RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 KIF27Q86VH2 1401 aa39.74■■■■□ 3.95
USP4-208ENST00000464168 AEBP2Q6ZN18 517 aaPredicted RBP39.69■■■■□ 3.94
USP4-208ENST00000464168 KIAA0586Q9BVV6 1533 aa39.67■■■■□ 3.94
USP4-208ENST00000464168 KIF13AQ9H1H9 1805 aa39.61■■■■□ 3.93
USP4-208ENST00000464168 NPM1P06748 294 aaKnown RBP eCLIP39.59■■■■□ 3.93
USP4-208ENST00000464168 CUL7Q14999 1698 aa39.58■■■■□ 3.93
USP4-208ENST00000464168 FAM69CQ0P6D2 419 aa39.53■■■■□ 3.92
USP4-208ENST00000464168 ABCC10Q5T3U5 1492 aa39.51■■■■□ 3.92
USP4-208ENST00000464168 ADCY10Q96PN6 1610 aa39.51■■■■□ 3.91
USP4-208ENST00000464168 CARMIL1Q5VZK9 1371 aa39.5■■■■□ 3.91
USP4-208ENST00000464168 MAPKBP1O60336 1514 aa39.48■■■■□ 3.91
USP4-208ENST00000464168 PTPRGP23470 1445 aa39.36■■■■□ 3.89
USP4-208ENST00000464168 DIP2BQ9P265 1576 aa39.35■■■■□ 3.89
USP4-208ENST00000464168 TTBK1Q5TCY1 1321 aaPredicted RBP39.27■■■■□ 3.88
USP4-208ENST00000464168 CARMIL2Q6F5E8 1435 aa39.27■■■■□ 3.88
USP4-208ENST00000464168 TNIKQ9UKE5 1360 aa39.26■■■■□ 3.88
USP4-208ENST00000464168 IQGAP2Q13576 1575 aa39.21■■■■□ 3.87
USP4-208ENST00000464168 ABCC2Q92887 1545 aa39.14■■■■□ 3.86
USP4-208ENST00000464168 DISP1Q96F81 1524 aa39.09■■■■□ 3.85
USP4-208ENST00000464168 RAPGEF2Q9Y4G8 1499 aa39.09■■■■□ 3.85
USP4-208ENST00000464168 UHRF1BP1LA0JNW5 1464 aa39.05■■■■□ 3.84
USP4-208ENST00000464168 TSPOAP1O95153 1857 aa39.04■■■■□ 3.84
USP4-208ENST00000464168 ASXL2Q76L83 1435 aa39.04■■■■□ 3.84
USP4-208ENST00000464168 UACAQ9BZF9 1416 aa39.04■■■■□ 3.84
USP4-208ENST00000464168 KDM6BO15054 1643 aa39.03■■■■□ 3.84
USP4-208ENST00000464168 PLB1Q6P1J6 1458 aa39■■■■□ 3.83
USP4-208ENST00000464168 UGGT2Q9NYU1 1516 aa38.99■■■■□ 3.83
USP4-208ENST00000464168 GLI2P10070 1586 aa38.91■■■■□ 3.82
USP4-208ENST00000464168 KDM5BQ9UGL1 1544 aa38.89■■■■□ 3.82
USP4-208ENST00000464168 KDM4FA0A1W2PPD8 638 aa38.86■■■■□ 3.81
USP4-208ENST00000464168 KIAA0556O60303 1618 aa38.85■■■■□ 3.81
USP4-208ENST00000464168 PPRC1Q5VV67 1664 aaKnown RBP38.8■■■■□ 3.8
USP4-208ENST00000464168 EPRSP07814 1512 aaKnown RBP38.79■■■■□ 3.8
USP4-208ENST00000464168 ZCCHC11Q5TAX3 1644 aaKnown RBP38.73■■■■□ 3.79
USP4-208ENST00000464168 PRXQ9BXM0 1461 aa38.67■■■■□ 3.78
USP4-208ENST00000464168 COL17A1Q9UMD9 1497 aaPredicted RBP38.66■■■■□ 3.78
USP4-208ENST00000464168 MAP3K4Q9Y6R4 1608 aa38.66■■■■□ 3.78
USP4-208ENST00000464168 CTTNBP2Q8WZ74 1663 aa38.65■■■■□ 3.78
USP4-208ENST00000464168 GOLGA3Q08378 1498 aa38.65■■■■□ 3.78
USP4-208ENST00000464168 WDR7Q9Y4E6 1490 aa38.6■■■■□ 3.77
USP4-208ENST00000464168 TEX14Q8IWB6 1497 aa38.59■■■■□ 3.77
USP4-208ENST00000464168 ABCA8O94911 1581 aa38.54■■■■□ 3.76
USP4-208ENST00000464168 KCNH8Q96L42 1107 aa38.47■■■■□ 3.75
USP4-208ENST00000464168 ADGRL1O94910 1474 aa38.42■■■■□ 3.74
USP4-208ENST00000464168 CD109Q6YHK3 1445 aa38.42■■■■□ 3.74
USP4-208ENST00000464168 P3H3Q8IVL6 736 aa38.38■■■■□ 3.73
USP4-208ENST00000464168 MAGI3Q5TCQ9 1506 aa38.38■■■■□ 3.73
USP4-208ENST00000464168 CSRNP3Q8WYN3 585 aa38.37■■■■□ 3.73
USP4-208ENST00000464168 CFAP43Q8NDM7 1665 aa38.31■■■■□ 3.72
USP4-208ENST00000464168 FAM9AQ8IZU1 332 aaPredicted RBP38.31■■■■□ 3.72
USP4-208ENST00000464168 ARID3CA6NKF2 412 aa38.3■■■■□ 3.72
USP4-208ENST00000464168 ATP10BO94823 1461 aa38.28■■■■□ 3.72
USP4-208ENST00000464168 SAMD9Q5K651 1589 aa38.17■■■■□ 3.7
USP4-208ENST00000464168 EEA1Q15075 1411 aa38.1■■■■□ 3.69
USP4-208ENST00000464168 ARAP3Q8WWN8 1544 aa38.09■■■■□ 3.69
USP4-208ENST00000464168 RAPGEF6Q8TEU7 1601 aa38.05■■■■□ 3.68
USP4-208ENST00000464168 RANGAP1P46060 587 aaPredicted RBP38.04■■■■□ 3.68
USP4-208ENST00000464168 ABCA9Q8IUA7 1624 aa38.03■■■■□ 3.68
USP4-208ENST00000464168 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP38.01■■■■□ 3.68
USP4-208ENST00000464168 HNRNPUL2Q1KMD3 747 aaKnown RBP38.01■■■■□ 3.68
USP4-208ENST00000464168 PHLDB1Q86UU1 1377 aa38.01■■■■□ 3.68
USP4-208ENST00000464168 NUP153P49790 1475 aaKnown RBP37.98■■■■□ 3.67
USP4-208ENST00000464168 FHOD3Q2V2M9 1422 aa37.96■■■■□ 3.67
USP4-208ENST00000464168 HECW2Q9P2P5 1572 aa37.93■■■■□ 3.66
USP4-208ENST00000464168 RAPGEF3O95398 923 aa37.92■■■■□ 3.66
USP4-208ENST00000464168 KIF21BO75037 1637 aa37.91■■■■□ 3.66
USP4-208ENST00000464168 NEO1Q92859 1461 aa37.89■■■■□ 3.66
USP4-208ENST00000464168 PLEKHD1A6NEE1 506 aa37.83■■■■□ 3.65
USP4-208ENST00000464168 ILDR1Q86SU0 546 aaPredicted RBP37.83■■■■□ 3.65
USP4-208ENST00000464168 EFCAB5A4FU69 1503 aa37.76■■■■□ 3.63
USP4-208ENST00000464168 FRMPD1Q5SYB0 1578 aa37.72■■■■□ 3.63
USP4-208ENST00000464168 ADAMTSL3P82987 1691 aa37.66■■■■□ 3.62
USP4-208ENST00000464168 AKNAQ7Z591 1439 aa37.65■■■■□ 3.62
USP4-208ENST00000464168 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP37.65■■■■□ 3.62
USP4-208ENST00000464168 PTPRMP28827 1452 aa37.64■■■■□ 3.62
USP4-208ENST00000464168 DENND4BO75064 1496 aaPredicted RBP37.63■■■■□ 3.61
USP4-208ENST00000464168 FANCAO15360 1455 aa37.62■■■■□ 3.61
USP4-208ENST00000464168 ARID4BQ4LE39 1312 aaPredicted RBP37.61■■■■□ 3.61
USP4-208ENST00000464168 EHMT2Q96KQ7 1210 aa37.61■■■■□ 3.61
USP4-208ENST00000464168 UBTFP17480 764 aaKnown RBP37.6■■■■□ 3.61
USP4-208ENST00000464168 CDK13Q14004 1512 aaKnown RBP37.57■■■■□ 3.61
USP4-208ENST00000464168 TTC37Q6PGP7 1564 aa37.56■■■■□ 3.6
USP4-208ENST00000464168 BCORL1Q5H9F3 1711 aa37.54■■■■□ 3.6
USP4-208ENST00000464168 RICTORQ6R327 1708 aa37.53■■■■□ 3.6
USP4-208ENST00000464168 ARHGEF40Q8TER5 1519 aa37.51■■■■□ 3.6
USP4-208ENST00000464168 CFAP74Q9C0B2 1584 aa37.51■■■■□ 3.6
USP4-208ENST00000464168 CHIC1Q5VXU3 224 aa37.51■■■■□ 3.6
USP4-208ENST00000464168 ATP1B4Q9UN42 357 aaPredicted RBP37.47■■■■□ 3.59
USP4-208ENST00000464168 MADDQ8WXG6 1647 aa37.47■■■■□ 3.59
USP4-208ENST00000464168 FMN1Q68DA7 1419 aa37.46■■■■□ 3.59
USP4-208ENST00000464168 ARHGAP35Q9NRY4 1499 aa37.45■■■■□ 3.59
USP4-208ENST00000464168 PLCH2O75038 1416 aa37.44■■■■□ 3.58
USP4-208ENST00000464168 ZMYM4Q5VZL5 1548 aa37.42■■■■□ 3.58
USP4-208ENST00000464168 YEATS2Q9ULM3 1422 aa37.4■■■■□ 3.58
USP4-208ENST00000464168 SCAPERQ9BY12 1400 aa37.38■■■■□ 3.57
USP4-208ENST00000464168 MAGI2Q86UL8 1455 aa37.37■■■■□ 3.57
USP4-208ENST00000464168 ZFYVE16Q7Z3T8 1539 aa37.36■■■■□ 3.57
USP4-208ENST00000464168 HECW1Q76N89 1606 aa37.36■■■■□ 3.57
USP4-208ENST00000464168 CDK11AQ9UQ88 783 aaPredicted RBP37.36■■■■□ 3.57
USP4-208ENST00000464168 POGZQ7Z3K3 1410 aa37.34■■■■□ 3.57
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms