RNA–Protein interactions for RNA: ENST00000458268.5

USP39-209, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 751 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-209ENST00000458268 PRG4Q92954 1404 aaPredicted RBP31.53■■■□□ 2.64
USP39-209ENST00000458268 JPH4Q96JJ6 628 aa31.51■■■□□ 2.63
USP39-209ENST00000458268 KIAA0586Q9BVV6 1533 aa31.47■■■□□ 2.63
USP39-209ENST00000458268 RAPGEF2Q9Y4G8 1499 aa31.46■■■□□ 2.63
USP39-209ENST00000458268 IQGAP2Q13576 1575 aa31.36■■■□□ 2.61
USP39-209ENST00000458268 FAM9AQ8IZU1 332 aaPredicted RBP31.35■■■□□ 2.61
USP39-209ENST00000458268 TTBK1Q5TCY1 1321 aaPredicted RBP31.34■■■□□ 2.61
USP39-209ENST00000458268 TRHP20396 242 aaPredicted RBP31.34■■■□□ 2.61
USP39-209ENST00000458268 CHIC1Q5VXU3 224 aa31.31■■■□□ 2.6
USP39-209ENST00000458268 CTTNBP2Q8WZ74 1663 aa31.28■■■□□ 2.6
USP39-209ENST00000458268 CSRNP3Q8WYN3 585 aa31.24■■■□□ 2.59
USP39-209ENST00000458268 PRXQ9BXM0 1461 aa31.23■■■□□ 2.59
USP39-209ENST00000458268 CARMIL2Q6F5E8 1435 aa31.2■■■□□ 2.59
USP39-209ENST00000458268 EEA1Q15075 1411 aa31.18■■■□□ 2.58
USP39-209ENST00000458268 PTPRGP23470 1445 aa31.11■■■□□ 2.57
USP39-209ENST00000458268 UGGT2Q9NYU1 1516 aa31.1■■■□□ 2.57
USP39-209ENST00000458268 EHMT2Q96KQ7 1210 aa31.09■■■□□ 2.57
USP39-209ENST00000458268 DISP1Q96F81 1524 aa31.08■■■□□ 2.57
USP39-209ENST00000458268 TNIKQ9UKE5 1360 aa31.08■■■□□ 2.57
USP39-209ENST00000458268 ADCY10Q96PN6 1610 aa31.08■■■□□ 2.57
USP39-209ENST00000458268 KIAA0556O60303 1618 aa31.07■■■□□ 2.56
USP39-209ENST00000458268 NPM1P06748 294 aaKnown RBP eCLIP31.05■■■□□ 2.56
USP39-209ENST00000458268 RANGAP1P46060 587 aaPredicted RBP30.99■■■□□ 2.55
USP39-209ENST00000458268 GOLGA3Q08378 1498 aa30.95■■■□□ 2.55
USP39-209ENST00000458268 KIF21BO75037 1637 aa30.95■■■□□ 2.54
USP39-209ENST00000458268 P3H3Q8IVL6 736 aa30.91■■■□□ 2.54
USP39-209ENST00000458268 UACAQ9BZF9 1416 aa30.87■■■□□ 2.53
USP39-209ENST00000458268 KIF13AQ9H1H9 1805 aa30.85■■■□□ 2.53
USP39-209ENST00000458268 ABCC2Q92887 1545 aa30.83■■■□□ 2.53
USP39-209ENST00000458268 UBTFP17480 764 aaKnown RBP30.82■■■□□ 2.52
USP39-209ENST00000458268 MAPKBP1O60336 1514 aa30.82■■■□□ 2.52
USP39-209ENST00000458268 UHRF1BP1LA0JNW5 1464 aa30.78■■■□□ 2.52
USP39-209ENST00000458268 PLB1Q6P1J6 1458 aa30.78■■■□□ 2.52
USP39-209ENST00000458268 FAM69CQ0P6D2 419 aa30.76■■■□□ 2.51
USP39-209ENST00000458268 SAMD9Q5K651 1589 aa30.75■■■□□ 2.51
USP39-209ENST00000458268 ZCCHC11Q5TAX3 1644 aaKnown RBP30.73■■■□□ 2.51
USP39-209ENST00000458268 DIP2BQ9P265 1576 aa30.73■■■□□ 2.51
USP39-209ENST00000458268 ABCC10Q5T3U5 1492 aa30.72■■■□□ 2.51
USP39-209ENST00000458268 ARID3CA6NKF2 412 aa30.69■■■□□ 2.5
USP39-209ENST00000458268 ASXL2Q76L83 1435 aa30.69■■■□□ 2.5
USP39-209ENST00000458268 ABCA8O94911 1581 aa30.68■■■□□ 2.5
USP39-209ENST00000458268 FHOD3Q2V2M9 1422 aa30.67■■■□□ 2.5
USP39-209ENST00000458268 TSPOAP1O95153 1857 aa30.67■■■□□ 2.5
USP39-209ENST00000458268 KDM5BQ9UGL1 1544 aa30.66■■■□□ 2.5
USP39-209ENST00000458268 EFCAB5A4FU69 1503 aa30.58■■■□□ 2.49
USP39-209ENST00000458268 RAPGEF6Q8TEU7 1601 aa30.57■■■□□ 2.48
USP39-209ENST00000458268 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP30.51■■■□□ 2.47
USP39-209ENST00000458268 HNRNPUL2Q1KMD3 747 aaKnown RBP30.51■■■□□ 2.47
USP39-209ENST00000458268 WDR7Q9Y4E6 1490 aa30.49■■■□□ 2.47
USP39-209ENST00000458268 EPRSP07814 1512 aaKnown RBP30.47■■■□□ 2.47
USP39-209ENST00000458268 KCNH8Q96L42 1107 aa30.47■■■□□ 2.47
USP39-209ENST00000458268 GLI2P10070 1586 aa30.44■■■□□ 2.46
USP39-209ENST00000458268 ATP10BO94823 1461 aa30.43■■■□□ 2.46
USP39-209ENST00000458268 ARHGAP35Q9NRY4 1499 aa30.43■■■□□ 2.46
USP39-209ENST00000458268 ATP1B4Q9UN42 357 aaPredicted RBP30.42■■■□□ 2.46
USP39-209ENST00000458268 NUP153P49790 1475 aaKnown RBP30.39■■■□□ 2.46
USP39-209ENST00000458268 MAP3K4Q9Y6R4 1608 aa30.36■■■□□ 2.45
USP39-209ENST00000458268 PPRC1Q5VV67 1664 aaKnown RBP30.36■■■□□ 2.45
USP39-209ENST00000458268 KDM6BO15054 1643 aa30.35■■■□□ 2.45
USP39-209ENST00000458268 FMN1Q68DA7 1419 aa30.3■■■□□ 2.44
USP39-209ENST00000458268 CFAP43Q8NDM7 1665 aa30.28■■■□□ 2.44
USP39-209ENST00000458268 CDK13Q14004 1512 aaKnown RBP30.27■■■□□ 2.44
USP39-209ENST00000458268 HECW1Q76N89 1606 aa30.27■■■□□ 2.44
USP39-209ENST00000458268 CLIP1P30622 1438 aa30.24■■■□□ 2.43
USP39-209ENST00000458268 CD109Q6YHK3 1445 aa30.23■■■□□ 2.43
USP39-209ENST00000458268 TEX14Q8IWB6 1497 aa30.23■■■□□ 2.43
USP39-209ENST00000458268 PLEKHD1A6NEE1 506 aa30.2■■■□□ 2.43
USP39-209ENST00000458268 PCF11O94913 1555 aaKnown RBP30.16■■■□□ 2.42
USP39-209ENST00000458268 ABCA9Q8IUA7 1624 aa30.14■■■□□ 2.42
USP39-209ENST00000458268 LRRIQ1Q96JM4 1722 aa30.13■■■□□ 2.41
USP39-209ENST00000458268 LOC105371045A0A1W2PR82 267 aa30.12■■■□□ 2.41
USP39-209ENST00000458268 MAGI3Q5TCQ9 1506 aa30.11■■■□□ 2.41
USP39-209ENST00000458268 CEP162Q5TB80 1403 aa30.06■■■□□ 2.4
USP39-209ENST00000458268 COL17A1Q9UMD9 1497 aaPredicted RBP30.05■■■□□ 2.4
USP39-209ENST00000458268 CASKIN1Q8WXD9 1431 aa30.04■■■□□ 2.4
USP39-209ENST00000458268 TTC37Q6PGP7 1564 aa30.03■■■□□ 2.4
USP39-209ENST00000458268 CDK11AQ9UQ88 783 aaPredicted RBP30.02■■■□□ 2.4
USP39-209ENST00000458268 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP30.01■■■□□ 2.39
USP39-209ENST00000458268 FYCO1Q9BQS8 1478 aa29.99■■■□□ 2.39
USP39-209ENST00000458268 CCDC18Q5T9S5 1454 aa29.97■■■□□ 2.39
USP39-209ENST00000458268 KIF14Q15058 1648 aa29.96■■■□□ 2.39
USP39-209ENST00000458268 TROQ12816 1431 aaPredicted RBP29.91■■■□□ 2.38
USP39-209ENST00000458268 MYO5CQ9NQX4 1742 aa29.88■■■□□ 2.37
USP39-209ENST00000458268 AEBP2Q6ZN18 517 aaPredicted RBP29.88■■■□□ 2.37
USP39-209ENST00000458268 NEO1Q92859 1461 aa29.87■■■□□ 2.37
USP39-209ENST00000458268 FANCAO15360 1455 aa29.87■■■□□ 2.37
USP39-209ENST00000458268 CFAP74Q9C0B2 1584 aa29.86■■■□□ 2.37
USP39-209ENST00000458268 ARAP3Q8WWN8 1544 aa29.84■■■□□ 2.37
USP39-209ENST00000458268 RAPGEF3O95398 923 aa29.82■■■□□ 2.36
USP39-209ENST00000458268 PHLDB1Q86UU1 1377 aa29.8■■■□□ 2.36
USP39-209ENST00000458268 AKNAQ7Z591 1439 aa29.79■■■□□ 2.36
USP39-209ENST00000458268 PLCH2O75038 1416 aa29.77■■■□□ 2.36
USP39-209ENST00000458268 ARHGAP5Q13017 1502 aa29.76■■■□□ 2.36
USP39-209ENST00000458268 FRMPD1Q5SYB0 1578 aa29.73■■■□□ 2.35
USP39-209ENST00000458268 DENND4BO75064 1496 aaPredicted RBP29.73■■■□□ 2.35
USP39-209ENST00000458268 MTUS2Q5JR59 1369 aa29.72■■■□□ 2.35
USP39-209ENST00000458268 ADGRL1O94910 1474 aa29.72■■■□□ 2.35
USP39-209ENST00000458268 EFCAB2Q5VUJ9 269 aa29.71■■■□□ 2.35
USP39-209ENST00000458268 RICTORQ6R327 1708 aa29.7■■■□□ 2.34
USP39-209ENST00000458268 CDC42BPBQ9Y5S2 1711 aa29.69■■■□□ 2.34
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms