RNA–Protein interactions for RNA: ENST00000461897.5

COL4A6-204, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best)

Gene COL4A6, Length 1,889 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-204ENST00000461897 ARHGAP35Q9NRY4 1499 aa19.2■□□□□ 0.66
COL4A6-204ENST00000461897 GRIN2BQ13224 1484 aa19.19■□□□□ 0.66
COL4A6-204ENST00000461897 ADAMTS12P58397 1594 aa19.19■□□□□ 0.66
COL4A6-204ENST00000461897 FHAD1B1AJZ9 1412 aa19.15■□□□□ 0.66
COL4A6-204ENST00000461897 SNAPC4Q5SXM2 1469 aa19.09■□□□□ 0.65
COL4A6-204ENST00000461897 EFCAB5A4FU69 1503 aa19.06■□□□□ 0.64
COL4A6-204ENST00000461897 MAGI1Q96QZ7 1491 aaPredicted RBP19.03■□□□□ 0.64
COL4A6-204ENST00000461897 SAMD9Q5K651 1589 aa19.01■□□□□ 0.63
COL4A6-204ENST00000461897 TTBK1Q5TCY1 1321 aaPredicted RBP19■□□□□ 0.63
COL4A6-204ENST00000461897 GRIN2AQ12879 1464 aa18.99■□□□□ 0.63
COL4A6-204ENST00000461897 FHOD3Q2V2M9 1422 aa18.98■□□□□ 0.63
COL4A6-204ENST00000461897 IQGAP2Q13576 1575 aa18.97■□□□□ 0.63
COL4A6-204ENST00000461897 SYNJ2O15056 1496 aa18.96■□□□□ 0.63
COL4A6-204ENST00000461897 APLP2Q06481 763 aa18.94■□□□□ 0.62
COL4A6-204ENST00000461897 P3H3Q8IVL6 736 aa18.94■□□□□ 0.62
COL4A6-204ENST00000461897 PCF11O94913 1555 aaKnown RBP18.94■□□□□ 0.62
COL4A6-204ENST00000461897 CEP170Q5SW79 1584 aa18.89■□□□□ 0.61
COL4A6-204ENST00000461897 KIAA0586Q9BVV6 1533 aa18.89■□□□□ 0.61
COL4A6-204ENST00000461897 TIAM1Q13009 1591 aa18.88■□□□□ 0.61
COL4A6-204ENST00000461897 UGGT2Q9NYU1 1516 aa18.88■□□□□ 0.61
COL4A6-204ENST00000461897 MAP3K1Q13233 1512 aa18.87■□□□□ 0.61
COL4A6-204ENST00000461897 FYCO1Q9BQS8 1478 aa18.87■□□□□ 0.61
COL4A6-204ENST00000461897 KANK4Q5T7N3 995 aaPredicted RBP18.86■□□□□ 0.61
COL4A6-204ENST00000461897 FMN1Q68DA7 1419 aa18.86■□□□□ 0.61
COL4A6-204ENST00000461897 CHMP7Q8WUX9 453 aaPredicted RBP18.86■□□□□ 0.61
COL4A6-204ENST00000461897 CFAP43Q8NDM7 1665 aa18.85■□□□□ 0.61
COL4A6-204ENST00000461897 CASKIN1Q8WXD9 1431 aa18.85■□□□□ 0.61
COL4A6-204ENST00000461897 NUP160Q12769 1436 aa18.84■□□□□ 0.61
COL4A6-204ENST00000461897 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.84■□□□□ 0.61
COL4A6-204ENST00000461897 CCER1Q8TC90 406 aaPredicted RBP18.83■□□□□ 0.6
COL4A6-204ENST00000461897 FBLN2P98095 1184 aa18.81■□□□□ 0.6
COL4A6-204ENST00000461897 KIAA0556O60303 1618 aa18.8■□□□□ 0.6
COL4A6-204ENST00000461897 DISP1Q96F81 1524 aa18.8■□□□□ 0.6
COL4A6-204ENST00000461897 CHD1O14646 1710 aa18.77■□□□□ 0.6
COL4A6-204ENST00000461897 LRRIQ1Q96JM4 1722 aa18.77■□□□□ 0.6
COL4A6-204ENST00000461897 LRRC9Q6ZRR7 1453 aa18.77■□□□□ 0.6
COL4A6-204ENST00000461897 ATP1B4Q9UN42 357 aaPredicted RBP18.72■□□□□ 0.59
COL4A6-204ENST00000461897 HECW1Q76N89 1606 aa18.69■□□□□ 0.58
COL4A6-204ENST00000461897 RRBP1Q9P2E9 1410 aaKnown RBP18.68■□□□□ 0.58
COL4A6-204ENST00000461897 SCAF1Q9H7N4 1312 aaKnown RBP18.66■□□□□ 0.58
COL4A6-204ENST00000461897 JPH4Q96JJ6 628 aa18.65■□□□□ 0.58
COL4A6-204ENST00000461897 CCDC18Q5T9S5 1454 aa18.64■□□□□ 0.57
COL4A6-204ENST00000461897 CARMIL2Q6F5E8 1435 aa18.62■□□□□ 0.57
COL4A6-204ENST00000461897 PHLDB1Q86UU1 1377 aa18.62■□□□□ 0.57
COL4A6-204ENST00000461897 EPRSP07814 1512 aaKnown RBP18.62■□□□□ 0.57
COL4A6-204ENST00000461897 RAPGEF6Q8TEU7 1601 aa18.61■□□□□ 0.57
COL4A6-204ENST00000461897 MAGI3Q5TCQ9 1506 aa18.6■□□□□ 0.57
COL4A6-204ENST00000461897 CCNB3Q8WWL7 1395 aa18.59■□□□□ 0.57
COL4A6-204ENST00000461897 EHBP1L1Q8N3D4 1523 aa18.59■□□□□ 0.57
COL4A6-204ENST00000461897 SHROOM2Q13796 1616 aa18.59■□□□□ 0.57
COL4A6-204ENST00000461897 CDK13Q14004 1512 aaKnown RBP18.59■□□□□ 0.57
COL4A6-204ENST00000461897 PELP1Q8IZL8 1130 aaKnown RBP18.58■□□□□ 0.57
COL4A6-204ENST00000461897 NUP153P49790 1475 aaKnown RBP18.58■□□□□ 0.56
COL4A6-204ENST00000461897 MTUS2Q5JR59 1369 aa18.58■□□□□ 0.56
COL4A6-204ENST00000461897 HNRNPUL2Q1KMD3 747 aaKnown RBP18.57■□□□□ 0.56
COL4A6-204ENST00000461897 DIEXFQ68CQ4 756 aaKnown RBP18.56■□□□□ 0.56
COL4A6-204ENST00000461897 PLB1Q6P1J6 1458 aa18.55■□□□□ 0.56
COL4A6-204ENST00000461897 PRG4Q92954 1404 aaPredicted RBP18.55■□□□□ 0.56
COL4A6-204ENST00000461897 CLASP1Q7Z460 1538 aa18.55■□□□□ 0.56
COL4A6-204ENST00000461897 SUPT6HQ7KZ85 1726 aaKnown RBP18.54■□□□□ 0.56
COL4A6-204ENST00000461897 ACIN1Q9UKV3 1341 aaKnown RBP18.52■□□□□ 0.56
COL4A6-204ENST00000461897 NCOA2Q15596 1464 aa18.52■□□□□ 0.56
COL4A6-204ENST00000461897 ARHGEF11O15085 1522 aa18.51■□□□□ 0.55
COL4A6-204ENST00000461897 ABCA8O94911 1581 aa18.5■□□□□ 0.55
COL4A6-204ENST00000461897 ARID3CA6NKF2 412 aa18.49■□□□□ 0.55
COL4A6-204ENST00000461897 ERCC6L2Q5T890 1561 aa18.47■□□□□ 0.55
COL4A6-204ENST00000461897 ZNF316A6NFI3 1004 aaPredicted RBP18.47■□□□□ 0.55
COL4A6-204ENST00000461897 FGD6Q6ZV73 1430 aa18.47■□□□□ 0.55
COL4A6-204ENST00000461897 MYOM3Q5VTT5 1437 aa18.45■□□□□ 0.54
COL4A6-204ENST00000461897 PTPRGP23470 1445 aa18.43■□□□□ 0.54
COL4A6-204ENST00000461897 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.42■□□□□ 0.54
COL4A6-204ENST00000461897 NEUROD1Q13562 356 aa18.42■□□□□ 0.54
COL4A6-204ENST00000461897 CENPBP07199 599 aaPredicted RBP18.41■□□□□ 0.54
COL4A6-204ENST00000461897 FAM50AQ14320 339 aaKnown RBP18.4■□□□□ 0.54
COL4A6-204ENST00000461897 ITGAEP38570 1179 aa18.39■□□□□ 0.53
COL4A6-204ENST00000461897 TROQ12816 1431 aaPredicted RBP18.37■□□□□ 0.53
COL4A6-204ENST00000461897 PTPN23Q9H3S7 1636 aa18.37■□□□□ 0.53
COL4A6-204ENST00000461897 ATP10BO94823 1461 aa18.37■□□□□ 0.53
COL4A6-204ENST00000461897 CLSPNQ9HAW4 1339 aa18.36■□□□□ 0.53
COL4A6-204ENST00000461897 CDK11AQ9UQ88 783 aaPredicted RBP18.36■□□□□ 0.53
COL4A6-204ENST00000461897 ADCY10Q96PN6 1610 aa18.36■□□□□ 0.53
COL4A6-204ENST00000461897 UACAQ9BZF9 1416 aa18.34■□□□□ 0.53
COL4A6-204ENST00000461897 TCOF1Q13428 1488 aaKnown RBP18.34■□□□□ 0.53
COL4A6-204ENST00000461897 KIF14Q15058 1648 aa18.34■□□□□ 0.53
COL4A6-204ENST00000461897 MIA2Q96PC5 1412 aa18.31■□□□□ 0.52
COL4A6-204ENST00000461897 ABCC2Q92887 1545 aa18.31■□□□□ 0.52
COL4A6-204ENST00000461897 PTPRKQ15262 1439 aa18.28■□□□□ 0.52
COL4A6-204ENST00000461897 RAB3GAP2Q9H2M9 1393 aa18.27■□□□□ 0.51
COL4A6-204ENST00000461897 ITSN2Q9NZM3 1697 aa18.26■□□□□ 0.51
COL4A6-204ENST00000461897 SETD5Q9C0A6 1442 aa18.26■□□□□ 0.51
COL4A6-204ENST00000461897 DHX57Q6P158 1386 aaKnown RBP18.25■□□□□ 0.51
COL4A6-204ENST00000461897 UHRF1BP1LA0JNW5 1464 aa18.24■□□□□ 0.51
COL4A6-204ENST00000461897 PLEKHD1A6NEE1 506 aa18.24■□□□□ 0.51
COL4A6-204ENST00000461897 ABCC10Q5T3U5 1492 aa18.23■□□□□ 0.51
COL4A6-204ENST00000461897 GPATCH8Q9UKJ3 1502 aaKnown RBP18.23■□□□□ 0.51
COL4A6-204ENST00000461897 OSCARQ8IYS5 282 aa18.22■□□□□ 0.51
COL4A6-204ENST00000461897 CDC42BPAQ5VT25 1732 aa18.22■□□□□ 0.51
COL4A6-204ENST00000461897 GTF3C3Q9Y5Q9 886 aa18.22■□□□□ 0.51
COL4A6-204ENST00000461897 ZCCHC11Q5TAX3 1644 aaKnown RBP18.2■□□□□ 0.5
COL4A6-204ENST00000461897 HFM1A2PYH4 1435 aa18.19■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms