RNA–Protein interactions for RNA: ENST00000463315.1

SEMA3D-203, Transcript of semaphorin 3D, humanhuman

TSL 2

Gene SEMA3D, Length 1,257 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3D-203ENST00000463315 CEP170Q5SW79 1584 aa23.08■■□□□ 1.29
SEMA3D-203ENST00000463315 RUSC2Q8N2Y8 1516 aa23.06■■□□□ 1.28
SEMA3D-203ENST00000463315 RIMBP3CA6NJZ7 1639 aa23.05■■□□□ 1.28
SEMA3D-203ENST00000463315 RIMBP3BA6NNM3 1639 aa23.05■■□□□ 1.28
SEMA3D-203ENST00000463315 RIMBP3Q9UFD9 1639 aa23.05■■□□□ 1.28
SEMA3D-203ENST00000463315 EEA1Q15075 1411 aa23.03■■□□□ 1.28
SEMA3D-203ENST00000463315 MSH5O43196 834 aa23.01■■□□□ 1.27
SEMA3D-203ENST00000463315 RAPGEF2Q9Y4G8 1499 aa22.99■■□□□ 1.27
SEMA3D-203ENST00000463315 KIAA0586Q9BVV6 1533 aa22.98■■□□□ 1.27
SEMA3D-203ENST00000463315 SHROOM2Q13796 1616 aa22.97■■□□□ 1.27
SEMA3D-203ENST00000463315 PRXQ9BXM0 1461 aa22.94■■□□□ 1.26
SEMA3D-203ENST00000463315 CSRNP3Q8WYN3 585 aa22.93■■□□□ 1.26
SEMA3D-203ENST00000463315 JPH4Q96JJ6 628 aa22.93■■□□□ 1.26
SEMA3D-203ENST00000463315 ARAP1Q96P48 1450 aa22.89■■□□□ 1.25
SEMA3D-203ENST00000463315 CYB5RLQ6IPT4 315 aa22.85■■□□□ 1.25
SEMA3D-203ENST00000463315 PRG4Q92954 1404 aaPredicted RBP22.84■■□□□ 1.25
SEMA3D-203ENST00000463315 IQGAP2Q13576 1575 aa22.81■■□□□ 1.24
SEMA3D-203ENST00000463315 ERCC6L2Q5T890 1561 aa22.78■■□□□ 1.24
SEMA3D-203ENST00000463315 CARMIL2Q6F5E8 1435 aa22.74■■□□□ 1.23
SEMA3D-203ENST00000463315 UGGT2Q9NYU1 1516 aa22.72■■□□□ 1.23
SEMA3D-203ENST00000463315 CTTNBP2Q8WZ74 1663 aa22.71■■□□□ 1.23
SEMA3D-203ENST00000463315 KIF21BO75037 1637 aa22.71■■□□□ 1.23
SEMA3D-203ENST00000463315 FAM9AQ8IZU1 332 aaPredicted RBP22.7■■□□□ 1.22
SEMA3D-203ENST00000463315 DISP1Q96F81 1524 aa22.64■■□□□ 1.21
SEMA3D-203ENST00000463315 TNIKQ9UKE5 1360 aa22.63■■□□□ 1.21
SEMA3D-203ENST00000463315 GOLGA3Q08378 1498 aa22.63■■□□□ 1.21
SEMA3D-203ENST00000463315 PTPRGP23470 1445 aa22.6■■□□□ 1.21
SEMA3D-203ENST00000463315 KIAA0556O60303 1618 aa22.57■■□□□ 1.2
SEMA3D-203ENST00000463315 UHRF1BP1LA0JNW5 1464 aa22.48■■□□□ 1.19
SEMA3D-203ENST00000463315 UBTFP17480 764 aaKnown RBP22.47■■□□□ 1.19
SEMA3D-203ENST00000463315 UACAQ9BZF9 1416 aa22.47■■□□□ 1.19
SEMA3D-203ENST00000463315 SAMD9Q5K651 1589 aa22.46■■□□□ 1.19
SEMA3D-203ENST00000463315 ADCY10Q96PN6 1610 aa22.46■■□□□ 1.19
SEMA3D-203ENST00000463315 NPM1P06748 294 aaKnown RBP eCLIP22.46■■□□□ 1.19
SEMA3D-203ENST00000463315 EFCAB5A4FU69 1503 aa22.42■■□□□ 1.18
SEMA3D-203ENST00000463315 ABCC2Q92887 1545 aa22.41■■□□□ 1.18
SEMA3D-203ENST00000463315 MAPKBP1O60336 1514 aa22.39■■□□□ 1.17
SEMA3D-203ENST00000463315 TTBK1Q5TCY1 1321 aaPredicted RBP22.38■■□□□ 1.17
SEMA3D-203ENST00000463315 KDM5BQ9UGL1 1544 aa22.35■■□□□ 1.17
SEMA3D-203ENST00000463315 ABCA8O94911 1581 aa22.34■■□□□ 1.17
SEMA3D-203ENST00000463315 TRHP20396 242 aaPredicted RBP22.34■■□□□ 1.17
SEMA3D-203ENST00000463315 P3H3Q8IVL6 736 aa22.33■■□□□ 1.17
SEMA3D-203ENST00000463315 PLB1Q6P1J6 1458 aa22.33■■□□□ 1.16
SEMA3D-203ENST00000463315 EHMT2Q96KQ7 1210 aa22.31■■□□□ 1.16
SEMA3D-203ENST00000463315 RANGAP1P46060 587 aaPredicted RBP22.28■■□□□ 1.16
SEMA3D-203ENST00000463315 FHOD3Q2V2M9 1422 aa22.27■■□□□ 1.16
SEMA3D-203ENST00000463315 ABCC10Q5T3U5 1492 aa22.26■■□□□ 1.15
SEMA3D-203ENST00000463315 ARHGAP35Q9NRY4 1499 aa22.26■■□□□ 1.15
SEMA3D-203ENST00000463315 FMN1Q68DA7 1419 aa22.23■■□□□ 1.15
SEMA3D-203ENST00000463315 ASXL2Q76L83 1435 aa22.23■■□□□ 1.15
SEMA3D-203ENST00000463315 ZCCHC11Q5TAX3 1644 aaKnown RBP22.22■■□□□ 1.15
SEMA3D-203ENST00000463315 RAPGEF6Q8TEU7 1601 aa22.22■■□□□ 1.15
SEMA3D-203ENST00000463315 DIP2BQ9P265 1576 aa22.18■■□□□ 1.14
SEMA3D-203ENST00000463315 ATP10BO94823 1461 aa22.17■■□□□ 1.14
SEMA3D-203ENST00000463315 KIF13AQ9H1H9 1805 aa22.16■■□□□ 1.14
SEMA3D-203ENST00000463315 FAM69CQ0P6D2 419 aa22.16■■□□□ 1.14
SEMA3D-203ENST00000463315 CLIP1P30622 1438 aa22.15■■□□□ 1.14
SEMA3D-203ENST00000463315 NUP153P49790 1475 aaKnown RBP22.15■■□□□ 1.14
SEMA3D-203ENST00000463315 GLI2P10070 1586 aa22.14■■□□□ 1.13
SEMA3D-203ENST00000463315 WDR7Q9Y4E6 1490 aa22.14■■□□□ 1.13
SEMA3D-203ENST00000463315 EPRSP07814 1512 aaKnown RBP22.11■■□□□ 1.13
SEMA3D-203ENST00000463315 HECW1Q76N89 1606 aa22.06■■□□□ 1.12
SEMA3D-203ENST00000463315 CEP162Q5TB80 1403 aa22.06■■□□□ 1.12
SEMA3D-203ENST00000463315 LOC105371045A0A1W2PR82 267 aa22.05■■□□□ 1.12
SEMA3D-203ENST00000463315 CASKIN1Q8WXD9 1431 aa22.04■■□□□ 1.12
SEMA3D-203ENST00000463315 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.02■■□□□ 1.12
SEMA3D-203ENST00000463315 HNRNPUL2Q1KMD3 747 aaKnown RBP22.02■■□□□ 1.12
SEMA3D-203ENST00000463315 PLEKHD1A6NEE1 506 aa22.01■■□□□ 1.11
SEMA3D-203ENST00000463315 ARID3CA6NKF2 412 aa22■■□□□ 1.11
SEMA3D-203ENST00000463315 MAP3K4Q9Y6R4 1608 aa21.99■■□□□ 1.11
SEMA3D-203ENST00000463315 FYCO1Q9BQS8 1478 aa21.98■■□□□ 1.11
SEMA3D-203ENST00000463315 CDK11AQ9UQ88 783 aaPredicted RBP21.98■■□□□ 1.11
SEMA3D-203ENST00000463315 KCNH8Q96L42 1107 aa21.97■■□□□ 1.11
SEMA3D-203ENST00000463315 CCDC18Q5T9S5 1454 aa21.96■■□□□ 1.11
SEMA3D-203ENST00000463315 CFAP43Q8NDM7 1665 aa21.95■■□□□ 1.1
SEMA3D-203ENST00000463315 ATP1B4Q9UN42 357 aaPredicted RBP21.94■■□□□ 1.1
SEMA3D-203ENST00000463315 TEX14Q8IWB6 1497 aa21.94■■□□□ 1.1
SEMA3D-203ENST00000463315 CDK13Q14004 1512 aaKnown RBP21.94■■□□□ 1.1
SEMA3D-203ENST00000463315 PCF11O94913 1555 aaKnown RBP21.94■■□□□ 1.1
SEMA3D-203ENST00000463315 MAGI3Q5TCQ9 1506 aa21.93■■□□□ 1.1
SEMA3D-203ENST00000463315 CD109Q6YHK3 1445 aa21.93■■□□□ 1.1
SEMA3D-203ENST00000463315 ABCA9Q8IUA7 1624 aa21.91■■□□□ 1.1
SEMA3D-203ENST00000463315 POTEDQ86YR6 584 aa21.91■■□□□ 1.1
SEMA3D-203ENST00000463315 PPRC1Q5VV67 1664 aaKnown RBP21.89■■□□□ 1.1
SEMA3D-203ENST00000463315 TSPOAP1O95153 1857 aa21.88■■□□□ 1.09
SEMA3D-203ENST00000463315 TROQ12816 1431 aaPredicted RBP21.86■■□□□ 1.09
SEMA3D-203ENST00000463315 LRRIQ1Q96JM4 1722 aa21.85■■□□□ 1.09
SEMA3D-203ENST00000463315 PHLDB1Q86UU1 1377 aa21.85■■□□□ 1.09
SEMA3D-203ENST00000463315 VPS8Q8N3P4 1428 aa21.82■■□□□ 1.08
SEMA3D-203ENST00000463315 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.81■■□□□ 1.08
SEMA3D-203ENST00000463315 KDM6BO15054 1643 aa21.8■■□□□ 1.08
SEMA3D-203ENST00000463315 NEO1Q92859 1461 aa21.77■■□□□ 1.08
SEMA3D-203ENST00000463315 KIF14Q15058 1648 aa21.77■■□□□ 1.08
SEMA3D-203ENST00000463315 ARAP3Q8WWN8 1544 aa21.75■■□□□ 1.07
SEMA3D-203ENST00000463315 TTC37Q6PGP7 1564 aa21.74■■□□□ 1.07
SEMA3D-203ENST00000463315 PLCH2O75038 1416 aa21.74■■□□□ 1.07
SEMA3D-203ENST00000463315 MAP3K1Q13233 1512 aa21.71■■□□□ 1.07
SEMA3D-203ENST00000463315 COL17A1Q9UMD9 1497 aaPredicted RBP21.71■■□□□ 1.07
SEMA3D-203ENST00000463315 CFAP74Q9C0B2 1584 aa21.7■■□□□ 1.06
SEMA3D-203ENST00000463315 MTUS2Q5JR59 1369 aa21.69■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms