RNA–Protein interactions for RNA: ENST00000468300.5

BRCA1-208, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best) BASIC

Gene BRCA1, Length 3,273 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-208ENST00000468300 GRIN2AQ12879 1464 aa13.12□□□□□ -0.31
BRCA1-208ENST00000468300 SYNJ2O15056 1496 aa13.12□□□□□ -0.31
BRCA1-208ENST00000468300 MYT1Q01538 1121 aa13.12□□□□□ -0.31
BRCA1-208ENST00000468300 VPS8Q8N3P4 1428 aa13.11□□□□□ -0.31
BRCA1-208ENST00000468300 SAMD9Q5K651 1589 aa13.11□□□□□ -0.31
BRCA1-208ENST00000468300 RANGAP1P46060 587 aaPredicted RBP13.1□□□□□ -0.31
BRCA1-208ENST00000468300 CEP170Q5SW79 1584 aa13.1□□□□□ -0.31
BRCA1-208ENST00000468300 IQGAP2Q13576 1575 aa13.07□□□□□ -0.32
BRCA1-208ENST00000468300 EFCAB5A4FU69 1503 aa13.07□□□□□ -0.32
BRCA1-208ENST00000468300 CHD1O14646 1710 aa13.06□□□□□ -0.32
BRCA1-208ENST00000468300 PELP1Q8IZL8 1130 aaKnown RBP13.06□□□□□ -0.32
BRCA1-208ENST00000468300 NUP160Q12769 1436 aa13.06□□□□□ -0.32
BRCA1-208ENST00000468300 KIAA0586Q9BVV6 1533 aa13.04□□□□□ -0.32
BRCA1-208ENST00000468300 UGGT2Q9NYU1 1516 aa13.04□□□□□ -0.32
BRCA1-208ENST00000468300 FHOD3Q2V2M9 1422 aa13.02□□□□□ -0.33
BRCA1-208ENST00000468300 DISP1Q96F81 1524 aa13□□□□□ -0.33
BRCA1-208ENST00000468300 PPARGC1BQ86YN6 1023 aaKnown RBP13□□□□□ -0.33
BRCA1-208ENST00000468300 PCF11O94913 1555 aaKnown RBP12.99□□□□□ -0.33
BRCA1-208ENST00000468300 LRRIQ1Q96JM4 1722 aa12.99□□□□□ -0.33
BRCA1-208ENST00000468300 CHMP7Q8WUX9 453 aaPredicted RBP12.99□□□□□ -0.33
BRCA1-208ENST00000468300 KIAA0556O60303 1618 aa12.97□□□□□ -0.33
BRCA1-208ENST00000468300 P3H3Q8IVL6 736 aa12.97□□□□□ -0.33
BRCA1-208ENST00000468300 FBLN2P98095 1184 aa12.94□□□□□ -0.34
BRCA1-208ENST00000468300 SHROOM2Q13796 1616 aa12.94□□□□□ -0.34
BRCA1-208ENST00000468300 CFAP43Q8NDM7 1665 aa12.94□□□□□ -0.34
BRCA1-208ENST00000468300 MAP3K1Q13233 1512 aa12.93□□□□□ -0.34
BRCA1-208ENST00000468300 CASKIN1Q8WXD9 1431 aa12.93□□□□□ -0.34
BRCA1-208ENST00000468300 FYCO1Q9BQS8 1478 aa12.92□□□□□ -0.34
BRCA1-208ENST00000468300 TIAM1Q13009 1591 aa12.92□□□□□ -0.34
BRCA1-208ENST00000468300 TRIM26Q12899 539 aaPredicted RBP12.92□□□□□ -0.34
BRCA1-208ENST00000468300 CLASP1Q7Z460 1538 aa12.91□□□□□ -0.34
BRCA1-208ENST00000468300 KANK4Q5T7N3 995 aaPredicted RBP12.91□□□□□ -0.34
BRCA1-208ENST00000468300 FMN1Q68DA7 1419 aa12.91□□□□□ -0.34
BRCA1-208ENST00000468300 PCGF6Q9BYE7 350 aa12.91□□□□□ -0.34
BRCA1-208ENST00000468300 PRKCSHP14314 528 aaPredicted RBP12.9□□□□□ -0.34
BRCA1-208ENST00000468300 JPH4Q96JJ6 628 aa12.87□□□□□ -0.35
BRCA1-208ENST00000468300 ERCC6L2Q5T890 1561 aa12.85□□□□□ -0.35
BRCA1-208ENST00000468300 TTBK1Q5TCY1 1321 aaPredicted RBP12.85□□□□□ -0.35
BRCA1-208ENST00000468300 LRRC9Q6ZRR7 1453 aa12.85□□□□□ -0.35
BRCA1-208ENST00000468300 HECW1Q76N89 1606 aa12.83□□□□□ -0.36
BRCA1-208ENST00000468300 RAPGEF6Q8TEU7 1601 aa12.83□□□□□ -0.36
BRCA1-208ENST00000468300 MAGI3Q5TCQ9 1506 aa12.82□□□□□ -0.36
BRCA1-208ENST00000468300 PRG4Q92954 1404 aaPredicted RBP12.82□□□□□ -0.36
BRCA1-208ENST00000468300 NUP153P49790 1475 aaKnown RBP12.81□□□□□ -0.36
BRCA1-208ENST00000468300 ABCA8O94911 1581 aa12.8□□□□□ -0.36
BRCA1-208ENST00000468300 EPRSP07814 1512 aaKnown RBP12.8□□□□□ -0.36
BRCA1-208ENST00000468300 PLB1Q6P1J6 1458 aa12.79□□□□□ -0.36
BRCA1-208ENST00000468300 CARMIL2Q6F5E8 1435 aa12.79□□□□□ -0.36
BRCA1-208ENST00000468300 APLP2Q06481 763 aa12.79□□□□□ -0.36
BRCA1-208ENST00000468300 CDK13Q14004 1512 aaKnown RBP12.78□□□□□ -0.36
BRCA1-208ENST00000468300 CCDC18Q5T9S5 1454 aa12.77□□□□□ -0.36
BRCA1-208ENST00000468300 ARHGEF11O15085 1522 aa12.75□□□□□ -0.37
BRCA1-208ENST00000468300 RRBP1Q9P2E9 1410 aaKnown RBP12.75□□□□□ -0.37
BRCA1-208ENST00000468300 PHLDB1Q86UU1 1377 aa12.74□□□□□ -0.37
BRCA1-208ENST00000468300 ATP1B4Q9UN42 357 aaPredicted RBP12.73□□□□□ -0.37
BRCA1-208ENST00000468300 EHBP1L1Q8N3D4 1523 aa12.72□□□□□ -0.37
BRCA1-208ENST00000468300 PTPRGP23470 1445 aa12.7□□□□□ -0.38
BRCA1-208ENST00000468300 SUPT6HQ7KZ85 1726 aaKnown RBP12.7□□□□□ -0.38
BRCA1-208ENST00000468300 ATP10BO94823 1461 aa12.69□□□□□ -0.38
BRCA1-208ENST00000468300 NCOA2Q15596 1464 aa12.68□□□□□ -0.38
BRCA1-208ENST00000468300 ADCY10Q96PN6 1610 aa12.67□□□□□ -0.38
BRCA1-208ENST00000468300 ARID3CA6NKF2 412 aa12.66□□□□□ -0.38
BRCA1-208ENST00000468300 DAXXQ9UER7 740 aaPredicted RBP12.66□□□□□ -0.38
BRCA1-208ENST00000468300 MTUS2Q5JR59 1369 aa12.66□□□□□ -0.38
BRCA1-208ENST00000468300 UACAQ9BZF9 1416 aa12.66□□□□□ -0.38
BRCA1-208ENST00000468300 OSCARQ8IYS5 282 aa12.66□□□□□ -0.38
BRCA1-208ENST00000468300 ABCC2Q92887 1545 aa12.66□□□□□ -0.38
BRCA1-208ENST00000468300 CCNB3Q8WWL7 1395 aa12.65□□□□□ -0.38
BRCA1-208ENST00000468300 KIF14Q15058 1648 aa12.65□□□□□ -0.39
BRCA1-208ENST00000468300 ERICH6Q7L0X2 663 aa12.64□□□□□ -0.39
BRCA1-208ENST00000468300 UHRF1BP1LA0JNW5 1464 aa12.64□□□□□ -0.39
BRCA1-208ENST00000468300 TROQ12816 1431 aaPredicted RBP12.62□□□□□ -0.39
BRCA1-208ENST00000468300 FGD6Q6ZV73 1430 aa12.62□□□□□ -0.39
BRCA1-208ENST00000468300 MYOM3Q5VTT5 1437 aa12.61□□□□□ -0.39
BRCA1-208ENST00000468300 ZCCHC11Q5TAX3 1644 aaKnown RBP12.61□□□□□ -0.39
BRCA1-208ENST00000468300 KDM5BQ9UGL1 1544 aa12.6□□□□□ -0.39
BRCA1-208ENST00000468300 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.6□□□□□ -0.39
BRCA1-208ENST00000468300 PTPN23Q9H3S7 1636 aa12.59□□□□□ -0.39
BRCA1-208ENST00000468300 TCOF1Q13428 1488 aaKnown RBP12.59□□□□□ -0.39
BRCA1-208ENST00000468300 ABCC10Q5T3U5 1492 aa12.59□□□□□ -0.39
BRCA1-208ENST00000468300 CDC42BPAQ5VT25 1732 aa12.57□□□□□ -0.4
BRCA1-208ENST00000468300 HNRNPUL2Q1KMD3 747 aaKnown RBP12.56□□□□□ -0.4
BRCA1-208ENST00000468300 PTPRKQ15262 1439 aa12.55□□□□□ -0.4
BRCA1-208ENST00000468300 GPATCH8Q9UKJ3 1502 aaKnown RBP12.54□□□□□ -0.4
BRCA1-208ENST00000468300 MIA2Q96PC5 1412 aa12.54□□□□□ -0.4
BRCA1-208ENST00000468300 ITSN2Q9NZM3 1697 aa12.53□□□□□ -0.4
BRCA1-208ENST00000468300 TTC37Q6PGP7 1564 aa12.52□□□□□ -0.4
BRCA1-208ENST00000468300 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.52□□□□□ -0.4
BRCA1-208ENST00000468300 CDK11AQ9UQ88 783 aaPredicted RBP12.52□□□□□ -0.4
BRCA1-208ENST00000468300 HRCP23327 699 aa12.52□□□□□ -0.41
BRCA1-208ENST00000468300 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.52□□□□□ -0.41
BRCA1-208ENST00000468300 RIMBP3CA6NJZ7 1639 aa12.52□□□□□ -0.41
BRCA1-208ENST00000468300 RIMBP3BA6NNM3 1639 aa12.52□□□□□ -0.41
BRCA1-208ENST00000468300 RIMBP3Q9UFD9 1639 aa12.52□□□□□ -0.41
BRCA1-208ENST00000468300 CDC42BPBQ9Y5S2 1711 aa12.52□□□□□ -0.41
BRCA1-208ENST00000468300 PLEKHD1A6NEE1 506 aa12.5□□□□□ -0.41
BRCA1-208ENST00000468300 PREX2Q70Z35 1606 aa12.49□□□□□ -0.41
BRCA1-208ENST00000468300 FAM50AQ14320 339 aaKnown RBP12.49□□□□□ -0.41
BRCA1-208ENST00000468300 ZNF644Q9H582 1327 aaPredicted RBP12.48□□□□□ -0.41
BRCA1-208ENST00000468300 DNMT1P26358 1616 aaKnown RBP12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 117.7 ms