RNA–Protein interactions for RNA: ENST00000454830.6

CLK3-203, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 3,787 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-203ENST00000454830 FBLN2P98095 1184 aa20.42■□□□□ 0.86
CLK3-203ENST00000454830 CUL7Q14999 1698 aa20.4■□□□□ 0.86
CLK3-203ENST00000454830 FHAD1B1AJZ9 1412 aa20.39■□□□□ 0.86
CLK3-203ENST00000454830 FAM50AQ14320 339 aaKnown RBP20.39■□□□□ 0.85
CLK3-203ENST00000454830 ARID3CA6NKF2 412 aa20.36■□□□□ 0.85
CLK3-203ENST00000454830 ABCA5Q8WWZ7 1642 aa20.34■□□□□ 0.85
CLK3-203ENST00000454830 WDR97A6NE52 1622 aa20.32■□□□□ 0.84
CLK3-203ENST00000454830 ZNF608Q9ULD9 1512 aaPredicted RBP20.31■□□□□ 0.84
CLK3-203ENST00000454830 TARBP1Q13395 1621 aaKnown RBP20.3■□□□□ 0.84
CLK3-203ENST00000454830 CCNB3Q8WWL7 1395 aa20.29■□□□□ 0.84
CLK3-203ENST00000454830 CHMP7Q8WUX9 453 aaPredicted RBP20.28■□□□□ 0.84
CLK3-203ENST00000454830 GRIN2BQ13224 1484 aa20.27■□□□□ 0.84
CLK3-203ENST00000454830 IFT140Q96RY7 1462 aa20.27■□□□□ 0.84
CLK3-203ENST00000454830 FMN1Q68DA7 1419 aa20.25■□□□□ 0.83
CLK3-203ENST00000454830 PCF11O94913 1555 aaKnown RBP20.24■□□□□ 0.83
CLK3-203ENST00000454830 CTTNBP2Q8WZ74 1663 aa20.24■□□□□ 0.83
CLK3-203ENST00000454830 TIAM1Q13009 1591 aa20.24■□□□□ 0.83
CLK3-203ENST00000454830 MTUS2Q5JR59 1369 aa20.23■□□□□ 0.83
CLK3-203ENST00000454830 EFCAB5A4FU69 1503 aa20.23■□□□□ 0.83
CLK3-203ENST00000454830 LRRC9Q6ZRR7 1453 aa20.22■□□□□ 0.83
CLK3-203ENST00000454830 WDR62O43379 1518 aa20.19■□□□□ 0.82
CLK3-203ENST00000454830 CASKIN1Q8WXD9 1431 aa20.18■□□□□ 0.82
CLK3-203ENST00000454830 PHLDB1Q86UU1 1377 aa20.18■□□□□ 0.82
CLK3-203ENST00000454830 PBRM1Q86U86 1689 aa20.17■□□□□ 0.82
CLK3-203ENST00000454830 RRBP1Q9P2E9 1410 aaKnown RBP20.17■□□□□ 0.82
CLK3-203ENST00000454830 SNAPC4Q5SXM2 1469 aa20.17■□□□□ 0.82
CLK3-203ENST00000454830 FYCO1Q9BQS8 1478 aa20.16■□□□□ 0.82
CLK3-203ENST00000454830 ADAMTS12P58397 1594 aa20.12■□□□□ 0.81
CLK3-203ENST00000454830 MAP3K1Q13233 1512 aa20.09■□□□□ 0.81
CLK3-203ENST00000454830 IQGAP2Q13576 1575 aa20.09■□□□□ 0.81
CLK3-203ENST00000454830 EIF4G3O43432 1585 aaKnown RBP20.07■□□□□ 0.8
CLK3-203ENST00000454830 DIEXFQ68CQ4 756 aaKnown RBP20.03■□□□□ 0.8
CLK3-203ENST00000454830 DHX57Q6P158 1386 aaKnown RBP20.03■□□□□ 0.8
CLK3-203ENST00000454830 THOC2Q8NI27 1593 aaKnown RBP20.02■□□□□ 0.8
CLK3-203ENST00000454830 SAMD9Q5K651 1589 aa20.02■□□□□ 0.8
CLK3-203ENST00000454830 GRIN2AQ12879 1464 aa20.02■□□□□ 0.8
CLK3-203ENST00000454830 RAB3GAP2Q9H2M9 1393 aa20.02■□□□□ 0.8
CLK3-203ENST00000454830 CFAP43Q8NDM7 1665 aa20.01■□□□□ 0.79
CLK3-203ENST00000454830 ZNF316A6NFI3 1004 aaPredicted RBP20■□□□□ 0.79
CLK3-203ENST00000454830 KIAA0586Q9BVV6 1533 aa19.99■□□□□ 0.79
CLK3-203ENST00000454830 JPH4Q96JJ6 628 aa19.98■□□□□ 0.79
CLK3-203ENST00000454830 CHIC2Q9UKJ5 165 aa19.97■□□□□ 0.79
CLK3-203ENST00000454830 NEUROD1Q13562 356 aa19.97■□□□□ 0.79
CLK3-203ENST00000454830 SETD5Q9C0A6 1442 aa19.96■□□□□ 0.79
CLK3-203ENST00000454830 MAGI1Q96QZ7 1491 aaPredicted RBP19.95■□□□□ 0.78
CLK3-203ENST00000454830 SYNJ2O15056 1496 aa19.94■□□□□ 0.78
CLK3-203ENST00000454830 FGD6Q6ZV73 1430 aa19.94■□□□□ 0.78
CLK3-203ENST00000454830 NCOA2Q15596 1464 aa19.94■□□□□ 0.78
CLK3-203ENST00000454830 CDK11AQ9UQ88 783 aaPredicted RBP19.93■□□□□ 0.78
CLK3-203ENST00000454830 CDK13Q14004 1512 aaKnown RBP19.92■□□□□ 0.78
CLK3-203ENST00000454830 CLSPNQ9HAW4 1339 aa19.9■□□□□ 0.78
CLK3-203ENST00000454830 RRP7BPQ9NSQ0 103 aa19.89■□□□□ 0.78
CLK3-203ENST00000454830 CCDC18Q5T9S5 1454 aa19.89■□□□□ 0.77
CLK3-203ENST00000454830 EPRSP07814 1512 aaKnown RBP19.89■□□□□ 0.77
CLK3-203ENST00000454830 UGGT2Q9NYU1 1516 aa19.88■□□□□ 0.77
CLK3-203ENST00000454830 HECW1Q76N89 1606 aa19.88■□□□□ 0.77
CLK3-203ENST00000454830 CARMIL2Q6F5E8 1435 aa19.88■□□□□ 0.77
CLK3-203ENST00000454830 MYOM3Q5VTT5 1437 aa19.87■□□□□ 0.77
CLK3-203ENST00000454830 ZNF777Q9ULD5 760 aaPredicted RBP19.86■□□□□ 0.77
CLK3-203ENST00000454830 EHBP1L1Q8N3D4 1523 aa19.85■□□□□ 0.77
CLK3-203ENST00000454830 SIN3AQ96ST3 1273 aa19.85■□□□□ 0.77
CLK3-203ENST00000454830 DISP1Q96F81 1524 aa19.85■□□□□ 0.77
CLK3-203ENST00000454830 TRIM52Q96A61 297 aa19.84■□□□□ 0.77
CLK3-203ENST00000454830 SUPT6HQ7KZ85 1726 aaKnown RBP19.83■□□□□ 0.76
CLK3-203ENST00000454830 KIAA0556O60303 1618 aa19.82■□□□□ 0.76
CLK3-203ENST00000454830 CEP170Q5SW79 1584 aa19.82■□□□□ 0.76
CLK3-203ENST00000454830 LRRIQ1Q96JM4 1722 aa19.82■□□□□ 0.76
CLK3-203ENST00000454830 MAGI3Q5TCQ9 1506 aa19.8■□□□□ 0.76
CLK3-203ENST00000454830 PLB1Q6P1J6 1458 aa19.79■□□□□ 0.76
CLK3-203ENST00000454830 PLEKHD1A6NEE1 506 aa19.76■□□□□ 0.75
CLK3-203ENST00000454830 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.75■□□□□ 0.75
CLK3-203ENST00000454830 NUP160Q12769 1436 aa19.75■□□□□ 0.75
CLK3-203ENST00000454830 CFDP1Q9UEE9 299 aaPredicted RBP19.74■□□□□ 0.75
CLK3-203ENST00000454830 ZNF644Q9H582 1327 aaPredicted RBP19.74■□□□□ 0.75
CLK3-203ENST00000454830 PTPRKQ15262 1439 aa19.74■□□□□ 0.75
CLK3-203ENST00000454830 NUP153P49790 1475 aaKnown RBP19.74■□□□□ 0.75
CLK3-203ENST00000454830 PRG4Q92954 1404 aaPredicted RBP19.73■□□□□ 0.75
CLK3-203ENST00000454830 RAPGEF6Q8TEU7 1601 aa19.71■□□□□ 0.75
CLK3-203ENST00000454830 PTPN23Q9H3S7 1636 aa19.71■□□□□ 0.75
CLK3-203ENST00000454830 YTHDC1Q96MU7 727 aaKnown RBP19.7■□□□□ 0.74
CLK3-203ENST00000454830 PTPRGP23470 1445 aa19.69■□□□□ 0.74
CLK3-203ENST00000454830 HFM1A2PYH4 1435 aa19.65■□□□□ 0.74
CLK3-203ENST00000454830 MAPKBP1O60336 1514 aa19.64■□□□□ 0.73
CLK3-203ENST00000454830 TROQ12816 1431 aaPredicted RBP19.63■□□□□ 0.73
CLK3-203ENST00000454830 NAIPQ13075 1403 aa19.63■□□□□ 0.73
CLK3-203ENST00000454830 MIER1Q8N108 512 aa19.63■□□□□ 0.73
CLK3-203ENST00000454830 TONSLQ96HA7 1378 aa19.63■□□□□ 0.73
CLK3-203ENST00000454830 MIA2Q96PC5 1412 aa19.62■□□□□ 0.73
CLK3-203ENST00000454830 KCNH8Q96L42 1107 aa19.6■□□□□ 0.73
CLK3-203ENST00000454830 HIRIP3Q9BW71 556 aaPredicted RBP19.59■□□□□ 0.73
CLK3-203ENST00000454830 ARHGEF11O15085 1522 aa19.59■□□□□ 0.73
CLK3-203ENST00000454830 FOXD1Q16676 465 aa19.58■□□□□ 0.73
CLK3-203ENST00000454830 UACAQ9BZF9 1416 aa19.57■□□□□ 0.72
CLK3-203ENST00000454830 CHD1O14646 1710 aa19.56■□□□□ 0.72
CLK3-203ENST00000454830 TCOF1Q13428 1488 aaKnown RBP19.54■□□□□ 0.72
CLK3-203ENST00000454830 CENPBP07199 599 aaPredicted RBP19.54■□□□□ 0.72
CLK3-203ENST00000454830 ATP10BO94823 1461 aa19.53■□□□□ 0.72
CLK3-203ENST00000454830 DAPK1P53355 1430 aa19.52■□□□□ 0.72
CLK3-203ENST00000454830 SLC4A1APQ9BWU0 796 aaKnown RBP19.52■□□□□ 0.72
CLK3-203ENST00000454830 MPHOSPH9Q99550 1183 aa19.52■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 121.3 ms