RNA–Protein interactions for RNA: ENST00000461990.1

LINC01140-201, Transcript of long intergenic non-protein coding RNA 1140, humanhuman

TSL 1 (best) BASIC

Gene LINC01140, Length 3,181 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01140-201ENST00000461990 TRIM52Q96A61 297 aa12.67□□□□□ -0.38
LINC01140-201ENST00000461990 ABCC8Q09428 1581 aa12.67□□□□□ -0.38
LINC01140-201ENST00000461990 VPS8Q8N3P4 1428 aa12.66□□□□□ -0.38
LINC01140-201ENST00000461990 ANP32AP39687 249 aaKnown RBP12.64□□□□□ -0.39
LINC01140-201ENST00000461990 ZBTB47Q9UFB7 747 aaPredicted RBP12.64□□□□□ -0.39
LINC01140-201ENST00000461990 CCDC88BA6NC98 1476 aa12.62□□□□□ -0.39
LINC01140-201ENST00000461990 NCAPD3P42695 1498 aa12.61□□□□□ -0.39
LINC01140-201ENST00000461990 CECR2Q9BXF3 1484 aa12.61□□□□□ -0.39
LINC01140-201ENST00000461990 CLIP1P30622 1438 aa12.61□□□□□ -0.39
LINC01140-201ENST00000461990 ZMYND15Q9H091 742 aa12.61□□□□□ -0.39
LINC01140-201ENST00000461990 KIF21BO75037 1637 aa12.61□□□□□ -0.39
LINC01140-201ENST00000461990 MAPKBP1O60336 1514 aa12.59□□□□□ -0.39
LINC01140-201ENST00000461990 CEP164Q9UPV0 1460 aa12.59□□□□□ -0.39
LINC01140-201ENST00000461990 ANP32CO43423 234 aa12.59□□□□□ -0.39
LINC01140-201ENST00000461990 DDX10Q13206 875 aaKnown RBP12.59□□□□□ -0.39
LINC01140-201ENST00000461990 FAM43AQ8N2R8 423 aa12.58□□□□□ -0.4
LINC01140-201ENST00000461990 BAZ1AQ9NRL2 1556 aaPredicted RBP12.58□□□□□ -0.4
LINC01140-201ENST00000461990 SMARCA2P51531 1590 aa12.58□□□□□ -0.4
LINC01140-201ENST00000461990 SOGA1O94964 1423 aa12.57□□□□□ -0.4
LINC01140-201ENST00000461990 WDR97A6NE52 1622 aa12.57□□□□□ -0.4
LINC01140-201ENST00000461990 BRPF3Q9ULD4 1205 aa12.56□□□□□ -0.4
LINC01140-201ENST00000461990 RRBP1Q9P2E9 1410 aaKnown RBP12.56□□□□□ -0.4
LINC01140-201ENST00000461990 IRX6P78412 446 aaPredicted RBP12.54□□□□□ -0.4
LINC01140-201ENST00000461990 PEG3Q9GZU2 1588 aa12.54□□□□□ -0.4
LINC01140-201ENST00000461990 PPM1GO15355 546 aaPredicted RBP12.54□□□□□ -0.4
LINC01140-201ENST00000461990 NEFMP07197 916 aa12.53□□□□□ -0.4
LINC01140-201ENST00000461990 BAZ1BQ9UIG0 1483 aaKnown RBP12.52□□□□□ -0.4
LINC01140-201ENST00000461990 GSE1Q14687 1217 aa12.52□□□□□ -0.41
LINC01140-201ENST00000461990 SMARCA4P51532 1647 aa12.52□□□□□ -0.41
LINC01140-201ENST00000461990 WIZO95785 1651 aa12.51□□□□□ -0.41
LINC01140-201ENST00000461990 TIMELESSQ9UNS1 1208 aa12.51□□□□□ -0.41
LINC01140-201ENST00000461990 B4GALNT3Q6L9W6 998 aa12.5□□□□□ -0.41
LINC01140-201ENST00000461990 VSIG10Q8N0Z9 540 aa12.5□□□□□ -0.41
LINC01140-201ENST00000461990 UBTFP17480 764 aaKnown RBP12.49□□□□□ -0.41
LINC01140-201ENST00000461990 MROH2BQ7Z745 1585 aa12.49□□□□□ -0.41
LINC01140-201ENST00000461990 PHF23Q9BUL5 403 aaPredicted RBP12.49□□□□□ -0.41
LINC01140-201ENST00000461990 HMGXB3Q12766 1538 aa12.48□□□□□ -0.41
LINC01140-201ENST00000461990 HNRNPUQ00839 825 aaKnown RBP eCLIP12.47□□□□□ -0.41
LINC01140-201ENST00000461990 RUSC2Q8N2Y8 1516 aa12.47□□□□□ -0.41
LINC01140-201ENST00000461990 RRP9O43818 475 aaKnown RBP12.45□□□□□ -0.42
LINC01140-201ENST00000461990 RNF123Q5XPI4 1314 aa12.41□□□□□ -0.42
LINC01140-201ENST00000461990 ATAD2BQ9ULI0 1458 aa12.4□□□□□ -0.42
LINC01140-201ENST00000461990 ZBED9Q6R2W3 1325 aa12.4□□□□□ -0.42
LINC01140-201ENST00000461990 FRAT1Q92837 279 aaPredicted RBP12.38□□□□□ -0.43
LINC01140-201ENST00000461990 LAS1LQ9Y4W2 734 aaKnown RBP12.38□□□□□ -0.43
LINC01140-201ENST00000461990 RAB3GAP2Q9H2M9 1393 aa12.37□□□□□ -0.43
LINC01140-201ENST00000461990 SYNJ1O43426 1573 aa12.37□□□□□ -0.43
LINC01140-201ENST00000461990 HSP90AA2PQ14568 343 aaPredicted RBP12.36□□□□□ -0.43
LINC01140-201ENST00000461990 SMG6Q86US8 1419 aaKnown RBP12.35□□□□□ -0.43
LINC01140-201ENST00000461990 CCNB3Q8WWL7 1395 aa12.35□□□□□ -0.43
LINC01140-201ENST00000461990 TOP2AP11388 1531 aaKnown RBP12.35□□□□□ -0.43
LINC01140-201ENST00000461990 FGD1P98174 961 aa12.34□□□□□ -0.43
LINC01140-201ENST00000461990 AAMPQ13685 434 aa12.34□□□□□ -0.43
LINC01140-201ENST00000461990 NCBP3Q53F19 620 aaKnown RBP12.33□□□□□ -0.44
LINC01140-201ENST00000461990 NFKBIBQ15653 356 aa12.33□□□□□ -0.44
LINC01140-201ENST00000461990 TCERG1O14776 1098 aaKnown RBP12.32□□□□□ -0.44
LINC01140-201ENST00000461990 CENPJQ9HC77 1338 aaPredicted RBP12.32□□□□□ -0.44
LINC01140-201ENST00000461990 DDRGK1Q96HY6 314 aa12.32□□□□□ -0.44
LINC01140-201ENST00000461990 MS4A1P11836 297 aa12.31□□□□□ -0.44
LINC01140-201ENST00000461990 NCOA2Q15596 1464 aa12.31□□□□□ -0.44
LINC01140-201ENST00000461990 RBM10P98175 930 aaKnown RBP12.31□□□□□ -0.44
LINC01140-201ENST00000461990 DCAF11Q8TEB1 546 aa12.31□□□□□ -0.44
LINC01140-201ENST00000461990 SETD5Q9C0A6 1442 aa12.3□□□□□ -0.44
LINC01140-201ENST00000461990 BACH2Q9BYV9 841 aa12.29□□□□□ -0.44
LINC01140-201ENST00000461990 HSP90AA1P07900 732 aaKnown RBP12.29□□□□□ -0.44
LINC01140-201ENST00000461990 ARAP1Q96P48 1450 aa12.28□□□□□ -0.44
LINC01140-201ENST00000461990 RRAGDQ9NQL2 400 aaPredicted RBP12.28□□□□□ -0.44
LINC01140-201ENST00000461990 FHAD1B1AJZ9 1412 aa12.28□□□□□ -0.44
LINC01140-201ENST00000461990 PDE4AP27815 886 aa12.26□□□□□ -0.45
LINC01140-201ENST00000461990 CALD1Q05682 793 aaKnown RBP12.25□□□□□ -0.45
LINC01140-201ENST00000461990 PDE4CQ08493 712 aa12.24□□□□□ -0.45
LINC01140-201ENST00000461990 RAPGEF2Q9Y4G8 1499 aa12.24□□□□□ -0.45
LINC01140-201ENST00000461990 AKNAQ7Z591 1439 aa12.24□□□□□ -0.45
LINC01140-201ENST00000461990 CLCN1P35523 988 aa12.24□□□□□ -0.45
LINC01140-201ENST00000461990 SIN3AQ96ST3 1273 aa12.24□□□□□ -0.45
LINC01140-201ENST00000461990 PRDM4Q9UKN5 801 aa12.23□□□□□ -0.45
LINC01140-201ENST00000461990 KANK4Q5T7N3 995 aaPredicted RBP12.23□□□□□ -0.45
LINC01140-201ENST00000461990 CNTLNQ9NXG0 1405 aa12.22□□□□□ -0.45
LINC01140-201ENST00000461990 ERICH3Q5RHP9 1530 aa12.22□□□□□ -0.45
LINC01140-201ENST00000461990 NPM2Q86SE8 214 aaKnown RBP12.22□□□□□ -0.45
LINC01140-201ENST00000461990 LAMC3Q9Y6N6 1575 aa12.21□□□□□ -0.45
LINC01140-201ENST00000461990 NUDCQ9Y266 331 aa12.21□□□□□ -0.46
LINC01140-201ENST00000461990 HIRIP3Q9BW71 556 aaPredicted RBP12.2□□□□□ -0.46
LINC01140-201ENST00000461990 MAP3K1Q13233 1512 aa12.2□□□□□ -0.46
LINC01140-201ENST00000461990 ABCA5Q8WWZ7 1642 aa12.2□□□□□ -0.46
LINC01140-201ENST00000461990 KDM5BQ9UGL1 1544 aa12.19□□□□□ -0.46
LINC01140-201ENST00000461990 POLR1AO95602 1720 aaPredicted RBP12.19□□□□□ -0.46
LINC01140-201ENST00000461990 A0A0U1RQG5 324 aaPredicted RBP12.18□□□□□ -0.46
LINC01140-201ENST00000461990 L1TD1Q5T7N2 865 aaKnown RBP12.18□□□□□ -0.46
LINC01140-201ENST00000461990 PNNQ9H307 717 aaKnown RBP12.18□□□□□ -0.46
LINC01140-201ENST00000461990 NAP1L5Q96NT1 182 aaPredicted RBP12.18□□□□□ -0.46
LINC01140-201ENST00000461990 PDCL3Q9H2J4 239 aa12.18□□□□□ -0.46
LINC01140-201ENST00000461990 CCDC184Q52MB2 194 aa12.16□□□□□ -0.46
LINC01140-201ENST00000461990 PDIA4P13667 645 aaKnown RBP12.14□□□□□ -0.47
LINC01140-201ENST00000461990 PRKRIP1Q9H875 184 aaPredicted RBP12.14□□□□□ -0.47
LINC01140-201ENST00000461990 TPM2P07951 284 aa12.12□□□□□ -0.47
LINC01140-201ENST00000461990 FRAT2O75474 233 aaPredicted RBP12.12□□□□□ -0.47
LINC01140-201ENST00000461990 PLPPR3Q6T4P5 718 aa12.12□□□□□ -0.47
LINC01140-201ENST00000461990 TONSLQ96HA7 1378 aa12.12□□□□□ -0.47
LINC01140-201ENST00000461990 PRDM2Q13029 1718 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms