RNA–Protein interactions for RNA: ENST00000459860.1

SSNA1-202, Transcript of SS nuclear autoantigen 1, humanhuman

TSL 1 (best)

Gene SSNA1, Length 1,170 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSNA1-202ENST00000459860 CARMIL1Q5VZK9 1371 aa36.61■■■■□ 3.45
SSNA1-202ENST00000459860 PRG4Q92954 1404 aaPredicted RBP36.55■■■■□ 3.44
SSNA1-202ENST00000459860 JPH4Q96JJ6 628 aa36.55■■■■□ 3.44
SSNA1-202ENST00000459860 CHIC1Q5VXU3 224 aa36.5■■■■□ 3.43
SSNA1-202ENST00000459860 RAPGEF2Q9Y4G8 1499 aa36.44■■■■□ 3.42
SSNA1-202ENST00000459860 EEA1Q15075 1411 aa36.41■■■■□ 3.42
SSNA1-202ENST00000459860 KIAA0586Q9BVV6 1533 aa36.37■■■■□ 3.41
SSNA1-202ENST00000459860 PRXQ9BXM0 1461 aa36.28■■■■□ 3.4
SSNA1-202ENST00000459860 CSRNP3Q8WYN3 585 aa36.26■■■■□ 3.4
SSNA1-202ENST00000459860 IQGAP2Q13576 1575 aa36.24■■■■□ 3.39
SSNA1-202ENST00000459860 CTTNBP2Q8WZ74 1663 aa36.22■■■■□ 3.39
SSNA1-202ENST00000459860 FAM9AQ8IZU1 332 aaPredicted RBP36.17■■■■□ 3.38
SSNA1-202ENST00000459860 AEBP2Q6ZN18 517 aaPredicted RBP36.15■■■■□ 3.38
SSNA1-202ENST00000459860 ABCC10Q5T3U5 1492 aa36.12■■■■□ 3.37
SSNA1-202ENST00000459860 NPM1P06748 294 aaKnown RBP eCLIP36.12■■■■□ 3.37
SSNA1-202ENST00000459860 KIF13AQ9H1H9 1805 aa36.11■■■■□ 3.37
SSNA1-202ENST00000459860 FAM69CQ0P6D2 419 aa36.1■■■■□ 3.37
SSNA1-202ENST00000459860 MAPKBP1O60336 1514 aa36.09■■■■□ 3.37
SSNA1-202ENST00000459860 ADCY10Q96PN6 1610 aa36.09■■■■□ 3.37
SSNA1-202ENST00000459860 CARMIL2Q6F5E8 1435 aa36.04■■■■□ 3.36
SSNA1-202ENST00000459860 KIF21BO75037 1637 aa36.04■■■■□ 3.36
SSNA1-202ENST00000459860 UGGT2Q9NYU1 1516 aa35.99■■■■□ 3.35
SSNA1-202ENST00000459860 PTPRGP23470 1445 aa35.97■■■■□ 3.35
SSNA1-202ENST00000459860 DIP2BQ9P265 1576 aa35.96■■■■□ 3.35
SSNA1-202ENST00000459860 TNIKQ9UKE5 1360 aa35.89■■■■□ 3.34
SSNA1-202ENST00000459860 DISP1Q96F81 1524 aa35.89■■■■□ 3.34
SSNA1-202ENST00000459860 KIAA0556O60303 1618 aa35.89■■■■□ 3.34
SSNA1-202ENST00000459860 GOLGA3Q08378 1498 aa35.86■■■■□ 3.33
SSNA1-202ENST00000459860 TTBK1Q5TCY1 1321 aaPredicted RBP35.82■■■■□ 3.32
SSNA1-202ENST00000459860 ABCC2Q92887 1545 aa35.78■■■■□ 3.32
SSNA1-202ENST00000459860 UHRF1BP1LA0JNW5 1464 aa35.73■■■■□ 3.31
SSNA1-202ENST00000459860 EHMT2Q96KQ7 1210 aa35.69■■■■□ 3.3
SSNA1-202ENST00000459860 ASXL2Q76L83 1435 aa35.68■■■■□ 3.3
SSNA1-202ENST00000459860 UACAQ9BZF9 1416 aa35.68■■■■□ 3.3
SSNA1-202ENST00000459860 UBTFP17480 764 aaKnown RBP35.68■■■■□ 3.3
SSNA1-202ENST00000459860 SAMD9Q5K651 1589 aa35.67■■■■□ 3.3
SSNA1-202ENST00000459860 PLB1Q6P1J6 1458 aa35.64■■■■□ 3.3
SSNA1-202ENST00000459860 KDM6BO15054 1643 aa35.63■■■■□ 3.29
SSNA1-202ENST00000459860 GLI2P10070 1586 aa35.57■■■■□ 3.28
SSNA1-202ENST00000459860 RANGAP1P46060 587 aaPredicted RBP35.57■■■■□ 3.28
SSNA1-202ENST00000459860 EFCAB5A4FU69 1503 aa35.56■■■■□ 3.28
SSNA1-202ENST00000459860 KDM5BQ9UGL1 1544 aa35.56■■■■□ 3.28
SSNA1-202ENST00000459860 TSPOAP1O95153 1857 aa35.52■■■■□ 3.28
SSNA1-202ENST00000459860 KDM4FA0A1W2PPD8 638 aa35.52■■■■□ 3.28
SSNA1-202ENST00000459860 P3H3Q8IVL6 736 aa35.52■■■■□ 3.28
SSNA1-202ENST00000459860 EPRSP07814 1512 aaKnown RBP35.47■■■■□ 3.27
SSNA1-202ENST00000459860 ABCA8O94911 1581 aa35.45■■■■□ 3.27
SSNA1-202ENST00000459860 PPRC1Q5VV67 1664 aaKnown RBP35.44■■■■□ 3.26
SSNA1-202ENST00000459860 FHOD3Q2V2M9 1422 aa35.41■■■■□ 3.26
SSNA1-202ENST00000459860 ZCCHC11Q5TAX3 1644 aaKnown RBP35.39■■■■□ 3.26
SSNA1-202ENST00000459860 COL17A1Q9UMD9 1497 aaPredicted RBP35.37■■■■□ 3.25
SSNA1-202ENST00000459860 RAPGEF6Q8TEU7 1601 aa35.34■■■■□ 3.25
SSNA1-202ENST00000459860 MAP3K4Q9Y6R4 1608 aa35.31■■■■□ 3.24
SSNA1-202ENST00000459860 ARHGAP35Q9NRY4 1499 aa35.29■■■■□ 3.24
SSNA1-202ENST00000459860 WDR7Q9Y4E6 1490 aa35.29■■■■□ 3.24
SSNA1-202ENST00000459860 TEX14Q8IWB6 1497 aa35.24■■■■□ 3.23
SSNA1-202ENST00000459860 FMN1Q68DA7 1419 aa35.2■■■■□ 3.23
SSNA1-202ENST00000459860 CLIP1P30622 1438 aa35.15■■■■□ 3.22
SSNA1-202ENST00000459860 NUP153P49790 1475 aaKnown RBP35.12■■■■□ 3.21
SSNA1-202ENST00000459860 ARID3CA6NKF2 412 aa35.11■■■■□ 3.21
SSNA1-202ENST00000459860 ATP10BO94823 1461 aa35.1■■■■□ 3.21
SSNA1-202ENST00000459860 ADGRL1O94910 1474 aa35.1■■■■□ 3.21
SSNA1-202ENST00000459860 CD109Q6YHK3 1445 aa35.1■■■■□ 3.21
SSNA1-202ENST00000459860 KCNH8Q96L42 1107 aa35.1■■■■□ 3.21
SSNA1-202ENST00000459860 MAGI3Q5TCQ9 1506 aa35.1■■■■□ 3.21
SSNA1-202ENST00000459860 HECW1Q76N89 1606 aa35.08■■■■□ 3.21
SSNA1-202ENST00000459860 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP35.05■■■■□ 3.2
SSNA1-202ENST00000459860 HNRNPUL2Q1KMD3 747 aaKnown RBP35.05■■■■□ 3.2
SSNA1-202ENST00000459860 CEP162Q5TB80 1403 aa34.99■■■■□ 3.19
SSNA1-202ENST00000459860 LOC105371045A0A1W2PR82 267 aa34.97■■■■□ 3.19
SSNA1-202ENST00000459860 ATP1B4Q9UN42 357 aaPredicted RBP34.97■■■■□ 3.19
SSNA1-202ENST00000459860 CFAP43Q8NDM7 1665 aa34.97■■■■□ 3.19
SSNA1-202ENST00000459860 PCF11O94913 1555 aaKnown RBP34.94■■■■□ 3.18
SSNA1-202ENST00000459860 CDK13Q14004 1512 aaKnown RBP34.91■■■■□ 3.18
SSNA1-202ENST00000459860 CASKIN1Q8WXD9 1431 aa34.89■■■■□ 3.18
SSNA1-202ENST00000459860 FYCO1Q9BQS8 1478 aa34.86■■■■□ 3.17
SSNA1-202ENST00000459860 PLEKHD1A6NEE1 506 aa34.85■■■■□ 3.17
SSNA1-202ENST00000459860 LRRIQ1Q96JM4 1722 aa34.84■■■■□ 3.17
SSNA1-202ENST00000459860 ARAP3Q8WWN8 1544 aa34.82■■■■□ 3.16
SSNA1-202ENST00000459860 CCDC18Q5T9S5 1454 aa34.81■■■■□ 3.16
SSNA1-202ENST00000459860 ABCA9Q8IUA7 1624 aa34.8■■■■□ 3.16
SSNA1-202ENST00000459860 CDK11AQ9UQ88 783 aaPredicted RBP34.78■■■■□ 3.16
SSNA1-202ENST00000459860 PHLDB1Q86UU1 1377 aa34.73■■■■□ 3.15
SSNA1-202ENST00000459860 KIF14Q15058 1648 aa34.64■■■■□ 3.14
SSNA1-202ENST00000459860 RAPGEF3O95398 923 aa34.64■■■■□ 3.14
SSNA1-202ENST00000459860 NEO1Q92859 1461 aa34.64■■■■□ 3.14
SSNA1-202ENST00000459860 TROQ12816 1431 aaPredicted RBP34.64■■■■□ 3.14
SSNA1-202ENST00000459860 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP34.63■■■■□ 3.13
SSNA1-202ENST00000459860 HECW2Q9P2P5 1572 aa34.62■■■■□ 3.13
SSNA1-202ENST00000459860 TTC37Q6PGP7 1564 aa34.61■■■■□ 3.13
SSNA1-202ENST00000459860 VPS8Q8N3P4 1428 aa34.58■■■■□ 3.13
SSNA1-202ENST00000459860 MYO5CQ9NQX4 1742 aa34.53■■■■□ 3.12
SSNA1-202ENST00000459860 CFAP74Q9C0B2 1584 aa34.53■■■■□ 3.12
SSNA1-202ENST00000459860 ILDR1Q86SU0 546 aaPredicted RBP34.52■■■■□ 3.12
SSNA1-202ENST00000459860 FRMPD1Q5SYB0 1578 aa34.49■■■■□ 3.11
SSNA1-202ENST00000459860 MTUS2Q5JR59 1369 aa34.43■■■■□ 3.1
SSNA1-202ENST00000459860 FANCAO15360 1455 aa34.42■■■■□ 3.1
SSNA1-202ENST00000459860 AKNAQ7Z591 1439 aa34.41■■■■□ 3.1
SSNA1-202ENST00000459860 EHBP1L1Q8N3D4 1523 aa34.4■■■■□ 3.1
SSNA1-202ENST00000459860 PLCH2O75038 1416 aa34.4■■■■□ 3.1
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms