RNA–Protein interactions for RNA: ENST00000469717.5

TPM3-215, Transcript of tropomyosin 3, humanhuman

TSL 2

Gene TPM3, Length 4,041 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-215ENST00000469717 CCNB3Q8WWL7 1395 aa11.15□□□□□ -0.62
TPM3-215ENST00000469717 ANP32CO43423 234 aa11.15□□□□□ -0.62
TPM3-215ENST00000469717 CDK11AQ9UQ88 783 aaPredicted RBP11.15□□□□□ -0.62
TPM3-215ENST00000469717 RRBP1Q9P2E9 1410 aaKnown RBP11.14□□□□□ -0.63
TPM3-215ENST00000469717 HNRNPUQ00839 825 aaKnown RBP eCLIP11.14□□□□□ -0.63
TPM3-215ENST00000469717 BAZ1BQ9UIG0 1483 aaKnown RBP11.13□□□□□ -0.63
TPM3-215ENST00000469717 UNC13AQ9UPW8 1703 aa11.1□□□□□ -0.63
TPM3-215ENST00000469717 PAK3O75914 559 aaPredicted RBP11.1□□□□□ -0.63
TPM3-215ENST00000469717 B4GALNT3Q6L9W6 998 aa11.1□□□□□ -0.63
TPM3-215ENST00000469717 CUX2O14529 1486 aa11.08□□□□□ -0.64
TPM3-215ENST00000469717 ARID3CA6NKF2 412 aa11.08□□□□□ -0.64
TPM3-215ENST00000469717 CCER2I3L3R5 266 aa11.08□□□□□ -0.64
TPM3-215ENST00000469717 FAM50AQ14320 339 aaKnown RBP11.08□□□□□ -0.64
TPM3-215ENST00000469717 P3H3Q8IVL6 736 aa11.07□□□□□ -0.64
TPM3-215ENST00000469717 EIF5BO60841 1220 aaKnown RBP11.06□□□□□ -0.64
TPM3-215ENST00000469717 CCDC136Q96JN2 1154 aa11.06□□□□□ -0.64
TPM3-215ENST00000469717 SALL2Q9Y467 1007 aaPredicted RBP11.06□□□□□ -0.64
TPM3-215ENST00000469717 CCDC184Q52MB2 194 aa11.05□□□□□ -0.64
TPM3-215ENST00000469717 RTN4Q9NQC3 1192 aaKnown RBP11.04□□□□□ -0.64
TPM3-215ENST00000469717 SETD5Q9C0A6 1442 aa11.03□□□□□ -0.64
TPM3-215ENST00000469717 SENP3-EIF4A1A0A087X0R7 540 aa11.02□□□□□ -0.64
TPM3-215ENST00000469717 IL27Q8NEV9 243 aa11.01□□□□□ -0.65
TPM3-215ENST00000469717 NOP58Q9Y2X3 529 aaKnown RBP11□□□□□ -0.65
TPM3-215ENST00000469717 PHLDB1Q86UU1 1377 aa10.99□□□□□ -0.65
TPM3-215ENST00000469717 PRXQ9BXM0 1461 aa10.99□□□□□ -0.65
TPM3-215ENST00000469717 ARHGAP35Q9NRY4 1499 aa10.99□□□□□ -0.65
TPM3-215ENST00000469717 PPP4R2Q9NY27 417 aa10.99□□□□□ -0.65
TPM3-215ENST00000469717 FAM9BQ8IZU0 186 aa10.98□□□□□ -0.65
TPM3-215ENST00000469717 CNGB1Q14028 1251 aaPredicted RBP10.97□□□□□ -0.65
TPM3-215ENST00000469717 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.97□□□□□ -0.65
TPM3-215ENST00000469717 DNAJC5BQ9UF47 199 aa10.94□□□□□ -0.66
TPM3-215ENST00000469717 TONSLQ96HA7 1378 aa10.94□□□□□ -0.66
TPM3-215ENST00000469717 BICRAQ9NZM4 1560 aa10.93□□□□□ -0.66
TPM3-215ENST00000469717 ERICH3Q5RHP9 1530 aa10.93□□□□□ -0.66
TPM3-215ENST00000469717 TOP2BQ02880 1626 aa10.92□□□□□ -0.66
TPM3-215ENST00000469717 WASHC2AQ641Q2 1341 aa10.92□□□□□ -0.66
TPM3-215ENST00000469717 MYT1LQ9UL68 1186 aa10.92□□□□□ -0.66
TPM3-215ENST00000469717 TIAM1Q13009 1591 aa10.89□□□□□ -0.67
TPM3-215ENST00000469717 HSPA5P11021 654 aaKnown RBP10.88□□□□□ -0.67
TPM3-215ENST00000469717 PEG3Q9GZU2 1588 aa10.88□□□□□ -0.67
TPM3-215ENST00000469717 LRRC9Q6ZRR7 1453 aa10.88□□□□□ -0.67
TPM3-215ENST00000469717 AKNAQ7Z591 1439 aa10.88□□□□□ -0.67
TPM3-215ENST00000469717 C11orf95C9JLR9 678 aaPredicted RBP10.87□□□□□ -0.67
TPM3-215ENST00000469717 RTL5Q5HYW3 569 aaPredicted RBP10.87□□□□□ -0.67
TPM3-215ENST00000469717 NPM2Q86SE8 214 aaKnown RBP10.87□□□□□ -0.67
TPM3-215ENST00000469717 MRS2Q9HD23 443 aa10.87□□□□□ -0.67
TPM3-215ENST00000469717 TIMELESSQ9UNS1 1208 aa10.87□□□□□ -0.67
TPM3-215ENST00000469717 LAS1LQ9Y4W2 734 aaKnown RBP10.86□□□□□ -0.67
TPM3-215ENST00000469717 IPO9Q96P70 1041 aaKnown RBP10.85□□□□□ -0.67
TPM3-215ENST00000469717 ATAD2BQ9ULI0 1458 aa10.85□□□□□ -0.67
TPM3-215ENST00000469717 ZBTB47Q9UFB7 747 aaPredicted RBP10.84□□□□□ -0.67
TPM3-215ENST00000469717 ANP32AP39687 249 aaKnown RBP10.84□□□□□ -0.67
TPM3-215ENST00000469717 KIF27Q86VH2 1401 aa10.84□□□□□ -0.67
TPM3-215ENST00000469717 AQRO60306 1485 aaKnown RBP eCLIP10.83□□□□□ -0.684e-7■■□□□ 12.7
TPM3-215ENST00000469717 ERICH6BQ5W0A0 696 aa10.83□□□□□ -0.68
TPM3-215ENST00000469717 CUX1P39880 1505 aa10.83□□□□□ -0.68
TPM3-215ENST00000469717 PRKRIP1Q9H875 184 aaPredicted RBP10.82□□□□□ -0.68
TPM3-215ENST00000469717 BIVM-ERCC5R4GMW8 1640 aa10.82□□□□□ -0.68
TPM3-215ENST00000469717 PTPRKQ15262 1439 aa10.81□□□□□ -0.68
TPM3-215ENST00000469717 ZBED9Q6R2W3 1325 aa10.8□□□□□ -0.68
TPM3-215ENST00000469717 KDM5BQ9UGL1 1544 aa10.8□□□□□ -0.68
TPM3-215ENST00000469717 CCDC18Q5T9S5 1454 aa10.8□□□□□ -0.68
TPM3-215ENST00000469717 FOXD1Q16676 465 aa10.79□□□□□ -0.68
TPM3-215ENST00000469717 UBE2Q2Q8WVN8 375 aa10.79□□□□□ -0.68
TPM3-215ENST00000469717 ERCC6Q03468 1493 aa10.79□□□□□ -0.68
TPM3-215ENST00000469717 NEFMP07197 916 aa10.78□□□□□ -0.68
TPM3-215ENST00000469717 CHMP7Q8WUX9 453 aaPredicted RBP10.78□□□□□ -0.68
TPM3-215ENST00000469717 FHAD1B1AJZ9 1412 aa10.78□□□□□ -0.68
TPM3-215ENST00000469717 BRPF3Q9ULD4 1205 aa10.78□□□□□ -0.68
TPM3-215ENST00000469717 SKAP1Q86WV1 359 aa10.77□□□□□ -0.68
TPM3-215ENST00000469717 PCF11O94913 1555 aaKnown RBP10.77□□□□□ -0.69
TPM3-215ENST00000469717 CNTLNQ9NXG0 1405 aa10.77□□□□□ -0.69
TPM3-215ENST00000469717 CHIC2Q9UKJ5 165 aa10.77□□□□□ -0.69
TPM3-215ENST00000469717 EIF4G2P78344 907 aaKnown RBP eCLIP10.76□□□□□ -0.69
TPM3-215ENST00000469717 RRP7BPQ9NSQ0 103 aa10.76□□□□□ -0.69
TPM3-215ENST00000469717 FHOD3Q2V2M9 1422 aa10.76□□□□□ -0.69
TPM3-215ENST00000469717 POLR3GLQ9BT43 218 aa10.76□□□□□ -0.69
TPM3-215ENST00000469717 IGF1RP08069 1367 aa10.75□□□□□ -0.69
TPM3-215ENST00000469717 UACAQ9BZF9 1416 aa10.74□□□□□ -0.69
TPM3-215ENST00000469717 CCDC7Q96M83 1385 aa10.73□□□□□ -0.69
TPM3-215ENST00000469717 L3MBTL2Q969R5 705 aa10.73□□□□□ -0.69
TPM3-215ENST00000469717 MAP3K1Q13233 1512 aa10.72□□□□□ -0.69
TPM3-215ENST00000469717 NCOA2Q15596 1464 aa10.71□□□□□ -0.69
TPM3-215ENST00000469717 FGD6Q6ZV73 1430 aa10.71□□□□□ -0.69
TPM3-215ENST00000469717 CARMIL1Q5VZK9 1371 aa10.71□□□□□ -0.69
TPM3-215ENST00000469717 NUDCQ9Y266 331 aa10.71□□□□□ -0.7
TPM3-215ENST00000469717 NAIPQ13075 1403 aa10.71□□□□□ -0.7
TPM3-215ENST00000469717 NBPF8Q3BBV2 869 aa10.7□□□□□ -0.7
TPM3-215ENST00000469717 SLC4A3P48751 1232 aa10.7□□□□□ -0.7
TPM3-215ENST00000469717 KIF7Q2M1P5 1343 aa10.7□□□□□ -0.7
TPM3-215ENST00000469717 PLEKHG5O94827 1062 aa10.7□□□□□ -0.7
TPM3-215ENST00000469717 PTPN23Q9H3S7 1636 aa10.7□□□□□ -0.7
TPM3-215ENST00000469717 EXOC6Q8TAG9 804 aa10.69□□□□□ -0.7
TPM3-215ENST00000469717 CFAP43Q8NDM7 1665 aa10.69□□□□□ -0.7
TPM3-215ENST00000469717 ZNF777Q9ULD5 760 aaPredicted RBP10.69□□□□□ -0.7
TPM3-215ENST00000469717 HFM1A2PYH4 1435 aa10.69□□□□□ -0.7
TPM3-215ENST00000469717 TDRD9Q8NDG6 1382 aaKnown RBP10.69□□□□□ -0.7
TPM3-215ENST00000469717 SMG6Q86US8 1419 aaKnown RBP10.68□□□□□ -0.7
TPM3-215ENST00000469717 DENND4BO75064 1496 aaPredicted RBP10.68□□□□□ -0.7
TPM3-215ENST00000469717 NCOA1Q15788 1441 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms