RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 IGF1RP08069 1367 aa30.51■■■□□ 2.47
COL7A1-205ENST00000465238 CUL7Q14999 1698 aa30.49■■■□□ 2.47
COL7A1-205ENST00000465238 KIAA0586Q9BVV6 1533 aa30.4■■■□□ 2.46
COL7A1-205ENST00000465238 CARMIL1Q5VZK9 1371 aa30.31■■■□□ 2.44
COL7A1-205ENST00000465238 KIF13AQ9H1H9 1805 aa30.23■■■□□ 2.43
COL7A1-205ENST00000465238 NPM1P06748 294 aaKnown RBP eCLIP30.22■■■□□ 2.43
COL7A1-205ENST00000465238 ADCY10Q96PN6 1610 aa30.19■■■□□ 2.42
COL7A1-205ENST00000465238 MAPKBP1O60336 1514 aa30.17■■■□□ 2.42
COL7A1-205ENST00000465238 ABCC10Q5T3U5 1492 aa30.12■■■□□ 2.41
COL7A1-205ENST00000465238 IQGAP2Q13576 1575 aa30.11■■■□□ 2.41
COL7A1-205ENST00000465238 CARMIL2Q6F5E8 1435 aa30.11■■■□□ 2.41
COL7A1-205ENST00000465238 PTPRGP23470 1445 aa30.1■■■□□ 2.41
COL7A1-205ENST00000465238 FAM69CQ0P6D2 419 aa30.07■■■□□ 2.4
COL7A1-205ENST00000465238 RAPGEF2Q9Y4G8 1499 aa30.06■■■□□ 2.4
COL7A1-205ENST00000465238 TNIKQ9UKE5 1360 aa30.05■■■□□ 2.4
COL7A1-205ENST00000465238 DIP2BQ9P265 1576 aa30.04■■■□□ 2.4
COL7A1-205ENST00000465238 TTBK1Q5TCY1 1321 aaPredicted RBP29.97■■■□□ 2.39
COL7A1-205ENST00000465238 AEBP2Q6ZN18 517 aaPredicted RBP29.95■■■□□ 2.39
COL7A1-205ENST00000465238 DISP1Q96F81 1524 aa29.95■■■□□ 2.38
COL7A1-205ENST00000465238 ABCC2Q92887 1545 aa29.93■■■□□ 2.38
COL7A1-205ENST00000465238 UGGT2Q9NYU1 1516 aa29.93■■■□□ 2.38
COL7A1-205ENST00000465238 UHRF1BP1LA0JNW5 1464 aa29.9■■■□□ 2.38
COL7A1-205ENST00000465238 UACAQ9BZF9 1416 aa29.87■■■□□ 2.37
COL7A1-205ENST00000465238 KIAA0556O60303 1618 aa29.84■■■□□ 2.37
COL7A1-205ENST00000465238 CTTNBP2Q8WZ74 1663 aa29.82■■■□□ 2.36
COL7A1-205ENST00000465238 PLB1Q6P1J6 1458 aa29.82■■■□□ 2.36
COL7A1-205ENST00000465238 TSPOAP1O95153 1857 aa29.82■■■□□ 2.36
COL7A1-205ENST00000465238 ASXL2Q76L83 1435 aa29.8■■■□□ 2.36
COL7A1-205ENST00000465238 KDM6BO15054 1643 aa29.77■■■□□ 2.36
COL7A1-205ENST00000465238 PRXQ9BXM0 1461 aa29.76■■■□□ 2.35
COL7A1-205ENST00000465238 KDM5BQ9UGL1 1544 aa29.76■■■□□ 2.35
COL7A1-205ENST00000465238 GLI2P10070 1586 aa29.74■■■□□ 2.35
COL7A1-205ENST00000465238 GOLGA3Q08378 1498 aa29.72■■■□□ 2.35
COL7A1-205ENST00000465238 CHIC1Q5VXU3 224 aa29.7■■■□□ 2.35
COL7A1-205ENST00000465238 ZCCHC11Q5TAX3 1644 aaKnown RBP29.68■■■□□ 2.34
COL7A1-205ENST00000465238 EPRSP07814 1512 aaKnown RBP29.63■■■□□ 2.33
COL7A1-205ENST00000465238 PPRC1Q5VV67 1664 aaKnown RBP29.63■■■□□ 2.33
COL7A1-205ENST00000465238 MAP3K4Q9Y6R4 1608 aa29.57■■■□□ 2.32
COL7A1-205ENST00000465238 ABCA8O94911 1581 aa29.56■■■□□ 2.32
COL7A1-205ENST00000465238 CSRNP3Q8WYN3 585 aa29.55■■■□□ 2.32
COL7A1-205ENST00000465238 WDR7Q9Y4E6 1490 aa29.55■■■□□ 2.32
COL7A1-205ENST00000465238 TEX14Q8IWB6 1497 aa29.5■■■□□ 2.31
COL7A1-205ENST00000465238 EEA1Q15075 1411 aa29.47■■■□□ 2.31
COL7A1-205ENST00000465238 FAM9AQ8IZU1 332 aaPredicted RBP29.47■■■□□ 2.31
COL7A1-205ENST00000465238 KDM4FA0A1W2PPD8 638 aa29.4■■■□□ 2.3
COL7A1-205ENST00000465238 COL17A1Q9UMD9 1497 aaPredicted RBP29.4■■■□□ 2.3
COL7A1-205ENST00000465238 SAMD9Q5K651 1589 aa29.39■■■□□ 2.3
COL7A1-205ENST00000465238 P3H3Q8IVL6 736 aa29.39■■■□□ 2.3
COL7A1-205ENST00000465238 CFAP43Q8NDM7 1665 aa29.38■■■□□ 2.29
COL7A1-205ENST00000465238 KCNH8Q96L42 1107 aa29.36■■■□□ 2.29
COL7A1-205ENST00000465238 CD109Q6YHK3 1445 aa29.35■■■□□ 2.29
COL7A1-205ENST00000465238 MAGI3Q5TCQ9 1506 aa29.35■■■□□ 2.29
COL7A1-205ENST00000465238 ATP10BO94823 1461 aa29.3■■■□□ 2.28
COL7A1-205ENST00000465238 ARID3CA6NKF2 412 aa29.26■■■□□ 2.27
COL7A1-205ENST00000465238 RAPGEF6Q8TEU7 1601 aa29.26■■■□□ 2.27
COL7A1-205ENST00000465238 KIF21BO75037 1637 aa29.22■■■□□ 2.27
COL7A1-205ENST00000465238 ADGRL1O94910 1474 aa29.21■■■□□ 2.27
COL7A1-205ENST00000465238 RANGAP1P46060 587 aaPredicted RBP29.17■■■□□ 2.26
COL7A1-205ENST00000465238 ABCA9Q8IUA7 1624 aa29.16■■■□□ 2.26
COL7A1-205ENST00000465238 FHOD3Q2V2M9 1422 aa29.16■■■□□ 2.26
COL7A1-205ENST00000465238 NUP153P49790 1475 aaKnown RBP29.14■■■□□ 2.26
COL7A1-205ENST00000465238 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP29.13■■■□□ 2.25
COL7A1-205ENST00000465238 HNRNPUL2Q1KMD3 747 aaKnown RBP29.13■■■□□ 2.25
COL7A1-205ENST00000465238 EFCAB5A4FU69 1503 aa29.13■■■□□ 2.25
COL7A1-205ENST00000465238 ARAP3Q8WWN8 1544 aa29.11■■■□□ 2.25
COL7A1-205ENST00000465238 PHLDB1Q86UU1 1377 aa29.09■■■□□ 2.25
COL7A1-205ENST00000465238 NEO1Q92859 1461 aa29.02■■■□□ 2.24
COL7A1-205ENST00000465238 PLEKHD1A6NEE1 506 aa29■■■□□ 2.23
COL7A1-205ENST00000465238 UBTFP17480 764 aaKnown RBP28.97■■■□□ 2.23
COL7A1-205ENST00000465238 EHMT2Q96KQ7 1210 aa28.94■■■□□ 2.22
COL7A1-205ENST00000465238 RAPGEF3O95398 923 aa28.9■■■□□ 2.22
COL7A1-205ENST00000465238 FMN1Q68DA7 1419 aa28.87■■■□□ 2.21
COL7A1-205ENST00000465238 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP28.86■■■□□ 2.21
COL7A1-205ENST00000465238 CDK13Q14004 1512 aaKnown RBP28.85■■■□□ 2.21
COL7A1-205ENST00000465238 ARHGAP35Q9NRY4 1499 aa28.85■■■□□ 2.21
COL7A1-205ENST00000465238 FRMPD1Q5SYB0 1578 aa28.84■■■□□ 2.21
COL7A1-205ENST00000465238 CFAP74Q9C0B2 1584 aa28.84■■■□□ 2.21
COL7A1-205ENST00000465238 FANCAO15360 1455 aa28.82■■■□□ 2.2
COL7A1-205ENST00000465238 TTC37Q6PGP7 1564 aa28.82■■■□□ 2.2
COL7A1-205ENST00000465238 HECW1Q76N89 1606 aa28.82■■■□□ 2.2
COL7A1-205ENST00000465238 AKNAQ7Z591 1439 aa28.8■■■□□ 2.2
COL7A1-205ENST00000465238 DENND4BO75064 1496 aaPredicted RBP28.79■■■□□ 2.2
COL7A1-205ENST00000465238 HECW2Q9P2P5 1572 aa28.78■■■□□ 2.2
COL7A1-205ENST00000465238 RICTORQ6R327 1708 aa28.77■■■□□ 2.2
COL7A1-205ENST00000465238 ATP1B4Q9UN42 357 aaPredicted RBP28.76■■■□□ 2.19
COL7A1-205ENST00000465238 ADAMTSL3P82987 1691 aa28.74■■■□□ 2.19
COL7A1-205ENST00000465238 CDK11AQ9UQ88 783 aaPredicted RBP28.73■■■□□ 2.19
COL7A1-205ENST00000465238 ARHGEF40Q8TER5 1519 aa28.71■■■□□ 2.19
COL7A1-205ENST00000465238 PLCH2O75038 1416 aa28.7■■■□□ 2.19
COL7A1-205ENST00000465238 BCORL1Q5H9F3 1711 aa28.68■■■□□ 2.18
COL7A1-205ENST00000465238 ZMYM4Q5VZL5 1548 aa28.68■■■□□ 2.18
COL7A1-205ENST00000465238 ARID4BQ4LE39 1312 aaPredicted RBP28.68■■■□□ 2.18
COL7A1-205ENST00000465238 PTPRMP28827 1452 aa28.65■■■□□ 2.18
COL7A1-205ENST00000465238 MYO5CQ9NQX4 1742 aa28.64■■■□□ 2.18
COL7A1-205ENST00000465238 KIF14Q15058 1648 aa28.62■■■□□ 2.17
COL7A1-205ENST00000465238 TROQ12816 1431 aaPredicted RBP28.62■■■□□ 2.17
COL7A1-205ENST00000465238 MAGI2Q86UL8 1455 aa28.62■■■□□ 2.17
COL7A1-205ENST00000465238 SCAPERQ9BY12 1400 aa28.6■■■□□ 2.17
COL7A1-205ENST00000465238 LRRIQ1Q96JM4 1722 aa28.6■■■□□ 2.17
COL7A1-205ENST00000465238 ZFYVE16Q7Z3T8 1539 aa28.6■■■□□ 2.17
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms