RNA–Protein interactions for RNA: ENST00000465132.1

CPSF4-209, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 927 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-209ENST00000465132 KIF27Q86VH2 1401 aa29.88■■■□□ 2.37
CPSF4-209ENST00000465132 KIAA0586Q9BVV6 1533 aa29.81■■■□□ 2.36
CPSF4-209ENST00000465132 CUL7Q14999 1698 aa29.79■■■□□ 2.36
CPSF4-209ENST00000465132 KIF13AQ9H1H9 1805 aa29.73■■■□□ 2.35
CPSF4-209ENST00000465132 NPM1P06748 294 aaKnown RBP eCLIP29.72■■■□□ 2.35
CPSF4-209ENST00000465132 AEBP2Q6ZN18 517 aaPredicted RBP29.72■■■□□ 2.35
CPSF4-209ENST00000465132 CARMIL1Q5VZK9 1371 aa29.68■■■□□ 2.34
CPSF4-209ENST00000465132 ADCY10Q96PN6 1610 aa29.67■■■□□ 2.34
CPSF4-209ENST00000465132 MAPKBP1O60336 1514 aa29.66■■■□□ 2.34
CPSF4-209ENST00000465132 ABCC10Q5T3U5 1492 aa29.66■■■□□ 2.34
CPSF4-209ENST00000465132 FAM69CQ0P6D2 419 aa29.65■■■□□ 2.34
CPSF4-209ENST00000465132 DIP2BQ9P265 1576 aa29.56■■■□□ 2.32
CPSF4-209ENST00000465132 PTPRGP23470 1445 aa29.55■■■□□ 2.32
CPSF4-209ENST00000465132 CARMIL2Q6F5E8 1435 aa29.51■■■□□ 2.31
CPSF4-209ENST00000465132 TNIKQ9UKE5 1360 aa29.49■■■□□ 2.31
CPSF4-209ENST00000465132 IQGAP2Q13576 1575 aa29.47■■■□□ 2.31
CPSF4-209ENST00000465132 TTBK1Q5TCY1 1321 aaPredicted RBP29.46■■■□□ 2.31
CPSF4-209ENST00000465132 ABCC2Q92887 1545 aa29.4■■■□□ 2.3
CPSF4-209ENST00000465132 RAPGEF2Q9Y4G8 1499 aa29.39■■■□□ 2.3
CPSF4-209ENST00000465132 DISP1Q96F81 1524 aa29.37■■■□□ 2.29
CPSF4-209ENST00000465132 UHRF1BP1LA0JNW5 1464 aa29.35■■■□□ 2.29
CPSF4-209ENST00000465132 UACAQ9BZF9 1416 aa29.32■■■□□ 2.28
CPSF4-209ENST00000465132 KDM6BO15054 1643 aa29.31■■■□□ 2.28
CPSF4-209ENST00000465132 UGGT2Q9NYU1 1516 aa29.31■■■□□ 2.28
CPSF4-209ENST00000465132 ASXL2Q76L83 1435 aa29.31■■■□□ 2.28
CPSF4-209ENST00000465132 PLB1Q6P1J6 1458 aa29.29■■■□□ 2.28
CPSF4-209ENST00000465132 TSPOAP1O95153 1857 aa29.29■■■□□ 2.28
CPSF4-209ENST00000465132 GLI2P10070 1586 aa29.23■■■□□ 2.27
CPSF4-209ENST00000465132 KIAA0556O60303 1618 aa29.22■■■□□ 2.27
CPSF4-209ENST00000465132 KDM5BQ9UGL1 1544 aa29.2■■■□□ 2.27
CPSF4-209ENST00000465132 CHIC1Q5VXU3 224 aa29.14■■■□□ 2.26
CPSF4-209ENST00000465132 PPRC1Q5VV67 1664 aaKnown RBP29.14■■■□□ 2.26
CPSF4-209ENST00000465132 EPRSP07814 1512 aaKnown RBP29.13■■■□□ 2.25
CPSF4-209ENST00000465132 KDM4FA0A1W2PPD8 638 aa29.11■■■□□ 2.25
CPSF4-209ENST00000465132 ZCCHC11Q5TAX3 1644 aaKnown RBP29.11■■■□□ 2.25
CPSF4-209ENST00000465132 CTTNBP2Q8WZ74 1663 aa29.09■■■□□ 2.25
CPSF4-209ENST00000465132 PRXQ9BXM0 1461 aa29.08■■■□□ 2.25
CPSF4-209ENST00000465132 GOLGA3Q08378 1498 aa29.06■■■□□ 2.24
CPSF4-209ENST00000465132 MAP3K4Q9Y6R4 1608 aa29.05■■■□□ 2.24
CPSF4-209ENST00000465132 COL17A1Q9UMD9 1497 aaPredicted RBP29■■■□□ 2.23
CPSF4-209ENST00000465132 WDR7Q9Y4E6 1490 aa29■■■□□ 2.23
CPSF4-209ENST00000465132 TEX14Q8IWB6 1497 aa28.99■■■□□ 2.23
CPSF4-209ENST00000465132 ABCA8O94911 1581 aa28.96■■■□□ 2.23
CPSF4-209ENST00000465132 KCNH8Q96L42 1107 aa28.86■■■□□ 2.21
CPSF4-209ENST00000465132 EEA1Q15075 1411 aa28.86■■■□□ 2.21
CPSF4-209ENST00000465132 CSRNP3Q8WYN3 585 aa28.84■■■□□ 2.21
CPSF4-209ENST00000465132 CD109Q6YHK3 1445 aa28.84■■■□□ 2.21
CPSF4-209ENST00000465132 ADGRL1O94910 1474 aa28.84■■■□□ 2.21
CPSF4-209ENST00000465132 MAGI3Q5TCQ9 1506 aa28.83■■■□□ 2.21
CPSF4-209ENST00000465132 P3H3Q8IVL6 736 aa28.81■■■□□ 2.2
CPSF4-209ENST00000465132 CFAP43Q8NDM7 1665 aa28.8■■■□□ 2.2
CPSF4-209ENST00000465132 FAM9AQ8IZU1 332 aaPredicted RBP28.8■■■□□ 2.2
CPSF4-209ENST00000465132 ATP10BO94823 1461 aa28.74■■■□□ 2.19
CPSF4-209ENST00000465132 ARID3CA6NKF2 412 aa28.74■■■□□ 2.19
CPSF4-209ENST00000465132 SAMD9Q5K651 1589 aa28.72■■■□□ 2.19
CPSF4-209ENST00000465132 RAPGEF6Q8TEU7 1601 aa28.61■■■□□ 2.17
CPSF4-209ENST00000465132 ARAP3Q8WWN8 1544 aa28.6■■■□□ 2.17
CPSF4-209ENST00000465132 ABCA9Q8IUA7 1624 aa28.58■■■□□ 2.17
CPSF4-209ENST00000465132 RANGAP1P46060 587 aaPredicted RBP28.57■■■□□ 2.16
CPSF4-209ENST00000465132 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.55■■■□□ 2.16
CPSF4-209ENST00000465132 HNRNPUL2Q1KMD3 747 aaKnown RBP28.55■■■□□ 2.16
CPSF4-209ENST00000465132 NUP153P49790 1475 aaKnown RBP28.54■■■□□ 2.16
CPSF4-209ENST00000465132 PHLDB1Q86UU1 1377 aa28.54■■■□□ 2.16
CPSF4-209ENST00000465132 FHOD3Q2V2M9 1422 aa28.53■■■□□ 2.16
CPSF4-209ENST00000465132 KIF21BO75037 1637 aa28.48■■■□□ 2.15
CPSF4-209ENST00000465132 NEO1Q92859 1461 aa28.47■■■□□ 2.15
CPSF4-209ENST00000465132 HECW2Q9P2P5 1572 aa28.45■■■□□ 2.15
CPSF4-209ENST00000465132 RAPGEF3O95398 923 aa28.44■■■□□ 2.14
CPSF4-209ENST00000465132 EFCAB5A4FU69 1503 aa28.43■■■□□ 2.14
CPSF4-209ENST00000465132 PLEKHD1A6NEE1 506 aa28.41■■■□□ 2.14
CPSF4-209ENST00000465132 FRMPD1Q5SYB0 1578 aa28.34■■■□□ 2.13
CPSF4-209ENST00000465132 ILDR1Q86SU0 546 aaPredicted RBP28.3■■■□□ 2.12
CPSF4-209ENST00000465132 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP28.29■■■□□ 2.12
CPSF4-209ENST00000465132 AKNAQ7Z591 1439 aa28.27■■■□□ 2.12
CPSF4-209ENST00000465132 ADAMTSL3P82987 1691 aa28.27■■■□□ 2.12
CPSF4-209ENST00000465132 FANCAO15360 1455 aa28.27■■■□□ 2.12
CPSF4-209ENST00000465132 DENND4BO75064 1496 aaPredicted RBP28.27■■■□□ 2.12
CPSF4-209ENST00000465132 UBTFP17480 764 aaKnown RBP28.26■■■□□ 2.11
CPSF4-209ENST00000465132 EHMT2Q96KQ7 1210 aa28.25■■■□□ 2.11
CPSF4-209ENST00000465132 PTPRMP28827 1452 aa28.25■■■□□ 2.11
CPSF4-209ENST00000465132 CDK13Q14004 1512 aaKnown RBP28.24■■■□□ 2.11
CPSF4-209ENST00000465132 TTC37Q6PGP7 1564 aa28.24■■■□□ 2.11
CPSF4-209ENST00000465132 ARID4BQ4LE39 1312 aaPredicted RBP28.22■■■□□ 2.11
CPSF4-209ENST00000465132 CFAP74Q9C0B2 1584 aa28.22■■■□□ 2.11
CPSF4-209ENST00000465132 ARHGEF40Q8TER5 1519 aa28.2■■■□□ 2.1
CPSF4-209ENST00000465132 BCORL1Q5H9F3 1711 aa28.2■■■□□ 2.1
CPSF4-209ENST00000465132 RICTORQ6R327 1708 aa28.2■■■□□ 2.1
CPSF4-209ENST00000465132 FMN1Q68DA7 1419 aa28.18■■■□□ 2.1
CPSF4-209ENST00000465132 ARHGAP35Q9NRY4 1499 aa28.17■■■□□ 2.1
CPSF4-209ENST00000465132 ATP1B4Q9UN42 357 aaPredicted RBP28.14■■■□□ 2.1
CPSF4-209ENST00000465132 MADDQ8WXG6 1647 aa28.14■■■□□ 2.09
CPSF4-209ENST00000465132 ZMYM4Q5VZL5 1548 aa28.13■■■□□ 2.09
CPSF4-209ENST00000465132 PLCH2O75038 1416 aa28.13■■■□□ 2.09
CPSF4-209ENST00000465132 HECW1Q76N89 1606 aa28.13■■■□□ 2.09
CPSF4-209ENST00000465132 MAGI2Q86UL8 1455 aa28.08■■■□□ 2.09
CPSF4-209ENST00000465132 ZFYVE16Q7Z3T8 1539 aa28.08■■■□□ 2.09
CPSF4-209ENST00000465132 CDK11AQ9UQ88 783 aaPredicted RBP28.08■■■□□ 2.09
CPSF4-209ENST00000465132 SCAPERQ9BY12 1400 aa28.08■■■□□ 2.09
CPSF4-209ENST00000465132 YEATS2Q9ULM3 1422 aa28.08■■■□□ 2.09
CPSF4-209ENST00000465132 POGZQ7Z3K3 1410 aa28.06■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms