RNA–Protein interactions for RNA: ENST00000462482.1

SKA3-204, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 750 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-204ENST00000462482 NPM1P06748 294 aaKnown RBP eCLIP26.76■■□□□ 1.87
SKA3-204ENST00000462482 RUSC2Q8N2Y8 1516 aa26.72■■□□□ 1.87
SKA3-204ENST00000462482 AEBP2Q6ZN18 517 aaPredicted RBP26.7■■□□□ 1.86
SKA3-204ENST00000462482 KIAA0586Q9BVV6 1533 aa26.69■■□□□ 1.86
SKA3-204ENST00000462482 CUL7Q14999 1698 aa26.64■■□□□ 1.86
SKA3-204ENST00000462482 CARMIL1Q5VZK9 1371 aa26.62■■□□□ 1.85
SKA3-204ENST00000462482 FAM69CQ0P6D2 419 aa26.58■■□□□ 1.85
SKA3-204ENST00000462482 PTPRGP23470 1445 aa26.51■■□□□ 1.83
SKA3-204ENST00000462482 CARMIL2Q6F5E8 1435 aa26.51■■□□□ 1.83
SKA3-204ENST00000462482 ABCC10Q5T3U5 1492 aa26.5■■□□□ 1.83
SKA3-204ENST00000462482 TTBK1Q5TCY1 1321 aaPredicted RBP26.5■■□□□ 1.83
SKA3-204ENST00000462482 MAPKBP1O60336 1514 aa26.49■■□□□ 1.83
SKA3-204ENST00000462482 ADCY10Q96PN6 1610 aa26.45■■□□□ 1.82
SKA3-204ENST00000462482 TNIKQ9UKE5 1360 aa26.45■■□□□ 1.82
SKA3-204ENST00000462482 KIF13AQ9H1H9 1805 aa26.4■■□□□ 1.82
SKA3-204ENST00000462482 IQGAP2Q13576 1575 aa26.38■■□□□ 1.81
SKA3-204ENST00000462482 DIP2BQ9P265 1576 aa26.36■■□□□ 1.81
SKA3-204ENST00000462482 RAPGEF2Q9Y4G8 1499 aa26.36■■□□□ 1.81
SKA3-204ENST00000462482 ABCC2Q92887 1545 aa26.31■■□□□ 1.8
SKA3-204ENST00000462482 UACAQ9BZF9 1416 aa26.27■■□□□ 1.8
SKA3-204ENST00000462482 PLB1Q6P1J6 1458 aa26.25■■□□□ 1.79
SKA3-204ENST00000462482 UHRF1BP1LA0JNW5 1464 aa26.24■■□□□ 1.79
SKA3-204ENST00000462482 DISP1Q96F81 1524 aa26.24■■□□□ 1.79
SKA3-204ENST00000462482 ASXL2Q76L83 1435 aa26.22■■□□□ 1.79
SKA3-204ENST00000462482 UGGT2Q9NYU1 1516 aa26.21■■□□□ 1.79
SKA3-204ENST00000462482 KDM6BO15054 1643 aa26.19■■□□□ 1.78
SKA3-204ENST00000462482 KIAA0556O60303 1618 aa26.11■■□□□ 1.77
SKA3-204ENST00000462482 KDM5BQ9UGL1 1544 aa26.11■■□□□ 1.77
SKA3-204ENST00000462482 FAM9AQ8IZU1 332 aaPredicted RBP26.11■■□□□ 1.77
SKA3-204ENST00000462482 GOLGA3Q08378 1498 aa26.11■■□□□ 1.77
SKA3-204ENST00000462482 GLI2P10070 1586 aa26.1■■□□□ 1.77
SKA3-204ENST00000462482 TSPOAP1O95153 1857 aa26.08■■□□□ 1.77
SKA3-204ENST00000462482 EPRSP07814 1512 aaKnown RBP26.04■■□□□ 1.76
SKA3-204ENST00000462482 PRXQ9BXM0 1461 aa26.03■■□□□ 1.76
SKA3-204ENST00000462482 TEX14Q8IWB6 1497 aa26■■□□□ 1.75
SKA3-204ENST00000462482 ZCCHC11Q5TAX3 1644 aaKnown RBP25.98■■□□□ 1.75
SKA3-204ENST00000462482 KDM4FA0A1W2PPD8 638 aa25.97■■□□□ 1.75
SKA3-204ENST00000462482 WDR7Q9Y4E6 1490 aa25.97■■□□□ 1.75
SKA3-204ENST00000462482 CTTNBP2Q8WZ74 1663 aa25.96■■□□□ 1.75
SKA3-204ENST00000462482 CSRNP3Q8WYN3 585 aa25.93■■□□□ 1.74
SKA3-204ENST00000462482 KCNH8Q96L42 1107 aa25.92■■□□□ 1.74
SKA3-204ENST00000462482 PPRC1Q5VV67 1664 aaKnown RBP25.89■■□□□ 1.73
SKA3-204ENST00000462482 MAP3K4Q9Y6R4 1608 aa25.88■■□□□ 1.73
SKA3-204ENST00000462482 P3H3Q8IVL6 736 aa25.88■■□□□ 1.73
SKA3-204ENST00000462482 ABCA8O94911 1581 aa25.87■■□□□ 1.73
SKA3-204ENST00000462482 CD109Q6YHK3 1445 aa25.85■■□□□ 1.73
SKA3-204ENST00000462482 COL17A1Q9UMD9 1497 aaPredicted RBP25.84■■□□□ 1.73
SKA3-204ENST00000462482 EEA1Q15075 1411 aa25.8■■□□□ 1.72
SKA3-204ENST00000462482 ARID3CA6NKF2 412 aa25.8■■□□□ 1.72
SKA3-204ENST00000462482 MAGI3Q5TCQ9 1506 aa25.78■■□□□ 1.72
SKA3-204ENST00000462482 ADGRL1O94910 1474 aa25.76■■□□□ 1.71
SKA3-204ENST00000462482 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.74■■□□□ 1.71
SKA3-204ENST00000462482 HNRNPUL2Q1KMD3 747 aaKnown RBP25.74■■□□□ 1.71
SKA3-204ENST00000462482 RANGAP1P46060 587 aaPredicted RBP25.73■■□□□ 1.71
SKA3-204ENST00000462482 CFAP43Q8NDM7 1665 aa25.71■■□□□ 1.71
SKA3-204ENST00000462482 ATP10BO94823 1461 aa25.71■■□□□ 1.71
SKA3-204ENST00000462482 SAMD9Q5K651 1589 aa25.65■■□□□ 1.7
SKA3-204ENST00000462482 PHLDB1Q86UU1 1377 aa25.62■■□□□ 1.69
SKA3-204ENST00000462482 RAPGEF6Q8TEU7 1601 aa25.59■■□□□ 1.69
SKA3-204ENST00000462482 FHOD3Q2V2M9 1422 aa25.58■■□□□ 1.69
SKA3-204ENST00000462482 ARAP3Q8WWN8 1544 aa25.58■■□□□ 1.68
SKA3-204ENST00000462482 PLEKHD1A6NEE1 506 aa25.56■■□□□ 1.68
SKA3-204ENST00000462482 NUP153P49790 1475 aaKnown RBP25.53■■□□□ 1.68
SKA3-204ENST00000462482 ABCA9Q8IUA7 1624 aa25.52■■□□□ 1.68
SKA3-204ENST00000462482 NEO1Q92859 1461 aa25.5■■□□□ 1.67
SKA3-204ENST00000462482 UBTFP17480 764 aaKnown RBP25.49■■□□□ 1.67
SKA3-204ENST00000462482 EFCAB5A4FU69 1503 aa25.48■■□□□ 1.67
SKA3-204ENST00000462482 RAPGEF3O95398 923 aa25.48■■□□□ 1.67
SKA3-204ENST00000462482 KIF21BO75037 1637 aa25.47■■□□□ 1.67
SKA3-204ENST00000462482 EHMT2Q96KQ7 1210 aa25.44■■□□□ 1.66
SKA3-204ENST00000462482 ARID4BQ4LE39 1312 aaPredicted RBP25.39■■□□□ 1.66
SKA3-204ENST00000462482 ATP1B4Q9UN42 357 aaPredicted RBP25.39■■□□□ 1.66
SKA3-204ENST00000462482 CHIC1Q5VXU3 224 aa25.37■■□□□ 1.65
SKA3-204ENST00000462482 HECW2Q9P2P5 1572 aa25.36■■□□□ 1.65
SKA3-204ENST00000462482 DENND4BO75064 1496 aaPredicted RBP25.34■■□□□ 1.65
SKA3-204ENST00000462482 FMN1Q68DA7 1419 aa25.34■■□□□ 1.65
SKA3-204ENST00000462482 AKNAQ7Z591 1439 aa25.33■■□□□ 1.65
SKA3-204ENST00000462482 CDK11AQ9UQ88 783 aaPredicted RBP25.33■■□□□ 1.65
SKA3-204ENST00000462482 FANCAO15360 1455 aa25.33■■□□□ 1.65
SKA3-204ENST00000462482 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP25.28■■□□□ 1.643e-6■■□□□ 13.1
SKA3-204ENST00000462482 CFAP74Q9C0B2 1584 aa25.27■■□□□ 1.64
SKA3-204ENST00000462482 CDK13Q14004 1512 aaKnown RBP25.27■■□□□ 1.64
SKA3-204ENST00000462482 ILDR1Q86SU0 546 aaPredicted RBP25.26■■□□□ 1.63
SKA3-204ENST00000462482 FRMPD1Q5SYB0 1578 aa25.24■■□□□ 1.63
SKA3-204ENST00000462482 PTPRMP28827 1452 aa25.24■■□□□ 1.63
SKA3-204ENST00000462482 ARHGAP35Q9NRY4 1499 aa25.22■■□□□ 1.63
SKA3-204ENST00000462482 HECW1Q76N89 1606 aa25.21■■□□□ 1.63
SKA3-204ENST00000462482 TTC37Q6PGP7 1564 aa25.21■■□□□ 1.63
SKA3-204ENST00000462482 PLCH2O75038 1416 aa25.2■■□□□ 1.63
SKA3-204ENST00000462482 POGZQ7Z3K3 1410 aa25.2■■□□□ 1.63
SKA3-204ENST00000462482 EFCAB2Q5VUJ9 269 aa25.2■■□□□ 1.62
SKA3-204ENST00000462482 ARHGEF40Q8TER5 1519 aa25.19■■□□□ 1.62
SKA3-204ENST00000462482 ADAMTSL3P82987 1691 aa25.18■■□□□ 1.62
SKA3-204ENST00000462482 SCAPERQ9BY12 1400 aa25.18■■□□□ 1.62
SKA3-204ENST00000462482 MAGI2Q86UL8 1455 aa25.16■■□□□ 1.62
SKA3-204ENST00000462482 CLIP1P30622 1438 aa25.15■■□□□ 1.62
SKA3-204ENST00000462482 ZFYVE16Q7Z3T8 1539 aa25.14■■□□□ 1.62
SKA3-204ENST00000462482 BCORL1Q5H9F3 1711 aa25.14■■□□□ 1.61
SKA3-204ENST00000462482 ZMYM4Q5VZL5 1548 aa25.13■■□□□ 1.61
SKA3-204ENST00000462482 RICTORQ6R327 1708 aa25.12■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms