RNA–Protein interactions for RNA: ENST00000449062.1

RTFDC1-204, Transcript of Protein RTF2 homolog, humanhuman

TSL 5

Gene RTFDC1, Length 852 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTFDC1-204ENST00000449062 CUL7Q14999 1698 aa24.02■■□□□ 1.44
RTFDC1-204ENST00000449062 PRG4Q92954 1404 aaPredicted RBP24.01■■□□□ 1.43
RTFDC1-204ENST00000449062 KIAA0586Q9BVV6 1533 aa24■■□□□ 1.43
RTFDC1-204ENST00000449062 RAPGEF2Q9Y4G8 1499 aa23.88■■□□□ 1.41
RTFDC1-204ENST00000449062 TRHP20396 242 aaPredicted RBP23.81■■□□□ 1.4
RTFDC1-204ENST00000449062 PRXQ9BXM0 1461 aa23.81■■□□□ 1.4
RTFDC1-204ENST00000449062 CSRNP3Q8WYN3 585 aa23.77■■□□□ 1.4
RTFDC1-204ENST00000449062 CHIC1Q5VXU3 224 aa23.76■■□□□ 1.39
RTFDC1-204ENST00000449062 IQGAP2Q13576 1575 aa23.73■■□□□ 1.39
RTFDC1-204ENST00000449062 PTPRGP23470 1445 aa23.7■■□□□ 1.38
RTFDC1-204ENST00000449062 DISP1Q96F81 1524 aa23.69■■□□□ 1.38
RTFDC1-204ENST00000449062 CARMIL2Q6F5E8 1435 aa23.69■■□□□ 1.38
RTFDC1-204ENST00000449062 TNIKQ9UKE5 1360 aa23.68■■□□□ 1.38
RTFDC1-204ENST00000449062 UGGT2Q9NYU1 1516 aa23.67■■□□□ 1.38
RTFDC1-204ENST00000449062 EEA1Q15075 1411 aa23.65■■□□□ 1.38
RTFDC1-204ENST00000449062 ADCY10Q96PN6 1610 aa23.59■■□□□ 1.37
RTFDC1-204ENST00000449062 NPM1P06748 294 aaKnown RBP eCLIP23.59■■□□□ 1.37
RTFDC1-204ENST00000449062 TTBK1Q5TCY1 1321 aaPredicted RBP23.58■■□□□ 1.36
RTFDC1-204ENST00000449062 FAM9AQ8IZU1 332 aaPredicted RBP23.57■■□□□ 1.36
RTFDC1-204ENST00000449062 UHRF1BP1LA0JNW5 1464 aa23.52■■□□□ 1.36
RTFDC1-204ENST00000449062 UACAQ9BZF9 1416 aa23.51■■□□□ 1.35
RTFDC1-204ENST00000449062 MAPKBP1O60336 1514 aa23.51■■□□□ 1.35
RTFDC1-204ENST00000449062 KIAA0556O60303 1618 aa23.51■■□□□ 1.35
RTFDC1-204ENST00000449062 CTTNBP2Q8WZ74 1663 aa23.5■■□□□ 1.35
RTFDC1-204ENST00000449062 ABCC2Q92887 1545 aa23.49■■□□□ 1.35
RTFDC1-204ENST00000449062 GOLGA3Q08378 1498 aa23.48■■□□□ 1.35
RTFDC1-204ENST00000449062 ABCC10Q5T3U5 1492 aa23.48■■□□□ 1.35
RTFDC1-204ENST00000449062 FAM69CQ0P6D2 419 aa23.46■■□□□ 1.35
RTFDC1-204ENST00000449062 KDM5BQ9UGL1 1544 aa23.41■■□□□ 1.34
RTFDC1-204ENST00000449062 KIF13AQ9H1H9 1805 aa23.39■■□□□ 1.33
RTFDC1-204ENST00000449062 P3H3Q8IVL6 736 aa23.39■■□□□ 1.33
RTFDC1-204ENST00000449062 PLB1Q6P1J6 1458 aa23.38■■□□□ 1.33
RTFDC1-204ENST00000449062 KIF21BO75037 1637 aa23.37■■□□□ 1.33
RTFDC1-204ENST00000449062 ASXL2Q76L83 1435 aa23.36■■□□□ 1.33
RTFDC1-204ENST00000449062 DIP2BQ9P265 1576 aa23.35■■□□□ 1.33
RTFDC1-204ENST00000449062 ABCA8O94911 1581 aa23.33■■□□□ 1.33
RTFDC1-204ENST00000449062 SAMD9Q5K651 1589 aa23.31■■□□□ 1.32
RTFDC1-204ENST00000449062 RANGAP1P46060 587 aaPredicted RBP23.26■■□□□ 1.31
RTFDC1-204ENST00000449062 UBTFP17480 764 aaKnown RBP23.25■■□□□ 1.31
RTFDC1-204ENST00000449062 ZCCHC11Q5TAX3 1644 aaKnown RBP23.24■■□□□ 1.31
RTFDC1-204ENST00000449062 EHMT2Q96KQ7 1210 aa23.24■■□□□ 1.31
RTFDC1-204ENST00000449062 GLI2P10070 1586 aa23.23■■□□□ 1.31
RTFDC1-204ENST00000449062 EPRSP07814 1512 aaKnown RBP23.23■■□□□ 1.31
RTFDC1-204ENST00000449062 ATP10BO94823 1461 aa23.2■■□□□ 1.3
RTFDC1-204ENST00000449062 FHOD3Q2V2M9 1422 aa23.2■■□□□ 1.3
RTFDC1-204ENST00000449062 WDR7Q9Y4E6 1490 aa23.17■■□□□ 1.3
RTFDC1-204ENST00000449062 ARID3CA6NKF2 412 aa23.14■■□□□ 1.29
RTFDC1-204ENST00000449062 EFCAB5A4FU69 1503 aa23.13■■□□□ 1.29
RTFDC1-204ENST00000449062 KCNH8Q96L42 1107 aa23.13■■□□□ 1.29
RTFDC1-204ENST00000449062 NUP153P49790 1475 aaKnown RBP23.11■■□□□ 1.29
RTFDC1-204ENST00000449062 RAPGEF6Q8TEU7 1601 aa23.09■■□□□ 1.29
RTFDC1-204ENST00000449062 ARHGAP35Q9NRY4 1499 aa23.09■■□□□ 1.29
RTFDC1-204ENST00000449062 PPRC1Q5VV67 1664 aaKnown RBP23.08■■□□□ 1.29
RTFDC1-204ENST00000449062 TSPOAP1O95153 1857 aa23.08■■□□□ 1.29
RTFDC1-204ENST00000449062 MAP3K4Q9Y6R4 1608 aa23.06■■□□□ 1.28
RTFDC1-204ENST00000449062 CD109Q6YHK3 1445 aa23.03■■□□□ 1.28
RTFDC1-204ENST00000449062 COL17A1Q9UMD9 1497 aaPredicted RBP23.03■■□□□ 1.28
RTFDC1-204ENST00000449062 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23■■□□□ 1.27
RTFDC1-204ENST00000449062 HNRNPUL2Q1KMD3 747 aaKnown RBP23■■□□□ 1.27
RTFDC1-204ENST00000449062 MAGI3Q5TCQ9 1506 aa22.99■■□□□ 1.27
RTFDC1-204ENST00000449062 KDM6BO15054 1643 aa22.98■■□□□ 1.27
RTFDC1-204ENST00000449062 FMN1Q68DA7 1419 aa22.98■■□□□ 1.27
RTFDC1-204ENST00000449062 PLEKHD1A6NEE1 506 aa22.97■■□□□ 1.27
RTFDC1-204ENST00000449062 TEX14Q8IWB6 1497 aa22.97■■□□□ 1.27
RTFDC1-204ENST00000449062 CFAP43Q8NDM7 1665 aa22.93■■□□□ 1.26
RTFDC1-204ENST00000449062 ABCA9Q8IUA7 1624 aa22.89■■□□□ 1.25
RTFDC1-204ENST00000449062 CDK13Q14004 1512 aaKnown RBP22.87■■□□□ 1.25
RTFDC1-204ENST00000449062 ATP1B4Q9UN42 357 aaPredicted RBP22.86■■□□□ 1.25
RTFDC1-204ENST00000449062 CLIP1P30622 1438 aa22.85■■□□□ 1.25
RTFDC1-204ENST00000449062 PHLDB1Q86UU1 1377 aa22.83■■□□□ 1.25
RTFDC1-204ENST00000449062 ARAP3Q8WWN8 1544 aa22.82■■□□□ 1.24
RTFDC1-204ENST00000449062 CASKIN1Q8WXD9 1431 aa22.82■■□□□ 1.24
RTFDC1-204ENST00000449062 HECW1Q76N89 1606 aa22.79■■□□□ 1.24
RTFDC1-204ENST00000449062 LOC105371045A0A1W2PR82 267 aa22.79■■□□□ 1.24
RTFDC1-204ENST00000449062 CDK11AQ9UQ88 783 aaPredicted RBP22.79■■□□□ 1.24
RTFDC1-204ENST00000449062 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.77■■□□□ 1.24
RTFDC1-204ENST00000449062 KDM4FA0A1W2PPD8 638 aa22.77■■□□□ 1.24
RTFDC1-204ENST00000449062 NEO1Q92859 1461 aa22.77■■□□□ 1.24
RTFDC1-204ENST00000449062 RAPGEF3O95398 923 aa22.73■■□□□ 1.23
RTFDC1-204ENST00000449062 AEBP2Q6ZN18 517 aaPredicted RBP22.73■■□□□ 1.23
RTFDC1-204ENST00000449062 TROQ12816 1431 aaPredicted RBP22.73■■□□□ 1.23
RTFDC1-204ENST00000449062 PLCH2O75038 1416 aa22.71■■□□□ 1.23
RTFDC1-204ENST00000449062 LRRIQ1Q96JM4 1722 aa22.7■■□□□ 1.22
RTFDC1-204ENST00000449062 PCF11O94913 1555 aaKnown RBP22.69■■□□□ 1.22
RTFDC1-204ENST00000449062 TTC37Q6PGP7 1564 aa22.69■■□□□ 1.22
RTFDC1-204ENST00000449062 CEP162Q5TB80 1403 aa22.69■■□□□ 1.22
RTFDC1-204ENST00000449062 FYCO1Q9BQS8 1478 aa22.68■■□□□ 1.22
RTFDC1-204ENST00000449062 AKNAQ7Z591 1439 aa22.68■■□□□ 1.22
RTFDC1-204ENST00000449062 FANCAO15360 1455 aa22.66■■□□□ 1.22
RTFDC1-204ENST00000449062 CCDC18Q5T9S5 1454 aa22.66■■□□□ 1.22
RTFDC1-204ENST00000449062 EFCAB2Q5VUJ9 269 aa22.63■■□□□ 1.21
RTFDC1-204ENST00000449062 KIF14Q15058 1648 aa22.61■■□□□ 1.21
RTFDC1-204ENST00000449062 DENND4BO75064 1496 aaPredicted RBP22.6■■□□□ 1.21
RTFDC1-204ENST00000449062 FRMPD1Q5SYB0 1578 aa22.58■■□□□ 1.2
RTFDC1-204ENST00000449062 SCAPERQ9BY12 1400 aa22.56■■□□□ 1.2
RTFDC1-204ENST00000449062 ADGRL1O94910 1474 aa22.55■■□□□ 1.2
RTFDC1-204ENST00000449062 CFAP74Q9C0B2 1584 aa22.52■■□□□ 1.2
RTFDC1-204ENST00000449062 RICTORQ6R327 1708 aa22.5■■□□□ 1.19
RTFDC1-204ENST00000449062 POGZQ7Z3K3 1410 aa22.48■■□□□ 1.19
RTFDC1-204ENST00000449062 MYO5CQ9NQX4 1742 aa22.48■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms