RNA–Protein interactions for RNA: ENST00000468792.1

COL6A3-208, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 329 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-208ENST00000468792 IFT140Q96RY7 1462 aa11.68□□□□□ -0.54
COL6A3-208ENST00000468792 FHAD1B1AJZ9 1412 aa11.67□□□□□ -0.54
COL6A3-208ENST00000468792 PPARGC1BQ86YN6 1023 aaKnown RBP11.66□□□□□ -0.54
COL6A3-208ENST00000468792 TDRD9Q8NDG6 1382 aaKnown RBP11.66□□□□□ -0.54
COL6A3-208ENST00000468792 AQRO60306 1485 aaKnown RBP eCLIP11.64□□□□□ -0.55
COL6A3-208ENST00000468792 CTTNBP2Q8WZ74 1663 aa11.64□□□□□ -0.55
COL6A3-208ENST00000468792 GRIN2BQ13224 1484 aa11.62□□□□□ -0.55
COL6A3-208ENST00000468792 PBRM1Q86U86 1689 aa11.59□□□□□ -0.55
COL6A3-208ENST00000468792 ADAMTS12P58397 1594 aa11.58□□□□□ -0.55
COL6A3-208ENST00000468792 SAMD9Q5K651 1589 aa11.58□□□□□ -0.55
COL6A3-208ENST00000468792 THOC2Q8NI27 1593 aaKnown RBP11.58□□□□□ -0.55
COL6A3-208ENST00000468792 FMN1Q68DA7 1419 aa11.58□□□□□ -0.56
COL6A3-208ENST00000468792 CASKIN1Q8WXD9 1431 aa11.58□□□□□ -0.56
COL6A3-208ENST00000468792 RRBP1Q9P2E9 1410 aaKnown RBP11.58□□□□□ -0.56
COL6A3-208ENST00000468792 FYCO1Q9BQS8 1478 aa11.57□□□□□ -0.56
COL6A3-208ENST00000468792 TIAM1Q13009 1591 aa11.57□□□□□ -0.56
COL6A3-208ENST00000468792 ERCC6Q03468 1493 aa11.57□□□□□ -0.56
COL6A3-208ENST00000468792 RANGAP1P46060 587 aaPredicted RBP11.56□□□□□ -0.56
COL6A3-208ENST00000468792 KANK4Q5T7N3 995 aaPredicted RBP11.54□□□□□ -0.56
COL6A3-208ENST00000468792 LRRC9Q6ZRR7 1453 aa11.53□□□□□ -0.56
COL6A3-208ENST00000468792 CFAP43Q8NDM7 1665 aa11.52□□□□□ -0.56
COL6A3-208ENST00000468792 MAGI1Q96QZ7 1491 aaPredicted RBP11.52□□□□□ -0.56
COL6A3-208ENST00000468792 ZNF608Q9ULD9 1512 aaPredicted RBP11.51□□□□□ -0.57
COL6A3-208ENST00000468792 FHOD3Q2V2M9 1422 aa11.51□□□□□ -0.57
COL6A3-208ENST00000468792 SNAPC4Q5SXM2 1469 aa11.51□□□□□ -0.57
COL6A3-208ENST00000468792 UGGT2Q9NYU1 1516 aa11.5□□□□□ -0.57
COL6A3-208ENST00000468792 PCF11O94913 1555 aaKnown RBP11.5□□□□□ -0.57
COL6A3-208ENST00000468792 KIAA0586Q9BVV6 1533 aa11.5□□□□□ -0.57
COL6A3-208ENST00000468792 EIF4G3O43432 1585 aaKnown RBP11.5□□□□□ -0.57
COL6A3-208ENST00000468792 IQGAP2Q13576 1575 aa11.5□□□□□ -0.57
COL6A3-208ENST00000468792 PIAS4Q8N2W9 510 aaPredicted RBP11.49□□□□□ -0.57
COL6A3-208ENST00000468792 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.49□□□□□ -0.57
COL6A3-208ENST00000468792 CCER1Q8TC90 406 aaPredicted RBP11.48□□□□□ -0.57
COL6A3-208ENST00000468792 TTBK1Q5TCY1 1321 aaPredicted RBP11.48□□□□□ -0.57
COL6A3-208ENST00000468792 CCNB3Q8WWL7 1395 aa11.48□□□□□ -0.57
COL6A3-208ENST00000468792 GRIN2AQ12879 1464 aa11.46□□□□□ -0.57
COL6A3-208ENST00000468792 CLSPNQ9HAW4 1339 aa11.46□□□□□ -0.57
COL6A3-208ENST00000468792 SYNJ2O15056 1496 aa11.45□□□□□ -0.58
COL6A3-208ENST00000468792 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.45□□□□□ -0.58
COL6A3-208ENST00000468792 KCNA4P22459 653 aa11.45□□□□□ -0.58
COL6A3-208ENST00000468792 CCDC18Q5T9S5 1454 aa11.44□□□□□ -0.58
COL6A3-208ENST00000468792 P3H3Q8IVL6 736 aa11.42□□□□□ -0.58
COL6A3-208ENST00000468792 NUP160Q12769 1436 aa11.41□□□□□ -0.58
COL6A3-208ENST00000468792 HNRNPUL2Q1KMD3 747 aaKnown RBP11.4□□□□□ -0.58
COL6A3-208ENST00000468792 PHLDB1Q86UU1 1377 aa11.4□□□□□ -0.59
COL6A3-208ENST00000468792 DISP1Q96F81 1524 aa11.39□□□□□ -0.59
COL6A3-208ENST00000468792 HECW1Q76N89 1606 aa11.38□□□□□ -0.59
COL6A3-208ENST00000468792 EHBP1L1Q8N3D4 1523 aa11.38□□□□□ -0.59
COL6A3-208ENST00000468792 KIAA0556O60303 1618 aa11.38□□□□□ -0.59
COL6A3-208ENST00000468792 ARHGEF11O15085 1522 aa11.37□□□□□ -0.59
COL6A3-208ENST00000468792 CHMP7Q8WUX9 453 aaPredicted RBP11.36□□□□□ -0.59
COL6A3-208ENST00000468792 LRRIQ1Q96JM4 1722 aa11.35□□□□□ -0.59
COL6A3-208ENST00000468792 MTUS2Q5JR59 1369 aa11.35□□□□□ -0.59
COL6A3-208ENST00000468792 CEP170Q5SW79 1584 aa11.35□□□□□ -0.59
COL6A3-208ENST00000468792 EPRSP07814 1512 aaKnown RBP11.35□□□□□ -0.59
COL6A3-208ENST00000468792 SUPT6HQ7KZ85 1726 aaKnown RBP11.34□□□□□ -0.59
COL6A3-208ENST00000468792 FGD6Q6ZV73 1430 aa11.34□□□□□ -0.59
COL6A3-208ENST00000468792 CARMIL2Q6F5E8 1435 aa11.33□□□□□ -0.6
COL6A3-208ENST00000468792 DHX57Q6P158 1386 aaKnown RBP11.32□□□□□ -0.6
COL6A3-208ENST00000468792 ATP1B4Q9UN42 357 aaPredicted RBP11.32□□□□□ -0.6
COL6A3-208ENST00000468792 MYOM3Q5VTT5 1437 aa11.32□□□□□ -0.6
COL6A3-208ENST00000468792 NCOA2Q15596 1464 aa11.32□□□□□ -0.6
COL6A3-208ENST00000468792 MIA2Q96PC5 1412 aa11.3□□□□□ -0.6
COL6A3-208ENST00000468792 SETD5Q9C0A6 1442 aa11.3□□□□□ -0.6
COL6A3-208ENST00000468792 JPH4Q96JJ6 628 aa11.3□□□□□ -0.6
COL6A3-208ENST00000468792 PPP4R3CPQ6ZMV5 832 aa11.29□□□□□ -0.6
COL6A3-208ENST00000468792 TCOF1Q13428 1488 aaKnown RBP11.29□□□□□ -0.6
COL6A3-208ENST00000468792 RAPGEF6Q8TEU7 1601 aa11.28□□□□□ -0.6
COL6A3-208ENST00000468792 MAGI3Q5TCQ9 1506 aa11.28□□□□□ -0.6
COL6A3-208ENST00000468792 NUP153P49790 1475 aaKnown RBP11.27□□□□□ -0.6
COL6A3-208ENST00000468792 CDK11AQ9UQ88 783 aaPredicted RBP11.27□□□□□ -0.61
COL6A3-208ENST00000468792 ACIN1Q9UKV3 1341 aaKnown RBP11.27□□□□□ -0.61
COL6A3-208ENST00000468792 RAB3GAP2Q9H2M9 1393 aa11.26□□□□□ -0.61
COL6A3-208ENST00000468792 AKNAQ7Z591 1439 aa11.25□□□□□ -0.61
COL6A3-208ENST00000468792 FAM50AQ14320 339 aaKnown RBP11.24□□□□□ -0.61
COL6A3-208ENST00000468792 HFM1A2PYH4 1435 aa11.24□□□□□ -0.61
COL6A3-208ENST00000468792 ABCA8O94911 1581 aa11.23□□□□□ -0.61
COL6A3-208ENST00000468792 PTPN23Q9H3S7 1636 aa11.23□□□□□ -0.61
COL6A3-208ENST00000468792 SHROOM2Q13796 1616 aa11.22□□□□□ -0.61
COL6A3-208ENST00000468792 CDK13Q14004 1512 aaKnown RBP11.22□□□□□ -0.61
COL6A3-208ENST00000468792 TIMELESSQ9UNS1 1208 aa11.22□□□□□ -0.61
COL6A3-208ENST00000468792 TROQ12816 1431 aaPredicted RBP11.21□□□□□ -0.61
COL6A3-208ENST00000468792 FBLN2P98095 1184 aa11.21□□□□□ -0.61
COL6A3-208ENST00000468792 ADCY10Q96PN6 1610 aa11.2□□□□□ -0.62
COL6A3-208ENST00000468792 NCBP3Q53F19 620 aaKnown RBP11.19□□□□□ -0.62
COL6A3-208ENST00000468792 PLB1Q6P1J6 1458 aa11.19□□□□□ -0.62
COL6A3-208ENST00000468792 PTPRKQ15262 1439 aa11.18□□□□□ -0.62
COL6A3-208ENST00000468792 ITGAEP38570 1179 aa11.18□□□□□ -0.62
COL6A3-208ENST00000468792 PRG4Q92954 1404 aaPredicted RBP11.18□□□□□ -0.62
COL6A3-208ENST00000468792 ROCK1Q13464 1354 aa11.17□□□□□ -0.62
COL6A3-208ENST00000468792 ZNF316A6NFI3 1004 aaPredicted RBP11.17□□□□□ -0.62
COL6A3-208ENST00000468792 MAPKBP1O60336 1514 aa11.17□□□□□ -0.62
COL6A3-208ENST00000468792 CHD1O14646 1710 aa11.17□□□□□ -0.62
COL6A3-208ENST00000468792 NAIPQ13075 1403 aa11.17□□□□□ -0.62
COL6A3-208ENST00000468792 PTPRGP23470 1445 aa11.16□□□□□ -0.62
COL6A3-208ENST00000468792 UACAQ9BZF9 1416 aa11.16□□□□□ -0.62
COL6A3-208ENST00000468792 ATP10BO94823 1461 aa11.14□□□□□ -0.63
COL6A3-208ENST00000468792 CLASP1Q7Z460 1538 aa11.14□□□□□ -0.63
COL6A3-208ENST00000468792 ITSN2Q9NZM3 1697 aa11.14□□□□□ -0.63
COL6A3-208ENST00000468792 GCC2Q8IWJ2 1684 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms