RNA–Protein interactions for RNA: ENST00000447376.1

SF3A1-204, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 5

Gene SF3A1, Length 418 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-204ENST00000447376 KIAA0586Q9BVV6 1533 aa27.44■■□□□ 1.98
SF3A1-204ENST00000447376 JPH4Q96JJ6 628 aa27.43■■□□□ 1.98
SF3A1-204ENST00000447376 PRG4Q92954 1404 aaPredicted RBP27.39■■□□□ 1.97
SF3A1-204ENST00000447376 EEA1Q15075 1411 aa27.36■■□□□ 1.97
SF3A1-204ENST00000447376 CHIC1Q5VXU3 224 aa27.34■■□□□ 1.97
SF3A1-204ENST00000447376 ERCC6L2Q5T890 1561 aa27.33■■□□□ 1.97
SF3A1-204ENST00000447376 IQGAP2Q13576 1575 aa27.3■■□□□ 1.96
SF3A1-204ENST00000447376 CSRNP3Q8WYN3 585 aa27.29■■□□□ 1.96
SF3A1-204ENST00000447376 PRXQ9BXM0 1461 aa27.25■■□□□ 1.95
SF3A1-204ENST00000447376 CARMIL2Q6F5E8 1435 aa27.24■■□□□ 1.95
SF3A1-204ENST00000447376 FAM9AQ8IZU1 332 aaPredicted RBP27.19■■□□□ 1.94
SF3A1-204ENST00000447376 CTTNBP2Q8WZ74 1663 aa27.18■■□□□ 1.94
SF3A1-204ENST00000447376 TRHP20396 242 aaPredicted RBP27.1■■□□□ 1.93
SF3A1-204ENST00000447376 UGGT2Q9NYU1 1516 aa27.1■■□□□ 1.93
SF3A1-204ENST00000447376 TNIKQ9UKE5 1360 aa27.09■■□□□ 1.93
SF3A1-204ENST00000447376 PTPRGP23470 1445 aa27.07■■□□□ 1.92
SF3A1-204ENST00000447376 TTBK1Q5TCY1 1321 aaPredicted RBP27.06■■□□□ 1.92
SF3A1-204ENST00000447376 GOLGA3Q08378 1498 aa27.06■■□□□ 1.92
SF3A1-204ENST00000447376 NPM1P06748 294 aaKnown RBP eCLIP27.05■■□□□ 1.92
SF3A1-204ENST00000447376 DISP1Q96F81 1524 aa27.02■■□□□ 1.92
SF3A1-204ENST00000447376 KIF21BO75037 1637 aa27.01■■□□□ 1.92
SF3A1-204ENST00000447376 KIAA0556O60303 1618 aa27.01■■□□□ 1.91
SF3A1-204ENST00000447376 ADCY10Q96PN6 1610 aa26.94■■□□□ 1.9
SF3A1-204ENST00000447376 UBTFP17480 764 aaKnown RBP26.88■■□□□ 1.89
SF3A1-204ENST00000447376 UACAQ9BZF9 1416 aa26.88■■□□□ 1.89
SF3A1-204ENST00000447376 EHMT2Q96KQ7 1210 aa26.85■■□□□ 1.89
SF3A1-204ENST00000447376 UHRF1BP1LA0JNW5 1464 aa26.84■■□□□ 1.89
SF3A1-204ENST00000447376 MAPKBP1O60336 1514 aa26.82■■□□□ 1.88
SF3A1-204ENST00000447376 ABCC2Q92887 1545 aa26.82■■□□□ 1.88
SF3A1-204ENST00000447376 RANGAP1P46060 587 aaPredicted RBP26.82■■□□□ 1.88
SF3A1-204ENST00000447376 P3H3Q8IVL6 736 aa26.79■■□□□ 1.88
SF3A1-204ENST00000447376 SAMD9Q5K651 1589 aa26.78■■□□□ 1.88
SF3A1-204ENST00000447376 EFCAB5A4FU69 1503 aa26.73■■□□□ 1.87
SF3A1-204ENST00000447376 PLB1Q6P1J6 1458 aa26.72■■□□□ 1.87
SF3A1-204ENST00000447376 ABCC10Q5T3U5 1492 aa26.69■■□□□ 1.86
SF3A1-204ENST00000447376 KDM5BQ9UGL1 1544 aa26.69■■□□□ 1.86
SF3A1-204ENST00000447376 FAM69CQ0P6D2 419 aa26.68■■□□□ 1.86
SF3A1-204ENST00000447376 ABCA8O94911 1581 aa26.67■■□□□ 1.86
SF3A1-204ENST00000447376 ASXL2Q76L83 1435 aa26.65■■□□□ 1.86
SF3A1-204ENST00000447376 ZCCHC11Q5TAX3 1644 aaKnown RBP26.65■■□□□ 1.86
SF3A1-204ENST00000447376 KIF13AQ9H1H9 1805 aa26.65■■□□□ 1.86
SF3A1-204ENST00000447376 FHOD3Q2V2M9 1422 aa26.64■■□□□ 1.85
SF3A1-204ENST00000447376 DIP2BQ9P265 1576 aa26.63■■□□□ 1.85
SF3A1-204ENST00000447376 RAPGEF6Q8TEU7 1601 aa26.58■■□□□ 1.85
SF3A1-204ENST00000447376 WDR7Q9Y4E6 1490 aa26.53■■□□□ 1.84
SF3A1-204ENST00000447376 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.52■■□□□ 1.84
SF3A1-204ENST00000447376 HNRNPUL2Q1KMD3 747 aaKnown RBP26.52■■□□□ 1.84
SF3A1-204ENST00000447376 FMN1Q68DA7 1419 aa26.51■■□□□ 1.83
SF3A1-204ENST00000447376 ARID3CA6NKF2 412 aa26.5■■□□□ 1.83
SF3A1-204ENST00000447376 ARHGAP35Q9NRY4 1499 aa26.49■■□□□ 1.83
SF3A1-204ENST00000447376 GLI2P10070 1586 aa26.49■■□□□ 1.83
SF3A1-204ENST00000447376 EPRSP07814 1512 aaKnown RBP26.48■■□□□ 1.83
SF3A1-204ENST00000447376 ATP10BO94823 1461 aa26.46■■□□□ 1.83
SF3A1-204ENST00000447376 NUP153P49790 1475 aaKnown RBP26.43■■□□□ 1.82
SF3A1-204ENST00000447376 TSPOAP1O95153 1857 aa26.43■■□□□ 1.82
SF3A1-204ENST00000447376 KCNH8Q96L42 1107 aa26.43■■□□□ 1.82
SF3A1-204ENST00000447376 ATP1B4Q9UN42 357 aaPredicted RBP26.41■■□□□ 1.82
SF3A1-204ENST00000447376 CLIP1P30622 1438 aa26.39■■□□□ 1.82
SF3A1-204ENST00000447376 HECW1Q76N89 1606 aa26.39■■□□□ 1.81
SF3A1-204ENST00000447376 MAP3K4Q9Y6R4 1608 aa26.36■■□□□ 1.81
SF3A1-204ENST00000447376 PLEKHD1A6NEE1 506 aa26.35■■□□□ 1.81
SF3A1-204ENST00000447376 TEX14Q8IWB6 1497 aa26.35■■□□□ 1.81
SF3A1-204ENST00000447376 CFAP43Q8NDM7 1665 aa26.33■■□□□ 1.81
SF3A1-204ENST00000447376 CDK11AQ9UQ88 783 aaPredicted RBP26.3■■□□□ 1.8
SF3A1-204ENST00000447376 CD109Q6YHK3 1445 aa26.3■■□□□ 1.8
SF3A1-204ENST00000447376 KDM6BO15054 1643 aa26.29■■□□□ 1.8
SF3A1-204ENST00000447376 PPRC1Q5VV67 1664 aaKnown RBP26.25■■□□□ 1.79
SF3A1-204ENST00000447376 CDK13Q14004 1512 aaKnown RBP26.25■■□□□ 1.79
SF3A1-204ENST00000447376 CEP162Q5TB80 1403 aa26.24■■□□□ 1.79
SF3A1-204ENST00000447376 CASKIN1Q8WXD9 1431 aa26.23■■□□□ 1.79
SF3A1-204ENST00000447376 MAGI3Q5TCQ9 1506 aa26.22■■□□□ 1.79
SF3A1-204ENST00000447376 ABCA9Q8IUA7 1624 aa26.21■■□□□ 1.79
SF3A1-204ENST00000447376 PCF11O94913 1555 aaKnown RBP26.21■■□□□ 1.79
SF3A1-204ENST00000447376 CCDC18Q5T9S5 1454 aa26.2■■□□□ 1.78
SF3A1-204ENST00000447376 FYCO1Q9BQS8 1478 aa26.19■■□□□ 1.78
SF3A1-204ENST00000447376 LOC105371045A0A1W2PR82 267 aa26.19■■□□□ 1.78
SF3A1-204ENST00000447376 PHLDB1Q86UU1 1377 aa26.1■■□□□ 1.77
SF3A1-204ENST00000447376 TROQ12816 1431 aaPredicted RBP26.08■■□□□ 1.77
SF3A1-204ENST00000447376 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP26.08■■□□□ 1.77
SF3A1-204ENST00000447376 LRRIQ1Q96JM4 1722 aa26.08■■□□□ 1.76
SF3A1-204ENST00000447376 KIF14Q15058 1648 aa26.07■■□□□ 1.76
SF3A1-204ENST00000447376 NEO1Q92859 1461 aa26.05■■□□□ 1.76
SF3A1-204ENST00000447376 TTC37Q6PGP7 1564 aa26.03■■□□□ 1.76
SF3A1-204ENST00000447376 CFAP74Q9C0B2 1584 aa26.03■■□□□ 1.76
SF3A1-204ENST00000447376 ARAP3Q8WWN8 1544 aa25.99■■□□□ 1.75
SF3A1-204ENST00000447376 COL17A1Q9UMD9 1497 aaPredicted RBP25.99■■□□□ 1.75
SF3A1-204ENST00000447376 FANCAO15360 1455 aa25.98■■□□□ 1.75
SF3A1-204ENST00000447376 MYO5CQ9NQX4 1742 aa25.97■■□□□ 1.75
SF3A1-204ENST00000447376 PLCH2O75038 1416 aa25.96■■□□□ 1.75
SF3A1-204ENST00000447376 VPS8Q8N3P4 1428 aa25.94■■□□□ 1.74
SF3A1-204ENST00000447376 MTUS2Q5JR59 1369 aa25.94■■□□□ 1.74
SF3A1-204ENST00000447376 AKNAQ7Z591 1439 aa25.93■■□□□ 1.74
SF3A1-204ENST00000447376 EFCAB2Q5VUJ9 269 aa25.91■■□□□ 1.74
SF3A1-204ENST00000447376 ARHGAP5Q13017 1502 aa25.88■■□□□ 1.73
SF3A1-204ENST00000447376 DENND4BO75064 1496 aaPredicted RBP25.88■■□□□ 1.73
SF3A1-204ENST00000447376 ADGRL1O94910 1474 aa25.85■■□□□ 1.73
SF3A1-204ENST00000447376 EHBP1L1Q8N3D4 1523 aa25.85■■□□□ 1.73
SF3A1-204ENST00000447376 RAPGEF3O95398 923 aa25.85■■□□□ 1.73
SF3A1-204ENST00000447376 AEBP2Q6ZN18 517 aaPredicted RBP25.83■■□□□ 1.73
SF3A1-204ENST00000447376 PREX2Q70Z35 1606 aa25.81■■□□□ 1.72
Retrieved 100 of 20,778 RNA–protein pairs in 128.6 ms