RNA–Protein interactions for RNA: ENST00000469354.1

EPHA4-211, Transcript of EPH receptor A4, humanhuman

TSL 2

Gene EPHA4, Length 2,893 nt, Biotype processed transcript, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EPHA4-211ENST00000469354 WDR97A6NE52 1622 aa13.11□□□□□ -0.31
EPHA4-211ENST00000469354 ERCC6Q03468 1493 aa13.1□□□□□ -0.31
EPHA4-211ENST00000469354 ZEB1P37275 1124 aaPredicted RBP13.09□□□□□ -0.31
EPHA4-211ENST00000469354 CUL7Q14999 1698 aa13.09□□□□□ -0.31
EPHA4-211ENST00000469354 ABCA5Q8WWZ7 1642 aa13.09□□□□□ -0.31
EPHA4-211ENST00000469354 KANK4Q5T7N3 995 aaPredicted RBP13.08□□□□□ -0.32
EPHA4-211ENST00000469354 CCER1Q8TC90 406 aaPredicted RBP13.08□□□□□ -0.32
EPHA4-211ENST00000469354 TARBP1Q13395 1621 aaKnown RBP13.08□□□□□ -0.32
EPHA4-211ENST00000469354 AQRO60306 1485 aaKnown RBP eCLIP13.08□□□□□ -0.32
EPHA4-211ENST00000469354 HNRNPUL2Q1KMD3 747 aaKnown RBP13.07□□□□□ -0.32
EPHA4-211ENST00000469354 ATP1B4Q9UN42 357 aaPredicted RBP13.06□□□□□ -0.32
EPHA4-211ENST00000469354 FHOD3Q2V2M9 1422 aa13.02□□□□□ -0.33
EPHA4-211ENST00000469354 WDR62O43379 1518 aa13.01□□□□□ -0.33
EPHA4-211ENST00000469354 ZNF608Q9ULD9 1512 aaPredicted RBP13.01□□□□□ -0.33
EPHA4-211ENST00000469354 IFT140Q96RY7 1462 aa13□□□□□ -0.33
EPHA4-211ENST00000469354 CTTNBP2Q8WZ74 1663 aa12.99□□□□□ -0.33
EPHA4-211ENST00000469354 FHAD1B1AJZ9 1412 aa12.98□□□□□ -0.33
EPHA4-211ENST00000469354 PBRM1Q86U86 1689 aa12.97□□□□□ -0.33
EPHA4-211ENST00000469354 GRIN2BQ13224 1484 aa12.97□□□□□ -0.33
EPHA4-211ENST00000469354 EFCAB5A4FU69 1503 aa12.95□□□□□ -0.34
EPHA4-211ENST00000469354 TIMELESSQ9UNS1 1208 aa12.94□□□□□ -0.34
EPHA4-211ENST00000469354 PCF11O94913 1555 aaKnown RBP12.92□□□□□ -0.34
EPHA4-211ENST00000469354 THOC2Q8NI27 1593 aaKnown RBP12.92□□□□□ -0.34
EPHA4-211ENST00000469354 ADAMTS12P58397 1594 aa12.92□□□□□ -0.34
EPHA4-211ENST00000469354 TIAM1Q13009 1591 aa12.92□□□□□ -0.34
EPHA4-211ENST00000469354 ITGAEP38570 1179 aa12.91□□□□□ -0.34
EPHA4-211ENST00000469354 FBLN2P98095 1184 aa12.91□□□□□ -0.34
EPHA4-211ENST00000469354 FMN1Q68DA7 1419 aa12.9□□□□□ -0.34
EPHA4-211ENST00000469354 SNAPC4Q5SXM2 1469 aa12.9□□□□□ -0.34
EPHA4-211ENST00000469354 EIF4G3O43432 1585 aaKnown RBP12.89□□□□□ -0.35
EPHA4-211ENST00000469354 LRRC9Q6ZRR7 1453 aa12.89□□□□□ -0.35
EPHA4-211ENST00000469354 CASKIN1Q8WXD9 1431 aa12.89□□□□□ -0.35
EPHA4-211ENST00000469354 MAP3K1Q13233 1512 aa12.88□□□□□ -0.35
EPHA4-211ENST00000469354 FYCO1Q9BQS8 1478 aa12.88□□□□□ -0.35
EPHA4-211ENST00000469354 CCNB3Q8WWL7 1395 aa12.88□□□□□ -0.35
EPHA4-211ENST00000469354 CHMP7Q8WUX9 453 aaPredicted RBP12.87□□□□□ -0.35
EPHA4-211ENST00000469354 RRBP1Q9P2E9 1410 aaKnown RBP12.86□□□□□ -0.35
EPHA4-211ENST00000469354 SAMD9Q5K651 1589 aa12.86□□□□□ -0.35
EPHA4-211ENST00000469354 IQGAP2Q13576 1575 aa12.86□□□□□ -0.35
EPHA4-211ENST00000469354 KCNA4P22459 653 aa12.85□□□□□ -0.35
EPHA4-211ENST00000469354 PHLDB1Q86UU1 1377 aa12.84□□□□□ -0.35
EPHA4-211ENST00000469354 FAM50AQ14320 339 aaKnown RBP12.83□□□□□ -0.35
EPHA4-211ENST00000469354 CFAP43Q8NDM7 1665 aa12.82□□□□□ -0.36
EPHA4-211ENST00000469354 GRIN2AQ12879 1464 aa12.82□□□□□ -0.36
EPHA4-211ENST00000469354 ARID3CA6NKF2 412 aa12.82□□□□□ -0.36
EPHA4-211ENST00000469354 MTUS2Q5JR59 1369 aa12.81□□□□□ -0.36
EPHA4-211ENST00000469354 MAGI1Q96QZ7 1491 aaPredicted RBP12.8□□□□□ -0.36
EPHA4-211ENST00000469354 KIAA0586Q9BVV6 1533 aa12.8□□□□□ -0.36
EPHA4-211ENST00000469354 SYNJ2O15056 1496 aa12.78□□□□□ -0.36
EPHA4-211ENST00000469354 UGGT2Q9NYU1 1516 aa12.76□□□□□ -0.37
EPHA4-211ENST00000469354 AMER1Q5JTC6 1135 aaPredicted RBP12.76□□□□□ -0.37
EPHA4-211ENST00000469354 LRRIQ1Q96JM4 1722 aa12.74□□□□□ -0.37
EPHA4-211ENST00000469354 DISP1Q96F81 1524 aa12.73□□□□□ -0.37
EPHA4-211ENST00000469354 JPH4Q96JJ6 628 aa12.73□□□□□ -0.37
EPHA4-211ENST00000469354 CEP170Q5SW79 1584 aa12.73□□□□□ -0.37
EPHA4-211ENST00000469354 KIAA0556O60303 1618 aa12.71□□□□□ -0.38
EPHA4-211ENST00000469354 DHX57Q6P158 1386 aaKnown RBP12.71□□□□□ -0.38
EPHA4-211ENST00000469354 HECW1Q76N89 1606 aa12.7□□□□□ -0.38
EPHA4-211ENST00000469354 NCOA2Q15596 1464 aa12.7□□□□□ -0.38
EPHA4-211ENST00000469354 CCDC18Q5T9S5 1454 aa12.7□□□□□ -0.38
EPHA4-211ENST00000469354 EPRSP07814 1512 aaKnown RBP12.7□□□□□ -0.38
EPHA4-211ENST00000469354 CDK13Q14004 1512 aaKnown RBP12.7□□□□□ -0.38
EPHA4-211ENST00000469354 TULP1O00294 542 aaPredicted RBP12.7□□□□□ -0.38
EPHA4-211ENST00000469354 FGD6Q6ZV73 1430 aa12.69□□□□□ -0.38
EPHA4-211ENST00000469354 KLHL34Q8N239 644 aa12.69□□□□□ -0.38
EPHA4-211ENST00000469354 EIF5BO60841 1220 aaKnown RBP12.69□□□□□ -0.38
EPHA4-211ENST00000469354 RAB3GAP2Q9H2M9 1393 aa12.69□□□□□ -0.38
EPHA4-211ENST00000469354 NUP160Q12769 1436 aa12.69□□□□□ -0.38
EPHA4-211ENST00000469354 ARXQ96QS3 562 aa12.68□□□□□ -0.38
EPHA4-211ENST00000469354 MAGI3Q5TCQ9 1506 aa12.68□□□□□ -0.38
EPHA4-211ENST00000469354 EHBP1L1Q8N3D4 1523 aa12.67□□□□□ -0.38
EPHA4-211ENST00000469354 SUPT6HQ7KZ85 1726 aaKnown RBP12.66□□□□□ -0.38
EPHA4-211ENST00000469354 CARMIL2Q6F5E8 1435 aa12.66□□□□□ -0.38
EPHA4-211ENST00000469354 SETD5Q9C0A6 1442 aa12.66□□□□□ -0.38
EPHA4-211ENST00000469354 MYOM3Q5VTT5 1437 aa12.66□□□□□ -0.38
EPHA4-211ENST00000469354 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.63□□□□□ -0.39
EPHA4-211ENST00000469354 CLSPNQ9HAW4 1339 aa12.63□□□□□ -0.39
EPHA4-211ENST00000469354 NUP153P49790 1475 aaKnown RBP12.63□□□□□ -0.39
EPHA4-211ENST00000469354 PLB1Q6P1J6 1458 aa12.63□□□□□ -0.39
EPHA4-211ENST00000469354 CDK11AQ9UQ88 783 aaPredicted RBP12.63□□□□□ -0.39
EPHA4-211ENST00000469354 RAPGEF6Q8TEU7 1601 aa12.62□□□□□ -0.39
EPHA4-211ENST00000469354 CHIC2Q9UKJ5 165 aa12.59□□□□□ -0.39
EPHA4-211ENST00000469354 PTPRKQ15262 1439 aa12.59□□□□□ -0.39
EPHA4-211ENST00000469354 PRG4Q92954 1404 aaPredicted RBP12.59□□□□□ -0.39
EPHA4-211ENST00000469354 ARHGEF11O15085 1522 aa12.58□□□□□ -0.39
EPHA4-211ENST00000469354 ZNF316A6NFI3 1004 aaPredicted RBP12.58□□□□□ -0.4
EPHA4-211ENST00000469354 PLEKHG5O94827 1062 aa12.58□□□□□ -0.4
EPHA4-211ENST00000469354 PTPN23Q9H3S7 1636 aa12.58□□□□□ -0.4
EPHA4-211ENST00000469354 CHD1O14646 1710 aa12.58□□□□□ -0.4
EPHA4-211ENST00000469354 DIEXFQ68CQ4 756 aaKnown RBP12.56□□□□□ -0.4
EPHA4-211ENST00000469354 RRP7BPQ9NSQ0 103 aa12.56□□□□□ -0.4
EPHA4-211ENST00000469354 PTPRGP23470 1445 aa12.55□□□□□ -0.4
EPHA4-211ENST00000469354 NEUROD1Q13562 356 aa12.54□□□□□ -0.4
EPHA4-211ENST00000469354 ZNF644Q9H582 1327 aaPredicted RBP12.53□□□□□ -0.4
EPHA4-211ENST00000469354 PLEKHD1A6NEE1 506 aa12.53□□□□□ -0.4
EPHA4-211ENST00000469354 TROQ12816 1431 aaPredicted RBP12.53□□□□□ -0.4
EPHA4-211ENST00000469354 MIA2Q96PC5 1412 aa12.53□□□□□ -0.4
EPHA4-211ENST00000469354 SIN3AQ96ST3 1273 aa12.52□□□□□ -0.4
EPHA4-211ENST00000469354 HFM1A2PYH4 1435 aa12.52□□□□□ -0.4
EPHA4-211ENST00000469354 MAPKBP1O60336 1514 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms