RNA–Protein interactions for RNA: ENST00000461874.1

VARS-220, Transcript of valyl-tRNA synthetase, humanhuman

TSL 5

Gene VARS, Length 845 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-220ENST00000461874 CUL7Q14999 1698 aa32.66■■■□□ 2.82
VARS-220ENST00000461874 RUSC2Q8N2Y8 1516 aa32.66■■■□□ 2.82
VARS-220ENST00000461874 CARMIL1Q5VZK9 1371 aa32.63■■■□□ 2.81
VARS-220ENST00000461874 KIAA0586Q9BVV6 1533 aa32.6■■■□□ 2.81
VARS-220ENST00000461874 RAPGEF2Q9Y4G8 1499 aa32.35■■■□□ 2.77
VARS-220ENST00000461874 NPM1P06748 294 aaKnown RBP eCLIP32.29■■■□□ 2.76
VARS-220ENST00000461874 IQGAP2Q13576 1575 aa32.28■■■□□ 2.76
VARS-220ENST00000461874 CARMIL2Q6F5E8 1435 aa32.26■■■□□ 2.76
VARS-220ENST00000461874 PTPRGP23470 1445 aa32.26■■■□□ 2.75
VARS-220ENST00000461874 ADCY10Q96PN6 1610 aa32.23■■■□□ 2.75
VARS-220ENST00000461874 TNIKQ9UKE5 1360 aa32.22■■■□□ 2.75
VARS-220ENST00000461874 TTBK1Q5TCY1 1321 aaPredicted RBP32.17■■■□□ 2.74
VARS-220ENST00000461874 MAPKBP1O60336 1514 aa32.16■■■□□ 2.74
VARS-220ENST00000461874 DISP1Q96F81 1524 aa32.14■■■□□ 2.74
VARS-220ENST00000461874 UGGT2Q9NYU1 1516 aa32.12■■■□□ 2.73
VARS-220ENST00000461874 ABCC10Q5T3U5 1492 aa32.11■■■□□ 2.73
VARS-220ENST00000461874 PRXQ9BXM0 1461 aa32.1■■■□□ 2.73
VARS-220ENST00000461874 FAM69CQ0P6D2 419 aa32.1■■■□□ 2.73
VARS-220ENST00000461874 KIF13AQ9H1H9 1805 aa32.1■■■□□ 2.73
VARS-220ENST00000461874 ABCC2Q92887 1545 aa32.01■■■□□ 2.72
VARS-220ENST00000461874 UACAQ9BZF9 1416 aa32■■■□□ 2.71
VARS-220ENST00000461874 UHRF1BP1LA0JNW5 1464 aa32■■■□□ 2.71
VARS-220ENST00000461874 DIP2BQ9P265 1576 aa31.98■■■□□ 2.71
VARS-220ENST00000461874 KIAA0556O60303 1618 aa31.98■■■□□ 2.71
VARS-220ENST00000461874 CSRNP3Q8WYN3 585 aa31.97■■■□□ 2.71
VARS-220ENST00000461874 CTTNBP2Q8WZ74 1663 aa31.94■■■□□ 2.7
VARS-220ENST00000461874 GOLGA3Q08378 1498 aa31.9■■■□□ 2.7
VARS-220ENST00000461874 ASXL2Q76L83 1435 aa31.88■■■□□ 2.69
VARS-220ENST00000461874 PLB1Q6P1J6 1458 aa31.86■■■□□ 2.69
VARS-220ENST00000461874 EEA1Q15075 1411 aa31.85■■■□□ 2.69
VARS-220ENST00000461874 KDM5BQ9UGL1 1544 aa31.85■■■□□ 2.69
VARS-220ENST00000461874 GLI2P10070 1586 aa31.73■■■□□ 2.67
VARS-220ENST00000461874 FAM9AQ8IZU1 332 aaPredicted RBP31.72■■■□□ 2.67
VARS-220ENST00000461874 ZCCHC11Q5TAX3 1644 aaKnown RBP31.71■■■□□ 2.67
VARS-220ENST00000461874 TSPOAP1O95153 1857 aa31.69■■■□□ 2.66
VARS-220ENST00000461874 ABCA8O94911 1581 aa31.69■■■□□ 2.66
VARS-220ENST00000461874 EPRSP07814 1512 aaKnown RBP31.69■■■□□ 2.66
VARS-220ENST00000461874 P3H3Q8IVL6 736 aa31.68■■■□□ 2.66
VARS-220ENST00000461874 CHIC1Q5VXU3 224 aa31.66■■■□□ 2.66
VARS-220ENST00000461874 KDM6BO15054 1643 aa31.61■■■□□ 2.65
VARS-220ENST00000461874 WDR7Q9Y4E6 1490 aa31.61■■■□□ 2.65
VARS-220ENST00000461874 AEBP2Q6ZN18 517 aaPredicted RBP31.61■■■□□ 2.65
VARS-220ENST00000461874 SAMD9Q5K651 1589 aa31.57■■■□□ 2.64
VARS-220ENST00000461874 PPRC1Q5VV67 1664 aaKnown RBP31.56■■■□□ 2.64
VARS-220ENST00000461874 KIF21BO75037 1637 aa31.53■■■□□ 2.64
VARS-220ENST00000461874 MAP3K4Q9Y6R4 1608 aa31.53■■■□□ 2.64
VARS-220ENST00000461874 RANGAP1P46060 587 aaPredicted RBP31.51■■■□□ 2.63
VARS-220ENST00000461874 KCNH8Q96L42 1107 aa31.5■■■□□ 2.63
VARS-220ENST00000461874 ARID3CA6NKF2 412 aa31.48■■■□□ 2.63
VARS-220ENST00000461874 ATP10BO94823 1461 aa31.47■■■□□ 2.63
VARS-220ENST00000461874 TEX14Q8IWB6 1497 aa31.46■■■□□ 2.63
VARS-220ENST00000461874 FHOD3Q2V2M9 1422 aa31.41■■■□□ 2.62
VARS-220ENST00000461874 CD109Q6YHK3 1445 aa31.41■■■□□ 2.62
VARS-220ENST00000461874 COL17A1Q9UMD9 1497 aaPredicted RBP31.4■■■□□ 2.62
VARS-220ENST00000461874 RAPGEF6Q8TEU7 1601 aa31.38■■■□□ 2.61
VARS-220ENST00000461874 MAGI3Q5TCQ9 1506 aa31.36■■■□□ 2.61
VARS-220ENST00000461874 UBTFP17480 764 aaKnown RBP31.36■■■□□ 2.61
VARS-220ENST00000461874 EHMT2Q96KQ7 1210 aa31.35■■■□□ 2.61
VARS-220ENST00000461874 EFCAB5A4FU69 1503 aa31.34■■■□□ 2.61
VARS-220ENST00000461874 CFAP43Q8NDM7 1665 aa31.33■■■□□ 2.61
VARS-220ENST00000461874 NUP153P49790 1475 aaKnown RBP31.32■■■□□ 2.6
VARS-220ENST00000461874 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP31.3■■■□□ 2.6
VARS-220ENST00000461874 HNRNPUL2Q1KMD3 747 aaKnown RBP31.3■■■□□ 2.6
VARS-220ENST00000461874 KDM4FA0A1W2PPD8 638 aa31.26■■■□□ 2.59
VARS-220ENST00000461874 ABCA9Q8IUA7 1624 aa31.18■■■□□ 2.58
VARS-220ENST00000461874 PLEKHD1A6NEE1 506 aa31.17■■■□□ 2.58
VARS-220ENST00000461874 ARHGAP35Q9NRY4 1499 aa31.14■■■□□ 2.57
VARS-220ENST00000461874 PHLDB1Q86UU1 1377 aa31.11■■■□□ 2.57
VARS-220ENST00000461874 ARAP3Q8WWN8 1544 aa31.1■■■□□ 2.57
VARS-220ENST00000461874 FMN1Q68DA7 1419 aa31.09■■■□□ 2.57
VARS-220ENST00000461874 ADGRL1O94910 1474 aa31.03■■■□□ 2.56
VARS-220ENST00000461874 NEO1Q92859 1461 aa31.03■■■□□ 2.56
VARS-220ENST00000461874 CDK13Q14004 1512 aaKnown RBP31.02■■■□□ 2.56
VARS-220ENST00000461874 ATP1B4Q9UN42 357 aaPredicted RBP31.01■■■□□ 2.55
VARS-220ENST00000461874 RAPGEF3O95398 923 aa30.96■■■□□ 2.55
VARS-220ENST00000461874 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP30.95■■■□□ 2.55
VARS-220ENST00000461874 HECW1Q76N89 1606 aa30.95■■■□□ 2.54
VARS-220ENST00000461874 CDK11AQ9UQ88 783 aaPredicted RBP30.91■■■□□ 2.54
VARS-220ENST00000461874 TTC37Q6PGP7 1564 aa30.88■■■□□ 2.53
VARS-220ENST00000461874 AKNAQ7Z591 1439 aa30.87■■■□□ 2.53
VARS-220ENST00000461874 FANCAO15360 1455 aa30.87■■■□□ 2.53
VARS-220ENST00000461874 FRMPD1Q5SYB0 1578 aa30.82■■■□□ 2.52
VARS-220ENST00000461874 DENND4BO75064 1496 aaPredicted RBP30.82■■■□□ 2.52
VARS-220ENST00000461874 PLCH2O75038 1416 aa30.81■■■□□ 2.52
VARS-220ENST00000461874 CASKIN1Q8WXD9 1431 aa30.8■■■□□ 2.52
VARS-220ENST00000461874 TROQ12816 1431 aaPredicted RBP30.79■■■□□ 2.52
VARS-220ENST00000461874 CFAP74Q9C0B2 1584 aa30.79■■■□□ 2.52
VARS-220ENST00000461874 CLIP1P30622 1438 aa30.77■■■□□ 2.52
VARS-220ENST00000461874 PCF11O94913 1555 aaKnown RBP30.72■■■□□ 2.51
VARS-220ENST00000461874 LRRIQ1Q96JM4 1722 aa30.71■■■□□ 2.51
VARS-220ENST00000461874 EFCAB2Q5VUJ9 269 aa30.71■■■□□ 2.51
VARS-220ENST00000461874 CCDC18Q5T9S5 1454 aa30.7■■■□□ 2.51
VARS-220ENST00000461874 RICTORQ6R327 1708 aa30.7■■■□□ 2.51
VARS-220ENST00000461874 KIF14Q15058 1648 aa30.7■■■□□ 2.51
VARS-220ENST00000461874 SCAPERQ9BY12 1400 aa30.68■■■□□ 2.5
VARS-220ENST00000461874 FYCO1Q9BQS8 1478 aa30.66■■■□□ 2.5
VARS-220ENST00000461874 ARHGEF40Q8TER5 1519 aa30.64■■■□□ 2.5
VARS-220ENST00000461874 MYO5CQ9NQX4 1742 aa30.64■■■□□ 2.5
VARS-220ENST00000461874 ZMYM4Q5VZL5 1548 aa30.63■■■□□ 2.49
VARS-220ENST00000461874 ARID4BQ4LE39 1312 aaPredicted RBP30.63■■■□□ 2.49
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms