000470045 EHMT2Q96KQ7 1210 aa23.17■■□□□ 1.3
COMMD3-208ENST00000470045 COL17A1Q9UMD9 1497 aaPredicted RBP23.16■■□□□ 1.3
COMMD3-208ENST00000470045 KCNH8Q96L42 1107 aa23.14■■□□□ 1.29
COMMD3-208ENST00000470045 FMN1Q68DA7 1419 aa23.12■■□□□ 1.29
COMMD3-208ENST00000470045 HECW1Q76N89 1606 aa23.11■■□□□ 1.29
COMMD3-208ENST00000470045 CDK13Q14004 1512 aaKnown RBP23.07■■□□□ 1.28
COMMD3-208ENST00000470045 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.04■■□□□ 1.28
COMMD3-208ENST00000470045 HNRNPUL2Q1KMD3 747 aaKnown RBP23.04■■□□□ 1.28
COMMD3-208ENST00000470045 LRRIQ1Q96JM4 1722 aa23.02■■□□□ 1.28
COMMD3-208ENST00000470045 ARAP3Q8WWN8 1544 aa23.02■■□□□ 1.28
COMMD3-208ENST00000470045 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23■■□□□ 1.27
COMMD3-208ENST00000470045 PLEKHD1A6NEE1 506 aa23■■□□□ 1.27
COMMD3-208ENST00000470045 PIAS4Q8N2W9 510 aaPredicted RBP22.99■■□□□ 1.27
COMMD3-208ENST00000470045 NEO1Q92859 1461 aa22.98■■□□□ 1.27
COMMD3-208ENST00000470045 TTC37Q6PGP7 1564 aa22.98■■□□□ 1.27
COMMD3-208ENST00000470045 PHLDB1Q86UU1 1377 aa22.98■■□□□ 1.27
COMMD3-208ENST00000470045 PCF11O94913 1555 aaKnown RBP22.97■■□□□ 1.27
COMMD3-208ENST00000470045 CLIP1P30622 1438 aa22.93■■□□□ 1.26
COMMD3-208ENST00000470045 CASKIN1Q8WXD9 1431 aa22.93■■□□□ 1.26
COMMD3-208ENST00000470045 CFAP74Q9C0B2 1584 aa22.93■■□□□ 1.26
COMMD3-208ENST00000470045 FRMPD1Q5SYB0 1578 aa22.9■■□□□ 1.26
COMMD3-208ENST00000470045 FYCO1Q9BQS8 1478 aa22.89■■□□□ 1.25
COMMD3-208ENST00000470045 CCDC18Q5T9S5 1454 aa22.88■■□□□ 1.25
COMMD3-208ENST00000470045 KIF14Q15058 1648 aa22.88■■□□□ 1.25
COMMD3-208ENST00000470045 KDM4FA0A1W2PPD8 638 aa22.87■■□□□ 1.25
COMMD3-208ENST00000470045 TROQ12816 1431 aaPredicted RBP22.87■■□□□ 1.25
COMMD3-208ENST00000470045 FANCAO15360 1455 aa22.86■■□□□ 1.25
COMMD3-208ENST00000470045 MYO5CQ9NQX4 1742 aa22.86■■□□□ 1.25
COMMD3-208ENST00000470045 ATP1B4Q9UN42 357 aaPredicted RBP22.86■■□□□ 1.25
COMMD3-208ENST00000470045 RICTORQ6R327 1708 aa22.85■■□□□ 1.25
COMMD3-208ENST00000470045 CDK11AQ9UQ88 783 aaPredicted RBP22.84■■□□□ 1.25
COMMD3-208ENST00000470045 ADGRL1O94910 1474 aa22.84■■□□□ 1.25
COMMD3-208ENST00000470045 PLCH2O75038 1416 aa22.82■■□□□ 1.24
COMMD3-208ENST00000470045 AKNAQ7Z591 1439 aa22.82■■□□□ 1.24
COMMD3-208ENST00000470045 DENND4BO75064 1496 aaPredicted RBP22.79■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms