RNA–Protein interactions for RNA: ENST00000463446.1

EPHA4-210, Transcript of EPH receptor A4, humanhuman

TSL 2

Gene EPHA4, Length 579 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EPHA4-210ENST00000463446 LOC105371045A0A1W2PR82 267 aa11.79□□□□□ -0.52
EPHA4-210ENST00000463446 GRIN2AQ12879 1464 aa11.76□□□□□ -0.53
EPHA4-210ENST00000463446 KIAA0586Q9BVV6 1533 aa11.75□□□□□ -0.53
EPHA4-210ENST00000463446 JPH4Q96JJ6 628 aa11.74□□□□□ -0.53
EPHA4-210ENST00000463446 ADAMTS12P58397 1594 aa11.74□□□□□ -0.53
EPHA4-210ENST00000463446 EHMT2Q96KQ7 1210 aa11.73□□□□□ -0.53
EPHA4-210ENST00000463446 CARMIL2Q6F5E8 1435 aa11.71□□□□□ -0.53
EPHA4-210ENST00000463446 NUP160Q12769 1436 aa11.7□□□□□ -0.54
EPHA4-210ENST00000463446 APLP2Q06481 763 aa11.66□□□□□ -0.54
EPHA4-210ENST00000463446 IQGAP2Q13576 1575 aa11.64□□□□□ -0.55
EPHA4-210ENST00000463446 CLIP1P30622 1438 aa11.64□□□□□ -0.55
EPHA4-210ENST00000463446 RANGAP1P46060 587 aaPredicted RBP11.63□□□□□ -0.55
EPHA4-210ENST00000463446 CEP162Q5TB80 1403 aa11.62□□□□□ -0.55
EPHA4-210ENST00000463446 EFCAB5A4FU69 1503 aa11.62□□□□□ -0.55
EPHA4-210ENST00000463446 POTEDQ86YR6 584 aa11.62□□□□□ -0.55
EPHA4-210ENST00000463446 MSH5O43196 834 aa11.61□□□□□ -0.55
EPHA4-210ENST00000463446 CTTNBP2Q8WZ74 1663 aa11.61□□□□□ -0.55
EPHA4-210ENST00000463446 FMN1Q68DA7 1419 aa11.6□□□□□ -0.55
EPHA4-210ENST00000463446 UGGT2Q9NYU1 1516 aa11.6□□□□□ -0.55
EPHA4-210ENST00000463446 CHD1O14646 1710 aa11.6□□□□□ -0.55
EPHA4-210ENST00000463446 PRG4Q92954 1404 aaPredicted RBP11.59□□□□□ -0.55
EPHA4-210ENST00000463446 CEP170Q5SW79 1584 aa11.58□□□□□ -0.55
EPHA4-210ENST00000463446 CDK11AQ9UQ88 783 aaPredicted RBP11.57□□□□□ -0.56
EPHA4-210ENST00000463446 PTPRGP23470 1445 aa11.56□□□□□ -0.56
EPHA4-210ENST00000463446 P3H3Q8IVL6 736 aa11.56□□□□□ -0.56
EPHA4-210ENST00000463446 NPM1P06748 294 aaKnown RBP eCLIP11.55□□□□□ -0.56
EPHA4-210ENST00000463446 CLASP1Q7Z460 1538 aa11.55□□□□□ -0.56
EPHA4-210ENST00000463446 ARHGAP35Q9NRY4 1499 aa11.52□□□□□ -0.56
EPHA4-210ENST00000463446 ATP1B4Q9UN42 357 aaPredicted RBP11.52□□□□□ -0.57
EPHA4-210ENST00000463446 SHROOM2Q13796 1616 aa11.5□□□□□ -0.57
EPHA4-210ENST00000463446 VPS8Q8N3P4 1428 aa11.5□□□□□ -0.57
EPHA4-210ENST00000463446 DISP1Q96F81 1524 aa11.5□□□□□ -0.57
EPHA4-210ENST00000463446 SAMD9Q5K651 1589 aa11.5□□□□□ -0.57
EPHA4-210ENST00000463446 KIAA0556O60303 1618 aa11.47□□□□□ -0.57
EPHA4-210ENST00000463446 CASKIN1Q8WXD9 1431 aa11.47□□□□□ -0.57
EPHA4-210ENST00000463446 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.47□□□□□ -0.57
EPHA4-210ENST00000463446 HNRNPUL2Q1KMD3 747 aaKnown RBP11.47□□□□□ -0.57
EPHA4-210ENST00000463446 UACAQ9BZF9 1416 aa11.46□□□□□ -0.57
EPHA4-210ENST00000463446 TTBK1Q5TCY1 1321 aaPredicted RBP11.46□□□□□ -0.57
EPHA4-210ENST00000463446 PLEKHD1A6NEE1 506 aa11.46□□□□□ -0.57
EPHA4-210ENST00000463446 FHOD3Q2V2M9 1422 aa11.45□□□□□ -0.58
EPHA4-210ENST00000463446 ARAP1Q96P48 1450 aa11.44□□□□□ -0.58
EPHA4-210ENST00000463446 CYB5RLQ6IPT4 315 aa11.43□□□□□ -0.58
EPHA4-210ENST00000463446 CCDC18Q5T9S5 1454 aa11.43□□□□□ -0.58
EPHA4-210ENST00000463446 FYCO1Q9BQS8 1478 aa11.43□□□□□ -0.58
EPHA4-210ENST00000463446 MAP3K1Q13233 1512 aa11.42□□□□□ -0.58
EPHA4-210ENST00000463446 PLPPR3Q6T4P5 718 aa11.42□□□□□ -0.58
EPHA4-210ENST00000463446 UHRF1BP1LA0JNW5 1464 aa11.42□□□□□ -0.58
EPHA4-210ENST00000463446 ARHGEF11O15085 1522 aa11.4□□□□□ -0.59
EPHA4-210ENST00000463446 PIAS4Q8N2W9 510 aaPredicted RBP11.39□□□□□ -0.59
EPHA4-210ENST00000463446 HECW1Q76N89 1606 aa11.37□□□□□ -0.59
EPHA4-210ENST00000463446 RAPGEF6Q8TEU7 1601 aa11.36□□□□□ -0.59
EPHA4-210ENST00000463446 MTUS2Q5JR59 1369 aa11.36□□□□□ -0.59
EPHA4-210ENST00000463446 PLB1Q6P1J6 1458 aa11.35□□□□□ -0.59
EPHA4-210ENST00000463446 ABCC2Q92887 1545 aa11.35□□□□□ -0.59
EPHA4-210ENST00000463446 ABCA8O94911 1581 aa11.34□□□□□ -0.59
EPHA4-210ENST00000463446 EPRSP07814 1512 aaKnown RBP11.34□□□□□ -0.59
EPHA4-210ENST00000463446 ATP10BO94823 1461 aa11.32□□□□□ -0.6
EPHA4-210ENST00000463446 KDM5BQ9UGL1 1544 aa11.32□□□□□ -0.6
EPHA4-210ENST00000463446 NUP153P49790 1475 aaKnown RBP11.32□□□□□ -0.6
EPHA4-210ENST00000463446 RIMBP3CA6NJZ7 1639 aa11.31□□□□□ -0.6
EPHA4-210ENST00000463446 RIMBP3BA6NNM3 1639 aa11.31□□□□□ -0.6
EPHA4-210ENST00000463446 RIMBP3Q9UFD9 1639 aa11.31□□□□□ -0.6
EPHA4-210ENST00000463446 ERCC6L2Q5T890 1561 aa11.3□□□□□ -0.6
EPHA4-210ENST00000463446 LRRC9Q6ZRR7 1453 aa11.28□□□□□ -0.6
EPHA4-210ENST00000463446 RSPH4AQ5TD94 716 aa11.28□□□□□ -0.6
EPHA4-210ENST00000463446 KCNH8Q96L42 1107 aa11.28□□□□□ -0.6
EPHA4-210ENST00000463446 PCF11O94913 1555 aaKnown RBP11.28□□□□□ -0.6
EPHA4-210ENST00000463446 TIAM1Q13009 1591 aa11.28□□□□□ -0.6
EPHA4-210ENST00000463446 TROQ12816 1431 aaPredicted RBP11.27□□□□□ -0.6
EPHA4-210ENST00000463446 KANK4Q5T7N3 995 aaPredicted RBP11.27□□□□□ -0.61
EPHA4-210ENST00000463446 ARID3CA6NKF2 412 aa11.26□□□□□ -0.61
EPHA4-210ENST00000463446 TRIM26Q12899 539 aaPredicted RBP11.26□□□□□ -0.61
EPHA4-210ENST00000463446 PPP6R1Q9UPN7 881 aa11.25□□□□□ -0.61
EPHA4-210ENST00000463446 CCNB3Q8WWL7 1395 aa11.25□□□□□ -0.61
EPHA4-210ENST00000463446 EFCAB2Q5VUJ9 269 aa11.23□□□□□ -0.61
EPHA4-210ENST00000463446 CFDP1Q9UEE9 299 aaPredicted RBP11.23□□□□□ -0.61
EPHA4-210ENST00000463446 ACIN1Q9UKV3 1341 aaKnown RBP11.23□□□□□ -0.61
EPHA4-210ENST00000463446 ASXL2Q76L83 1435 aa11.23□□□□□ -0.61
EPHA4-210ENST00000463446 EHBP1L1Q8N3D4 1523 aa11.23□□□□□ -0.61
EPHA4-210ENST00000463446 PHLDB1Q86UU1 1377 aa11.22□□□□□ -0.61
EPHA4-210ENST00000463446 ADCY10Q96PN6 1610 aa11.22□□□□□ -0.61
EPHA4-210ENST00000463446 WDR7Q9Y4E6 1490 aa11.22□□□□□ -0.61
EPHA4-210ENST00000463446 MAPKBP1O60336 1514 aa11.2□□□□□ -0.62
EPHA4-210ENST00000463446 MIA2Q96PC5 1412 aa11.2□□□□□ -0.62
EPHA4-210ENST00000463446 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.2□□□□□ -0.62
EPHA4-210ENST00000463446 ADRA2BP18089 450 aa11.2□□□□□ -0.62
EPHA4-210ENST00000463446 SUPT6HQ7KZ85 1726 aaKnown RBP11.2□□□□□ -0.62
EPHA4-210ENST00000463446 ZCCHC11Q5TAX3 1644 aaKnown RBP11.2□□□□□ -0.62
EPHA4-210ENST00000463446 CDK13Q14004 1512 aaKnown RBP11.19□□□□□ -0.62
EPHA4-210ENST00000463446 FAM69CQ0P6D2 419 aa11.19□□□□□ -0.62
EPHA4-210ENST00000463446 PPARGC1BQ86YN6 1023 aaKnown RBP11.19□□□□□ -0.62
EPHA4-210ENST00000463446 CFAP43Q8NDM7 1665 aa11.19□□□□□ -0.62
EPHA4-210ENST00000463446 KIF14Q15058 1648 aa11.17□□□□□ -0.62
EPHA4-210ENST00000463446 TSPY4P0CV99 314 aa11.17□□□□□ -0.62
EPHA4-210ENST00000463446 TSPY10P0CW01 314 aa11.17□□□□□ -0.62
EPHA4-210ENST00000463446 NCOA2Q15596 1464 aa11.17□□□□□ -0.62
EPHA4-210ENST00000463446 MYOM3Q5VTT5 1437 aa11.17□□□□□ -0.62
EPHA4-210ENST00000463446 PLCH2O75038 1416 aa11.16□□□□□ -0.62
EPHA4-210ENST00000463446 CD109Q6YHK3 1445 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms