RNA–Protein interactions for RNA: ENST00000463370.5

VAPB-203, Transcript of VAMP associated protein B and C, humanhuman

TSL 2

Gene VAPB, Length 2,393 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-203ENST00000463370 ZNF608Q9ULD9 1512 aaPredicted RBP19.62■□□□□ 0.73
VAPB-203ENST00000463370 FHOD3Q2V2M9 1422 aa19.58■□□□□ 0.73
VAPB-203ENST00000463370 IFT140Q96RY7 1462 aa19.58■□□□□ 0.73
VAPB-203ENST00000463370 CTTNBP2Q8WZ74 1663 aa19.55■□□□□ 0.72
VAPB-203ENST00000463370 THOC2Q8NI27 1593 aaKnown RBP19.55■□□□□ 0.72
VAPB-203ENST00000463370 PBRM1Q86U86 1689 aa19.55■□□□□ 0.72
VAPB-203ENST00000463370 ZEB1P37275 1124 aaPredicted RBP19.54■□□□□ 0.72
VAPB-203ENST00000463370 GRIN2BQ13224 1484 aa19.53■□□□□ 0.72
VAPB-203ENST00000463370 HNRNPUL2Q1KMD3 747 aaKnown RBP19.53■□□□□ 0.72
VAPB-203ENST00000463370 FHAD1B1AJZ9 1412 aa19.53■□□□□ 0.72
VAPB-203ENST00000463370 CCER1Q8TC90 406 aaPredicted RBP19.51■□□□□ 0.71
VAPB-203ENST00000463370 EFCAB5A4FU69 1503 aa19.51■□□□□ 0.71
VAPB-203ENST00000463370 ADAMTS12P58397 1594 aa19.5■□□□□ 0.71
VAPB-203ENST00000463370 PCF11O94913 1555 aaKnown RBP19.49■□□□□ 0.71
VAPB-203ENST00000463370 TIAM1Q13009 1591 aa19.47■□□□□ 0.71
VAPB-203ENST00000463370 ATP1B4Q9UN42 357 aaPredicted RBP19.46■□□□□ 0.71
VAPB-203ENST00000463370 EIF4G3O43432 1585 aaKnown RBP19.45■□□□□ 0.7
VAPB-203ENST00000463370 SAMD9Q5K651 1589 aa19.43■□□□□ 0.7
VAPB-203ENST00000463370 SNAPC4Q5SXM2 1469 aa19.43■□□□□ 0.7
VAPB-203ENST00000463370 MAP3K1Q13233 1512 aa19.43■□□□□ 0.7
VAPB-203ENST00000463370 CASKIN1Q8WXD9 1431 aa19.41■□□□□ 0.7
VAPB-203ENST00000463370 LRRC9Q6ZRR7 1453 aa19.41■□□□□ 0.7
VAPB-203ENST00000463370 FYCO1Q9BQS8 1478 aa19.39■□□□□ 0.69
VAPB-203ENST00000463370 RRBP1Q9P2E9 1410 aaKnown RBP19.39■□□□□ 0.69
VAPB-203ENST00000463370 FMN1Q68DA7 1419 aa19.38■□□□□ 0.69
VAPB-203ENST00000463370 IQGAP2Q13576 1575 aa19.35■□□□□ 0.69
VAPB-203ENST00000463370 CFAP43Q8NDM7 1665 aa19.35■□□□□ 0.69
VAPB-203ENST00000463370 CCNB3Q8WWL7 1395 aa19.33■□□□□ 0.69
VAPB-203ENST00000463370 PHLDB1Q86UU1 1377 aa19.33■□□□□ 0.68
VAPB-203ENST00000463370 GRIN2AQ12879 1464 aa19.32■□□□□ 0.68
VAPB-203ENST00000463370 MAGI1Q96QZ7 1491 aaPredicted RBP19.29■□□□□ 0.68
VAPB-203ENST00000463370 CHMP7Q8WUX9 453 aaPredicted RBP19.27■□□□□ 0.68
VAPB-203ENST00000463370 KIAA0586Q9BVV6 1533 aa19.27■□□□□ 0.68
VAPB-203ENST00000463370 FBLN2P98095 1184 aa19.27■□□□□ 0.67
VAPB-203ENST00000463370 SYNJ2O15056 1496 aa19.26■□□□□ 0.67
VAPB-203ENST00000463370 ITGAEP38570 1179 aa19.26■□□□□ 0.67
VAPB-203ENST00000463370 UGGT2Q9NYU1 1516 aa19.26■□□□□ 0.67
VAPB-203ENST00000463370 LRRIQ1Q96JM4 1722 aa19.24■□□□□ 0.67
VAPB-203ENST00000463370 DISP1Q96F81 1524 aa19.22■□□□□ 0.67
VAPB-203ENST00000463370 CEP170Q5SW79 1584 aa19.22■□□□□ 0.67
VAPB-203ENST00000463370 MTUS2Q5JR59 1369 aa19.19■□□□□ 0.66
VAPB-203ENST00000463370 FAM50AQ14320 339 aaKnown RBP19.17■□□□□ 0.66
VAPB-203ENST00000463370 ARID3CA6NKF2 412 aa19.17■□□□□ 0.66
VAPB-203ENST00000463370 KIAA0556O60303 1618 aa19.17■□□□□ 0.66
VAPB-203ENST00000463370 MAGI3Q5TCQ9 1506 aa19.15■□□□□ 0.66
VAPB-203ENST00000463370 NUP160Q12769 1436 aa19.15■□□□□ 0.66
VAPB-203ENST00000463370 EPRSP07814 1512 aaKnown RBP19.12■□□□□ 0.65
VAPB-203ENST00000463370 CDK13Q14004 1512 aaKnown RBP19.12■□□□□ 0.65
VAPB-203ENST00000463370 DHX57Q6P158 1386 aaKnown RBP19.12■□□□□ 0.65
VAPB-203ENST00000463370 HECW1Q76N89 1606 aa19.11■□□□□ 0.65
VAPB-203ENST00000463370 NCOA2Q15596 1464 aa19.11■□□□□ 0.65
VAPB-203ENST00000463370 CCDC18Q5T9S5 1454 aa19.1■□□□□ 0.65
VAPB-203ENST00000463370 FGD6Q6ZV73 1430 aa19.09■□□□□ 0.65
VAPB-203ENST00000463370 JPH4Q96JJ6 628 aa19.09■□□□□ 0.65
VAPB-203ENST00000463370 EHBP1L1Q8N3D4 1523 aa19.08■□□□□ 0.65
VAPB-203ENST00000463370 RAB3GAP2Q9H2M9 1393 aa19.06■□□□□ 0.64
VAPB-203ENST00000463370 NUP153P49790 1475 aaKnown RBP19.05■□□□□ 0.64
VAPB-203ENST00000463370 MYOM3Q5VTT5 1437 aa19.04■□□□□ 0.64
VAPB-203ENST00000463370 ARHGEF11O15085 1522 aa19.04■□□□□ 0.64
VAPB-203ENST00000463370 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.03■□□□□ 0.64
VAPB-203ENST00000463370 SUPT6HQ7KZ85 1726 aaKnown RBP19.02■□□□□ 0.64
VAPB-203ENST00000463370 PLB1Q6P1J6 1458 aa19.02■□□□□ 0.63
VAPB-203ENST00000463370 SETD5Q9C0A6 1442 aa19.01■□□□□ 0.63
VAPB-203ENST00000463370 RAPGEF6Q8TEU7 1601 aa19■□□□□ 0.63
VAPB-203ENST00000463370 PTPRKQ15262 1439 aa18.99■□□□□ 0.63
VAPB-203ENST00000463370 CARMIL2Q6F5E8 1435 aa18.99■□□□□ 0.63
VAPB-203ENST00000463370 CLSPNQ9HAW4 1339 aa18.95■□□□□ 0.62
VAPB-203ENST00000463370 CHD1O14646 1710 aa18.93■□□□□ 0.62
VAPB-203ENST00000463370 PRG4Q92954 1404 aaPredicted RBP18.93■□□□□ 0.62
VAPB-203ENST00000463370 PTPN23Q9H3S7 1636 aa18.92■□□□□ 0.62
VAPB-203ENST00000463370 MAPKBP1O60336 1514 aa18.89■□□□□ 0.61
VAPB-203ENST00000463370 TCOF1Q13428 1488 aaKnown RBP18.88■□□□□ 0.61
VAPB-203ENST00000463370 ABCA8O94911 1581 aa18.86■□□□□ 0.61
VAPB-203ENST00000463370 CDK11AQ9UQ88 783 aaPredicted RBP18.86■□□□□ 0.61
VAPB-203ENST00000463370 HFM1A2PYH4 1435 aa18.85■□□□□ 0.61
VAPB-203ENST00000463370 TROQ12816 1431 aaPredicted RBP18.85■□□□□ 0.61
VAPB-203ENST00000463370 MIA2Q96PC5 1412 aa18.85■□□□□ 0.61
VAPB-203ENST00000463370 CHIC2Q9UKJ5 165 aa18.84■□□□□ 0.61
VAPB-203ENST00000463370 ZNF644Q9H582 1327 aaPredicted RBP18.83■□□□□ 0.6
VAPB-203ENST00000463370 PTPRGP23470 1445 aa18.83■□□□□ 0.6
VAPB-203ENST00000463370 NAIPQ13075 1403 aa18.83■□□□□ 0.6
VAPB-203ENST00000463370 ATP10BO94823 1461 aa18.82■□□□□ 0.6
VAPB-203ENST00000463370 ZNF316A6NFI3 1004 aaPredicted RBP18.82■□□□□ 0.6
VAPB-203ENST00000463370 ERCC6L2Q5T890 1561 aa18.8■□□□□ 0.6
VAPB-203ENST00000463370 RRP7BPQ9NSQ0 103 aa18.79■□□□□ 0.6
VAPB-203ENST00000463370 KIF14Q15058 1648 aa18.79■□□□□ 0.6
VAPB-203ENST00000463370 SHROOM2Q13796 1616 aa18.79■□□□□ 0.6
VAPB-203ENST00000463370 SIN3AQ96ST3 1273 aa18.77■□□□□ 0.6
VAPB-203ENST00000463370 DIEXFQ68CQ4 756 aaKnown RBP18.76■□□□□ 0.59
VAPB-203ENST00000463370 GPATCH8Q9UKJ3 1502 aaKnown RBP18.75■□□□□ 0.59
VAPB-203ENST00000463370 PLEKHD1A6NEE1 506 aa18.74■□□□□ 0.59
VAPB-203ENST00000463370 CLASP1Q7Z460 1538 aa18.73■□□□□ 0.59
VAPB-203ENST00000463370 CFDP1Q9UEE9 299 aaPredicted RBP18.73■□□□□ 0.59
VAPB-203ENST00000463370 ABCC5O15440 1437 aa18.72■□□□□ 0.59
VAPB-203ENST00000463370 DAPK1P53355 1430 aa18.72■□□□□ 0.59
VAPB-203ENST00000463370 ADCY10Q96PN6 1610 aa18.72■□□□□ 0.59
VAPB-203ENST00000463370 NEUROD1Q13562 356 aa18.71■□□□□ 0.59
VAPB-203ENST00000463370 UACAQ9BZF9 1416 aa18.71■□□□□ 0.59
VAPB-203ENST00000463370 KDM6BO15054 1643 aa18.7■□□□□ 0.58
VAPB-203ENST00000463370 ZNF777Q9ULD5 760 aaPredicted RBP18.69■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms