RNA–Protein interactions for RNA: ENST00000460289.5

PTPN4-208, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-208ENST00000460289 PRG4Q92954 1404 aaPredicted RBP39.06■■■■□ 3.84
PTPN4-208ENST00000460289 RUSC2Q8N2Y8 1516 aa39.05■■■■□ 3.84
PTPN4-208ENST00000460289 KIAA0586Q9BVV6 1533 aa39.04■■■■□ 3.84
PTPN4-208ENST00000460289 TRHP20396 242 aaPredicted RBP38.9■■■■□ 3.82
PTPN4-208ENST00000460289 RAPGEF2Q9Y4G8 1499 aa38.89■■■■□ 3.82
PTPN4-208ENST00000460289 IQGAP2Q13576 1575 aa38.71■■■■□ 3.79
PTPN4-208ENST00000460289 CARMIL2Q6F5E8 1435 aa38.67■■■■□ 3.78
PTPN4-208ENST00000460289 PRXQ9BXM0 1461 aa38.64■■■■□ 3.78
PTPN4-208ENST00000460289 CSRNP3Q8WYN3 585 aa38.6■■■■□ 3.77
PTPN4-208ENST00000460289 PTPRGP23470 1445 aa38.57■■■■□ 3.77
PTPN4-208ENST00000460289 NPM1P06748 294 aaKnown RBP eCLIP38.56■■■■□ 3.76
PTPN4-208ENST00000460289 TNIKQ9UKE5 1360 aa38.56■■■■□ 3.76
PTPN4-208ENST00000460289 EEA1Q15075 1411 aa38.54■■■■□ 3.76
PTPN4-208ENST00000460289 UGGT2Q9NYU1 1516 aa38.5■■■■□ 3.75
PTPN4-208ENST00000460289 TTBK1Q5TCY1 1321 aaPredicted RBP38.48■■■■□ 3.75
PTPN4-208ENST00000460289 DISP1Q96F81 1524 aa38.48■■■■□ 3.75
PTPN4-208ENST00000460289 CHIC1Q5VXU3 224 aa38.47■■■■□ 3.75
PTPN4-208ENST00000460289 ADCY10Q96PN6 1610 aa38.42■■■■□ 3.74
PTPN4-208ENST00000460289 CTTNBP2Q8WZ74 1663 aa38.42■■■■□ 3.74
PTPN4-208ENST00000460289 FAM9AQ8IZU1 332 aaPredicted RBP38.35■■■■□ 3.73
PTPN4-208ENST00000460289 KIAA0556O60303 1618 aa38.33■■■■□ 3.73
PTPN4-208ENST00000460289 GOLGA3Q08378 1498 aa38.32■■■■□ 3.72
PTPN4-208ENST00000460289 MAPKBP1O60336 1514 aa38.3■■■■□ 3.72
PTPN4-208ENST00000460289 UACAQ9BZF9 1416 aa38.28■■■■□ 3.72
PTPN4-208ENST00000460289 UHRF1BP1LA0JNW5 1464 aa38.25■■■■□ 3.71
PTPN4-208ENST00000460289 ABCC2Q92887 1545 aa38.23■■■■□ 3.71
PTPN4-208ENST00000460289 FAM69CQ0P6D2 419 aa38.2■■■■□ 3.71
PTPN4-208ENST00000460289 ABCC10Q5T3U5 1492 aa38.2■■■■□ 3.71
PTPN4-208ENST00000460289 KIF13AQ9H1H9 1805 aa38.14■■■■□ 3.7
PTPN4-208ENST00000460289 KIF21BO75037 1637 aa38.08■■■■□ 3.69
PTPN4-208ENST00000460289 KDM5BQ9UGL1 1544 aa38.06■■■■□ 3.68
PTPN4-208ENST00000460289 DIP2BQ9P265 1576 aa38.06■■■■□ 3.68
PTPN4-208ENST00000460289 P3H3Q8IVL6 736 aa38.04■■■■□ 3.68
PTPN4-208ENST00000460289 PLB1Q6P1J6 1458 aa38.03■■■■□ 3.68
PTPN4-208ENST00000460289 ASXL2Q76L83 1435 aa38.03■■■■□ 3.68
PTPN4-208ENST00000460289 SAMD9Q5K651 1589 aa37.95■■■■□ 3.67
PTPN4-208ENST00000460289 ABCA8O94911 1581 aa37.94■■■■□ 3.66
PTPN4-208ENST00000460289 RANGAP1P46060 587 aaPredicted RBP37.94■■■■□ 3.66
PTPN4-208ENST00000460289 ZCCHC11Q5TAX3 1644 aaKnown RBP37.91■■■■□ 3.66
PTPN4-208ENST00000460289 UBTFP17480 764 aaKnown RBP37.91■■■■□ 3.66
PTPN4-208ENST00000460289 EHMT2Q96KQ7 1210 aa37.86■■■■□ 3.65
PTPN4-208ENST00000460289 GLI2P10070 1586 aa37.83■■■■□ 3.65
PTPN4-208ENST00000460289 EPRSP07814 1512 aaKnown RBP37.79■■■■□ 3.64
PTPN4-208ENST00000460289 WDR7Q9Y4E6 1490 aa37.77■■■■□ 3.64
PTPN4-208ENST00000460289 EFCAB5A4FU69 1503 aa37.76■■■■□ 3.63
PTPN4-208ENST00000460289 FHOD3Q2V2M9 1422 aa37.74■■■■□ 3.63
PTPN4-208ENST00000460289 TSPOAP1O95153 1857 aa37.73■■■■□ 3.63
PTPN4-208ENST00000460289 ARID3CA6NKF2 412 aa37.68■■■■□ 3.62
PTPN4-208ENST00000460289 ATP10BO94823 1461 aa37.68■■■■□ 3.62
PTPN4-208ENST00000460289 RAPGEF6Q8TEU7 1601 aa37.67■■■■□ 3.62
PTPN4-208ENST00000460289 KCNH8Q96L42 1107 aa37.66■■■■□ 3.62
PTPN4-208ENST00000460289 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP37.6■■■■□ 3.61
PTPN4-208ENST00000460289 HNRNPUL2Q1KMD3 747 aaKnown RBP37.6■■■■□ 3.61
PTPN4-208ENST00000460289 MAP3K4Q9Y6R4 1608 aa37.59■■■■□ 3.61
PTPN4-208ENST00000460289 KDM6BO15054 1643 aa37.57■■■■□ 3.6
PTPN4-208ENST00000460289 NUP153P49790 1475 aaKnown RBP37.55■■■■□ 3.6
PTPN4-208ENST00000460289 PPRC1Q5VV67 1664 aaKnown RBP37.54■■■■□ 3.6
PTPN4-208ENST00000460289 TEX14Q8IWB6 1497 aa37.54■■■■□ 3.6
PTPN4-208ENST00000460289 CD109Q6YHK3 1445 aa37.5■■■■□ 3.59
PTPN4-208ENST00000460289 ARHGAP35Q9NRY4 1499 aa37.5■■■■□ 3.59
PTPN4-208ENST00000460289 FMN1Q68DA7 1419 aa37.47■■■■□ 3.59
PTPN4-208ENST00000460289 CFAP43Q8NDM7 1665 aa37.44■■■■□ 3.58
PTPN4-208ENST00000460289 PLEKHD1A6NEE1 506 aa37.43■■■■□ 3.58
PTPN4-208ENST00000460289 MAGI3Q5TCQ9 1506 aa37.41■■■■□ 3.58
PTPN4-208ENST00000460289 ATP1B4Q9UN42 357 aaPredicted RBP37.35■■■■□ 3.57
PTPN4-208ENST00000460289 COL17A1Q9UMD9 1497 aaPredicted RBP37.31■■■■□ 3.56
PTPN4-208ENST00000460289 ABCA9Q8IUA7 1624 aa37.29■■■■□ 3.56
PTPN4-208ENST00000460289 HECW1Q76N89 1606 aa37.25■■■■□ 3.55
PTPN4-208ENST00000460289 AEBP2Q6ZN18 517 aaPredicted RBP37.24■■■■□ 3.55
PTPN4-208ENST00000460289 CDK13Q14004 1512 aaKnown RBP37.22■■■■□ 3.55
PTPN4-208ENST00000460289 CDK11AQ9UQ88 783 aaPredicted RBP37.22■■■■□ 3.55
PTPN4-208ENST00000460289 CLIP1P30622 1438 aa37.2■■■■□ 3.55
PTPN4-208ENST00000460289 PHLDB1Q86UU1 1377 aa37.19■■■■□ 3.54
PTPN4-208ENST00000460289 ARAP3Q8WWN8 1544 aa37.11■■■■□ 3.53
PTPN4-208ENST00000460289 CASKIN1Q8WXD9 1431 aa37.1■■■■□ 3.53
PTPN4-208ENST00000460289 NEO1Q92859 1461 aa37.1■■■■□ 3.53
PTPN4-208ENST00000460289 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP37.07■■■■□ 3.53
PTPN4-208ENST00000460289 CCDC18Q5T9S5 1454 aa37■■■■□ 3.51
PTPN4-208ENST00000460289 PCF11O94913 1555 aaKnown RBP37■■■■□ 3.51
PTPN4-208ENST00000460289 TROQ12816 1431 aaPredicted RBP36.98■■■■□ 3.51
PTPN4-208ENST00000460289 TTC37Q6PGP7 1564 aa36.97■■■■□ 3.51
PTPN4-208ENST00000460289 FYCO1Q9BQS8 1478 aa36.97■■■■□ 3.51
PTPN4-208ENST00000460289 KDM4FA0A1W2PPD8 638 aa36.95■■■■□ 3.51
PTPN4-208ENST00000460289 FANCAO15360 1455 aa36.94■■■■□ 3.5
PTPN4-208ENST00000460289 LRRIQ1Q96JM4 1722 aa36.93■■■■□ 3.5
PTPN4-208ENST00000460289 RAPGEF3O95398 923 aa36.93■■■■□ 3.5
PTPN4-208ENST00000460289 PLCH2O75038 1416 aa36.93■■■■□ 3.5
PTPN4-208ENST00000460289 AKNAQ7Z591 1439 aa36.93■■■■□ 3.5
PTPN4-208ENST00000460289 CEP162Q5TB80 1403 aa36.92■■■■□ 3.5
PTPN4-208ENST00000460289 LOC105371045A0A1W2PR82 267 aa36.89■■■■□ 3.5
PTPN4-208ENST00000460289 CFAP74Q9C0B2 1584 aa36.89■■■■□ 3.5
PTPN4-208ENST00000460289 KIF14Q15058 1648 aa36.88■■■■□ 3.49
PTPN4-208ENST00000460289 DENND4BO75064 1496 aaPredicted RBP36.84■■■■□ 3.49
PTPN4-208ENST00000460289 EFCAB2Q5VUJ9 269 aa36.84■■■■□ 3.49
PTPN4-208ENST00000460289 ADGRL1O94910 1474 aa36.77■■■■□ 3.48
PTPN4-208ENST00000460289 MYO5CQ9NQX4 1742 aa36.77■■■■□ 3.48
PTPN4-208ENST00000460289 FRMPD1Q5SYB0 1578 aa36.73■■■■□ 3.47
PTPN4-208ENST00000460289 SCAPERQ9BY12 1400 aa36.72■■■■□ 3.47
PTPN4-208ENST00000460289 ARHGAP5Q13017 1502 aa36.69■■■■□ 3.46
PTPN4-208ENST00000460289 RICTORQ6R327 1708 aa36.68■■■■□ 3.46
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms