RNA–Protein interactions for RNA: ENST00000457422.6

CCDC43-202, Transcript of coiled-coil domain containing 43, humanhuman

TSL 1 (best) BASIC

Gene CCDC43, Length 2,058 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43-202ENST00000457422 GAPVD1Q14C86 1478 aa25.03■■□□□ 1.6
CCDC43-202ENST00000457422 TARBP1Q13395 1621 aaKnown RBP25.02■■□□□ 1.6
CCDC43-202ENST00000457422 CFAP43Q8NDM7 1665 aa25.01■■□□□ 1.59
CCDC43-202ENST00000457422 TDRD9Q8NDG6 1382 aaKnown RBP25.01■■□□□ 1.59
CCDC43-202ENST00000457422 PCF11O94913 1555 aaKnown RBP24.99■■□□□ 1.59
CCDC43-202ENST00000457422 LRRC9Q6ZRR7 1453 aa24.96■■□□□ 1.59
CCDC43-202ENST00000457422 CCNB3Q8WWL7 1395 aa24.96■■□□□ 1.59
CCDC43-202ENST00000457422 AQRO60306 1485 aaKnown RBP eCLIP24.95■■□□□ 1.59
CCDC43-202ENST00000457422 FHOD3Q2V2M9 1422 aa24.94■■□□□ 1.58
CCDC43-202ENST00000457422 FYCO1Q9BQS8 1478 aa24.94■■□□□ 1.58
CCDC43-202ENST00000457422 P3H3Q8IVL6 736 aa24.93■■□□□ 1.58
CCDC43-202ENST00000457422 MRC2Q9UBG0 1479 aa24.91■■□□□ 1.58
CCDC43-202ENST00000457422 SAMD9Q5K651 1589 aa24.9■■□□□ 1.58
CCDC43-202ENST00000457422 CASKIN1Q8WXD9 1431 aa24.89■■□□□ 1.58
CCDC43-202ENST00000457422 CLSPNQ9HAW4 1339 aa24.87■■□□□ 1.57
CCDC43-202ENST00000457422 PBRM1Q86U86 1689 aa24.87■■□□□ 1.57
CCDC43-202ENST00000457422 FMN1Q68DA7 1419 aa24.84■■□□□ 1.57
CCDC43-202ENST00000457422 DHX57Q6P158 1386 aaKnown RBP24.81■■□□□ 1.56
CCDC43-202ENST00000457422 SNAPC4Q5SXM2 1469 aa24.8■■□□□ 1.56
CCDC43-202ENST00000457422 PHLDB1Q86UU1 1377 aa24.77■■□□□ 1.56
CCDC43-202ENST00000457422 WDR62O43379 1518 aa24.77■■□□□ 1.56
CCDC43-202ENST00000457422 ATP1B4Q9UN42 357 aaPredicted RBP24.76■■□□□ 1.55
CCDC43-202ENST00000457422 ADAMTS12P58397 1594 aa24.76■■□□□ 1.55
CCDC43-202ENST00000457422 THOC2Q8NI27 1593 aaKnown RBP24.73■■□□□ 1.55
CCDC43-202ENST00000457422 ZNF316A6NFI3 1004 aaPredicted RBP24.73■■□□□ 1.55
CCDC43-202ENST00000457422 IFT140Q96RY7 1462 aa24.72■■□□□ 1.55
CCDC43-202ENST00000457422 DIEXFQ68CQ4 756 aaKnown RBP24.71■■□□□ 1.55
CCDC43-202ENST00000457422 GRIN2BQ13224 1484 aa24.71■■□□□ 1.55
CCDC43-202ENST00000457422 ITGAEP38570 1179 aa24.7■■□□□ 1.54
CCDC43-202ENST00000457422 LRRIQ1Q96JM4 1722 aa24.68■■□□□ 1.54
CCDC43-202ENST00000457422 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.67■■□□□ 1.54
CCDC43-202ENST00000457422 IQGAP2Q13576 1575 aa24.65■■□□□ 1.54
CCDC43-202ENST00000457422 ZNF608Q9ULD9 1512 aaPredicted RBP24.62■■□□□ 1.53
CCDC43-202ENST00000457422 RAB3GAP2Q9H2M9 1393 aa24.61■■□□□ 1.53
CCDC43-202ENST00000457422 SETD5Q9C0A6 1442 aa24.59■■□□□ 1.53
CCDC43-202ENST00000457422 FAM50AQ14320 339 aaKnown RBP24.58■■□□□ 1.53
CCDC43-202ENST00000457422 EHBP1L1Q8N3D4 1523 aa24.55■■□□□ 1.52
CCDC43-202ENST00000457422 UGGT2Q9NYU1 1516 aa24.55■■□□□ 1.52
CCDC43-202ENST00000457422 MTUS2Q5JR59 1369 aa24.55■■□□□ 1.52
CCDC43-202ENST00000457422 FGD6Q6ZV73 1430 aa24.54■■□□□ 1.52
CCDC43-202ENST00000457422 CCDC18Q5T9S5 1454 aa24.54■■□□□ 1.52
CCDC43-202ENST00000457422 ERCC6Q03468 1493 aa24.53■■□□□ 1.52
CCDC43-202ENST00000457422 EIF4G3O43432 1585 aaKnown RBP24.53■■□□□ 1.52
CCDC43-202ENST00000457422 HECW1Q76N89 1606 aa24.53■■□□□ 1.52
CCDC43-202ENST00000457422 SUPT6HQ7KZ85 1726 aaKnown RBP24.52■■□□□ 1.52
CCDC43-202ENST00000457422 MAPKBP1O60336 1514 aa24.5■■□□□ 1.51
CCDC43-202ENST00000457422 NCOA2Q15596 1464 aa24.48■■□□□ 1.51
CCDC43-202ENST00000457422 ARHGEF11O15085 1522 aa24.47■■□□□ 1.51
CCDC43-202ENST00000457422 KIAA0586Q9BVV6 1533 aa24.46■■□□□ 1.51
CCDC43-202ENST00000457422 MYOM3Q5VTT5 1437 aa24.45■■□□□ 1.5
CCDC43-202ENST00000457422 GRIN2AQ12879 1464 aa24.44■■□□□ 1.5
CCDC43-202ENST00000457422 MAGI3Q5TCQ9 1506 aa24.43■■□□□ 1.5
CCDC43-202ENST00000457422 MAGI1Q96QZ7 1491 aaPredicted RBP24.42■■□□□ 1.5
CCDC43-202ENST00000457422 EPRSP07814 1512 aaKnown RBP24.41■■□□□ 1.5
CCDC43-202ENST00000457422 KIAA0556O60303 1618 aa24.4■■□□□ 1.5
CCDC43-202ENST00000457422 DISP1Q96F81 1524 aa24.37■■□□□ 1.49
CCDC43-202ENST00000457422 PTPN23Q9H3S7 1636 aa24.36■■□□□ 1.49
CCDC43-202ENST00000457422 HFM1A2PYH4 1435 aa24.33■■□□□ 1.49
CCDC43-202ENST00000457422 SYNJ2O15056 1496 aa24.33■■□□□ 1.48
CCDC43-202ENST00000457422 TCOF1Q13428 1488 aaKnown RBP24.32■■□□□ 1.48
CCDC43-202ENST00000457422 CDK13Q14004 1512 aaKnown RBP24.32■■□□□ 1.48
CCDC43-202ENST00000457422 PTPRKQ15262 1439 aa24.31■■□□□ 1.48
CCDC43-202ENST00000457422 CEP170Q5SW79 1584 aa24.28■■□□□ 1.48
CCDC43-202ENST00000457422 RAPGEF6Q8TEU7 1601 aa24.26■■□□□ 1.47
CCDC43-202ENST00000457422 MIA2Q96PC5 1412 aa24.25■■□□□ 1.47
CCDC43-202ENST00000457422 NAIPQ13075 1403 aa24.23■■□□□ 1.47
CCDC43-202ENST00000457422 TIMELESSQ9UNS1 1208 aa24.23■■□□□ 1.47
CCDC43-202ENST00000457422 ACIN1Q9UKV3 1341 aaKnown RBP24.22■■□□□ 1.47
CCDC43-202ENST00000457422 NUP153P49790 1475 aaKnown RBP24.22■■□□□ 1.47
CCDC43-202ENST00000457422 NUP160Q12769 1436 aa24.22■■□□□ 1.47
CCDC43-202ENST00000457422 ARID3CA6NKF2 412 aa24.21■■□□□ 1.47
CCDC43-202ENST00000457422 MIER1Q8N108 512 aa24.21■■□□□ 1.47
CCDC43-202ENST00000457422 CHMP7Q8WUX9 453 aaPredicted RBP24.21■■□□□ 1.47
CCDC43-202ENST00000457422 UACAQ9BZF9 1416 aa24.21■■□□□ 1.47
CCDC43-202ENST00000457422 CENPBP07199 599 aaPredicted RBP24.2■■□□□ 1.47
CCDC43-202ENST00000457422 GCC2Q8IWJ2 1684 aa24.2■■□□□ 1.46
CCDC43-202ENST00000457422 AKNAQ7Z591 1439 aa24.19■■□□□ 1.46
CCDC43-202ENST00000457422 SCAF1Q9H7N4 1312 aaKnown RBP24.19■■□□□ 1.46
CCDC43-202ENST00000457422 SIN3AQ96ST3 1273 aa24.17■■□□□ 1.46
CCDC43-202ENST00000457422 NEUROD1Q13562 356 aa24.15■■□□□ 1.46
CCDC43-202ENST00000457422 FBLN2P98095 1184 aa24.13■■□□□ 1.45
CCDC43-202ENST00000457422 CARMIL2Q6F5E8 1435 aa24.1■■□□□ 1.45
CCDC43-202ENST00000457422 CDK11AQ9UQ88 783 aaPredicted RBP24.07■■□□□ 1.44
CCDC43-202ENST00000457422 PLB1Q6P1J6 1458 aa24.05■■□□□ 1.44
CCDC43-202ENST00000457422 ADCY10Q96PN6 1610 aa24.05■■□□□ 1.44
CCDC43-202ENST00000457422 DNMT1P26358 1616 aaKnown RBP24.04■■□□□ 1.44
CCDC43-202ENST00000457422 TROQ12816 1431 aaPredicted RBP24.04■■□□□ 1.44
CCDC43-202ENST00000457422 JPH4Q96JJ6 628 aa24.04■■□□□ 1.44
CCDC43-202ENST00000457422 CHIC2Q9UKJ5 165 aa24.03■■□□□ 1.44
CCDC43-202ENST00000457422 RRP7BPQ9NSQ0 103 aa24.03■■□□□ 1.44
CCDC43-202ENST00000457422 ITSN2Q9NZM3 1697 aa24.01■■□□□ 1.43
CCDC43-202ENST00000457422 PPP1R15AO75807 674 aaPredicted RBP24■■□□□ 1.43
CCDC43-202ENST00000457422 YTHDC1Q96MU7 727 aaKnown RBP24■■□□□ 1.43
CCDC43-202ENST00000457422 ROCK1Q13464 1354 aa24■■□□□ 1.43
CCDC43-202ENST00000457422 DAPK1P53355 1430 aa24■■□□□ 1.43
CCDC43-202ENST00000457422 ABCA8O94911 1581 aa23.99■■□□□ 1.43
CCDC43-202ENST00000457422 KDM6BO15054 1643 aa23.98■■□□□ 1.43
CCDC43-202ENST00000457422 PRG4Q92954 1404 aaPredicted RBP23.98■■□□□ 1.43
CCDC43-202ENST00000457422 TONSLQ96HA7 1378 aa23.95■■□□□ 1.43
CCDC43-202ENST00000457422 ABCC5O15440 1437 aa23.95■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms