RNA–Protein interactions for RNA: ENST00000458707.1

VPS50-208, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 1,898 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-208ENST00000458707 SAMD1Q6SPF0 538 aaPredicted RBP12.7□□□□□ -0.38
VPS50-208ENST00000458707 VPS8Q8N3P4 1428 aa12.69□□□□□ -0.38
VPS50-208ENST00000458707 CLIP1P30622 1438 aa12.67□□□□□ -0.38
VPS50-208ENST00000458707 ABCB7O75027 752 aa12.67□□□□□ -0.38
VPS50-208ENST00000458707 BIVM-ERCC5R4GMW8 1640 aa12.63□□□□□ -0.39
VPS50-208ENST00000458707 TOP2BQ02880 1626 aa12.62□□□□□ -0.39
VPS50-208ENST00000458707 RAPGEF2Q9Y4G8 1499 aa12.6□□□□□ -0.39
VPS50-208ENST00000458707 ATAD2BQ9ULI0 1458 aa12.58□□□□□ -0.39
VPS50-208ENST00000458707 ERICH3Q5RHP9 1530 aa12.58□□□□□ -0.4
VPS50-208ENST00000458707 MIER1Q8N108 512 aa12.58□□□□□ -0.4
VPS50-208ENST00000458707 CLSPNQ9HAW4 1339 aa12.57□□□□□ -0.4
VPS50-208ENST00000458707 SLC24A1O60721 1099 aa12.57□□□□□ -0.4
VPS50-208ENST00000458707 BCL11AQ9H165 835 aa12.57□□□□□ -0.4
VPS50-208ENST00000458707 CUX2O14529 1486 aa12.56□□□□□ -0.4
VPS50-208ENST00000458707 CC2D2AQ9P2K1 1620 aa12.54□□□□□ -0.4
VPS50-208ENST00000458707 RBM42Q9BTD8 480 aaKnown RBP12.53□□□□□ -0.4
VPS50-208ENST00000458707 YTHDC1Q96MU7 727 aaKnown RBP12.51□□□□□ -0.41
VPS50-208ENST00000458707 PRXQ9BXM0 1461 aa12.5□□□□□ -0.41
VPS50-208ENST00000458707 ARAP1Q96P48 1450 aa12.5□□□□□ -0.41
VPS50-208ENST00000458707 DHX57Q6P158 1386 aaKnown RBP12.48□□□□□ -0.41
VPS50-208ENST00000458707 MYCNP04198 464 aaPredicted RBP12.48□□□□□ -0.41
VPS50-208ENST00000458707 RRBP1Q9P2E9 1410 aaKnown RBP12.45□□□□□ -0.42
VPS50-208ENST00000458707 PRDM2Q13029 1718 aa12.44□□□□□ -0.42
VPS50-208ENST00000458707 HMGXB3Q12766 1538 aa12.41□□□□□ -0.42
VPS50-208ENST00000458707 CUX1P39880 1505 aa12.39□□□□□ -0.43
VPS50-208ENST00000458707 POLA2Q14181 598 aa12.36□□□□□ -0.43
VPS50-208ENST00000458707 KANK4Q5T7N3 995 aaPredicted RBP12.35□□□□□ -0.43
VPS50-208ENST00000458707 KIF27Q86VH2 1401 aa12.34□□□□□ -0.43
VPS50-208ENST00000458707 MAP3K1Q13233 1512 aa12.34□□□□□ -0.43
VPS50-208ENST00000458707 ARHGAP35Q9NRY4 1499 aa12.34□□□□□ -0.43
VPS50-208ENST00000458707 NCAPD3P42695 1498 aa12.33□□□□□ -0.44
VPS50-208ENST00000458707 CCNB3Q8WWL7 1395 aa12.32□□□□□ -0.44
VPS50-208ENST00000458707 TIAM1Q13009 1591 aa12.3□□□□□ -0.44
VPS50-208ENST00000458707 RANGAP1P46060 587 aaPredicted RBP12.3□□□□□ -0.44
VPS50-208ENST00000458707 SUPT16HQ9Y5B9 1047 aaKnown RBP12.3□□□□□ -0.44
VPS50-208ENST00000458707 MAPKBP1O60336 1514 aa12.3□□□□□ -0.44
VPS50-208ENST00000458707 CHRDL2Q6WN34 429 aa12.29□□□□□ -0.44
VPS50-208ENST00000458707 CFTRP13569 1480 aa12.28□□□□□ -0.44
VPS50-208ENST00000458707 CFAP43Q8NDM7 1665 aa12.28□□□□□ -0.44
VPS50-208ENST00000458707 RAB3GAP2Q9H2M9 1393 aa12.23□□□□□ -0.45
VPS50-208ENST00000458707 ERCC6Q03468 1493 aa12.21□□□□□ -0.46
VPS50-208ENST00000458707 ZBTB12Q9Y330 459 aaPredicted RBP12.21□□□□□ -0.46
VPS50-208ENST00000458707 LRRC9Q6ZRR7 1453 aa12.2□□□□□ -0.46
VPS50-208ENST00000458707 SETD5Q9C0A6 1442 aa12.19□□□□□ -0.46
VPS50-208ENST00000458707 FOXD4L1Q9NU39 408 aa12.19□□□□□ -0.46
VPS50-208ENST00000458707 WDR97A6NE52 1622 aa12.19□□□□□ -0.46
VPS50-208ENST00000458707 DAXXQ9UER7 740 aaPredicted RBP12.19□□□□□ -0.46
VPS50-208ENST00000458707 AKT1S1Q96B36 256 aa12.17□□□□□ -0.46
VPS50-208ENST00000458707 IGF1RP08069 1367 aa12.17□□□□□ -0.46
VPS50-208ENST00000458707 PCF11O94913 1555 aaKnown RBP12.16□□□□□ -0.46
VPS50-208ENST00000458707 SLC4A1APQ9BWU0 796 aaKnown RBP12.16□□□□□ -0.46
VPS50-208ENST00000458707 TSHZ2Q9NRE2 1034 aa12.16□□□□□ -0.46
VPS50-208ENST00000458707 FHAD1B1AJZ9 1412 aa12.14□□□□□ -0.47
VPS50-208ENST00000458707 TIMELESSQ9UNS1 1208 aa12.14□□□□□ -0.47
VPS50-208ENST00000458707 PHLDB1Q86UU1 1377 aa12.13□□□□□ -0.47
VPS50-208ENST00000458707 CTTNBP2Q8WZ74 1663 aa12.12□□□□□ -0.47
VPS50-208ENST00000458707 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.12□□□□□ -0.47
VPS50-208ENST00000458707 ATF5Q9Y2D1 282 aaPredicted RBP12.12□□□□□ -0.47
VPS50-208ENST00000458707 CARMIL1Q5VZK9 1371 aa12.11□□□□□ -0.47
VPS50-208ENST00000458707 FGD5Q6ZNL6 1462 aa12.11□□□□□ -0.47
VPS50-208ENST00000458707 EFCAB5A4FU69 1503 aa12.1□□□□□ -0.47
VPS50-208ENST00000458707 ITGAEP38570 1179 aa12.1□□□□□ -0.47
VPS50-208ENST00000458707 KCNH8Q96L42 1107 aa12.1□□□□□ -0.47
VPS50-208ENST00000458707 AQRO60306 1485 aaKnown RBP eCLIP12.09□□□□□ -0.47
VPS50-208ENST00000458707 FYCO1Q9BQS8 1478 aa12.09□□□□□ -0.47
VPS50-208ENST00000458707 PPP1R15AO75807 674 aaPredicted RBP12.08□□□□□ -0.48
VPS50-208ENST00000458707 CUL7Q14999 1698 aa12.07□□□□□ -0.48
VPS50-208ENST00000458707 CCER2I3L3R5 266 aa12.06□□□□□ -0.48
VPS50-208ENST00000458707 CADPSQ9ULU8 1353 aa12.05□□□□□ -0.48
VPS50-208ENST00000458707 ANP32EQ9BTT0 268 aa12.05□□□□□ -0.48
VPS50-208ENST00000458707 CASKIN1Q8WXD9 1431 aa12.05□□□□□ -0.48
VPS50-208ENST00000458707 LRRIQ1Q96JM4 1722 aa12.04□□□□□ -0.48
VPS50-208ENST00000458707 SIN3AQ96ST3 1273 aa12.04□□□□□ -0.48
VPS50-208ENST00000458707 DDX10Q13206 875 aaKnown RBP12.03□□□□□ -0.48
VPS50-208ENST00000458707 DNMBPQ6XZF7 1577 aa12.02□□□□□ -0.49
VPS50-208ENST00000458707 REM2Q8IYK8 340 aaPredicted RBP12.01□□□□□ -0.49
VPS50-208ENST00000458707 ABCA10Q8WWZ4 1543 aa12.01□□□□□ -0.49
VPS50-208ENST00000458707 PTPN23Q9H3S7 1636 aa12□□□□□ -0.49
VPS50-208ENST00000458707 FAM50AQ14320 339 aaKnown RBP12□□□□□ -0.49
VPS50-208ENST00000458707 FKBP8Q14318 412 aa11.99□□□□□ -0.49
VPS50-208ENST00000458707 FGD6Q6ZV73 1430 aa11.99□□□□□ -0.49
VPS50-208ENST00000458707 SNAPC4Q5SXM2 1469 aa11.99□□□□□ -0.49
VPS50-208ENST00000458707 KIF21AQ7Z4S6 1674 aa11.98□□□□□ -0.49
VPS50-208ENST00000458707 SP7Q8TDD2 431 aaPredicted RBP11.98□□□□□ -0.49
VPS50-208ENST00000458707 FHOD3Q2V2M9 1422 aa11.98□□□□□ -0.49
VPS50-208ENST00000458707 CCDC18Q5T9S5 1454 aa11.98□□□□□ -0.49
VPS50-208ENST00000458707 SAMD9Q5K651 1589 aa11.98□□□□□ -0.49
VPS50-208ENST00000458707 ILDR1Q86SU0 546 aaPredicted RBP11.97□□□□□ -0.49
VPS50-208ENST00000458707 OSCARQ8IYS5 282 aa11.97□□□□□ -0.49
VPS50-208ENST00000458707 HFM1A2PYH4 1435 aa11.97□□□□□ -0.49
VPS50-208ENST00000458707 UACAQ9BZF9 1416 aa11.97□□□□□ -0.49
VPS50-208ENST00000458707 THOC2Q8NI27 1593 aaKnown RBP11.97□□□□□ -0.49
VPS50-208ENST00000458707 KDM5BQ9UGL1 1544 aa11.96□□□□□ -0.49
VPS50-208ENST00000458707 SUPT6HQ7KZ85 1726 aaKnown RBP11.96□□□□□ -0.5
VPS50-208ENST00000458707 GCC2Q8IWJ2 1684 aa11.96□□□□□ -0.5
VPS50-208ENST00000458707 FMN1Q68DA7 1419 aa11.96□□□□□ -0.5
VPS50-208ENST00000458707 ANP32CO43423 234 aa11.95□□□□□ -0.5
VPS50-208ENST00000458707 FANCD2Q9BXW9 1451 aa11.95□□□□□ -0.5
VPS50-208ENST00000458707 NEFLP07196 543 aa11.94□□□□□ -0.5
VPS50-208ENST00000458707 PIP4P2Q8N4L2 257 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms