RNA–Protein interactions for RNA: ENST00000446764.5

GARNL3-209, Transcript of GTPase activating Rap/RanGAP domain like 3, human

TSL 4

Gene GARNL3, Length 523 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
GARNL3-209	ENST00000446764	KIAA0586	Q9BVV6	1533 aa		35.1	■■■■□ 3.21
GARNL3-209	ENST00000446764	SHROOM2	Q13796	1616 aa		35.1	■■■■□ 3.21
GARNL3-209	ENST00000446764	RAPGEF2	Q9Y4G8	1499 aa		35.09	■■■■□ 3.21
GARNL3-209	ENST00000446764	ERCC6L2	Q5T890	1561 aa		35.08	■■■■□ 3.21
GARNL3-209	ENST00000446764	PRG4	Q92954	1404 aa	Predicted RBP	35.05	■■■■□ 3.2
GARNL3-209	ENST00000446764	CSRNP3	Q8WYN3	585 aa		34.96	■■■■□ 3.19
GARNL3-209	ENST00000446764	PRX	Q9BXM0	1461 aa		34.96	■■■■□ 3.19
GARNL3-209	ENST00000446764	EEA1	Q15075	1411 aa		34.91	■■■■□ 3.18
GARNL3-209	ENST00000446764	FAM9A	Q8IZU1	332 aa	Predicted RBP	34.84	■■■■□ 3.17
GARNL3-209	ENST00000446764	IQGAP2	Q13576	1575 aa		34.83	■■■■□ 3.17
GARNL3-209	ENST00000446764	CARMIL2	Q6F5E8	1435 aa		34.72	■■■■□ 3.15
GARNL3-209	ENST00000446764	UGGT2	Q9NYU1	1516 aa		34.67	■■■■□ 3.14
GARNL3-209	ENST00000446764	DISP1	Q96F81	1524 aa		34.65	■■■■□ 3.14
GARNL3-209	ENST00000446764	TNIK	Q9UKE5	1360 aa		34.63	■■■■□ 3.13
GARNL3-209	ENST00000446764	PTPRG	P23470	1445 aa		34.63	■■■■□ 3.13
GARNL3-209	ENST00000446764	TTBK1	Q5TCY1	1321 aa	Predicted RBP	34.58	■■■■□ 3.13
GARNL3-209	ENST00000446764	CTTNBP2	Q8WZ74	1663 aa		34.58	■■■■□ 3.13
GARNL3-209	ENST00000446764	TRH	P20396	242 aa	Predicted RBP	34.57	■■■■□ 3.12
GARNL3-209	ENST00000446764	KIAA0556	O60303	1618 aa		34.5	■■■■□ 3.11
GARNL3-209	ENST00000446764	KIF21B	O75037	1637 aa		34.49	■■■■□ 3.11
GARNL3-209	ENST00000446764	GOLGA3	Q08378	1498 aa		34.47	■■■■□ 3.11
GARNL3-209	ENST00000446764	NPM1	P06748	294 aa	Known RBP eCLIP	34.45	■■■■□ 3.11
GARNL3-209	ENST00000446764	ADCY10	Q96PN6	1610 aa		34.44	■■■■□ 3.1
GARNL3-209	ENST00000446764	EHMT2	Q96KQ7	1210 aa		34.39	■■■■□ 3.1
GARNL3-209	ENST00000446764	UACA	Q9BZF9	1416 aa		34.38	■■■■□ 3.09
GARNL3-209	ENST00000446764	P3H3	Q8IVL6	736 aa		34.34	■■■■□ 3.09
GARNL3-209	ENST00000446764	UHRF1BP1L	A0JNW5	1464 aa		34.33	■■■■□ 3.09
GARNL3-209	ENST00000446764	UBTF	P17480	764 aa	Known RBP	34.32	■■■■□ 3.08
GARNL3-209	ENST00000446764	RANGAP1	P46060	587 aa	Predicted RBP	34.31	■■■■□ 3.08
GARNL3-209	ENST00000446764	ABCC2	Q92887	1545 aa		34.29	■■■■□ 3.08
GARNL3-209	ENST00000446764	MAPKBP1	O60336	1514 aa		34.26	■■■■□ 3.08
GARNL3-209	ENST00000446764	PLB1	Q6P1J6	1458 aa		34.24	■■■■□ 3.07
GARNL3-209	ENST00000446764	SAMD9	Q5K651	1589 aa		34.23	■■■■□ 3.07
GARNL3-209	ENST00000446764	KDM5B	Q9UGL1	1544 aa		34.17	■■■■□ 3.06
GARNL3-209	ENST00000446764	ABCA8	O94911	1581 aa		34.15	■■■■□ 3.06
GARNL3-209	ENST00000446764	ABCC10	Q5T3U5	1492 aa		34.15	■■■■□ 3.06
GARNL3-209	ENST00000446764	FAM69C	Q0P6D2	419 aa		34.13	■■■■□ 3.05
GARNL3-209	ENST00000446764	FHOD3	Q2V2M9	1422 aa		34.12	■■■■□ 3.05
GARNL3-209	ENST00000446764	ASXL2	Q76L83	1435 aa		34.1	■■■■□ 3.05
GARNL3-209	ENST00000446764	EFCAB5	A4FU69	1503 aa		34.09	■■■■□ 3.05
GARNL3-209	ENST00000446764	DIP2B	Q9P265	1576 aa		34.03	■■■■□ 3.04
GARNL3-209	ENST00000446764	ZCCHC11	Q5TAX3	1644 aa	Known RBP	34.02	■■■■□ 3.04
GARNL3-209	ENST00000446764	KIF13A	Q9H1H9	1805 aa		33.99	■■■■□ 3.03
GARNL3-209	ENST00000446764	ARHGAP35	Q9NRY4	1499 aa		33.97	■■■■□ 3.03
GARNL3-209	ENST00000446764	ARID3C	A6NKF2	412 aa		33.96	■■■■□ 3.03
GARNL3-209	ENST00000446764	ATP10B	O94823	1461 aa		33.93	■■■■□ 3.02
GARNL3-209	ENST00000446764	RAPGEF6	Q8TEU7	1601 aa		33.92	■■■■□ 3.02
GARNL3-209	ENST00000446764	WDR7	Q9Y4E6	1490 aa		33.89	■■■■□ 3.02
GARNL3-209	ENST00000446764	EPRS	P07814	1512 aa	Known RBP	33.89	■■■■□ 3.02
GARNL3-209	ENST00000446764	NUP153	P49790	1475 aa	Known RBP	33.87	■■■■□ 3.01
GARNL3-209	ENST00000446764	GLI2	P10070	1586 aa		33.85	■■■■□ 3.01
GARNL3-209	ENST00000446764	FMN1	Q68DA7	1419 aa		33.82	■■■■□ 3
GARNL3-209	ENST00000446764	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	33.8	■■■■□ 3
GARNL3-209	ENST00000446764	HNRNPUL2	Q1KMD3	747 aa	Known RBP	33.8	■■■■□ 3
GARNL3-209	ENST00000446764	KCNH8	Q96L42	1107 aa		33.8	■■■■□ 3
GARNL3-209	ENST00000446764	CLIP1	P30622	1438 aa		33.74	■■■□□ 2.99
GARNL3-209	ENST00000446764	LOC105371045	A0A1W2PR82	267 aa		33.7	■■■□□ 2.99
GARNL3-209	ENST00000446764	ATP1B4	Q9UN42	357 aa	Predicted RBP	33.7	■■■□□ 2.99
GARNL3-209	ENST00000446764	MAP3K4	Q9Y6R4	1608 aa		33.65	■■■□□ 2.98
GARNL3-209	ENST00000446764	PLEKHD1	A6NEE1	506 aa		33.65	■■■□□ 2.98
GARNL3-209	ENST00000446764	TSPOAP1	O95153	1857 aa		33.63	■■■□□ 2.97
GARNL3-209	ENST00000446764	CD109	Q6YHK3	1445 aa		33.62	■■■□□ 2.97
GARNL3-209	ENST00000446764	CDK13	Q14004	1512 aa	Known RBP	33.61	■■■□□ 2.97
GARNL3-209	ENST00000446764	HECW1	Q76N89	1606 aa		33.6	■■■□□ 2.97
GARNL3-209	ENST00000446764	PPRC1	Q5VV67	1664 aa	Known RBP	33.59	■■■□□ 2.97
GARNL3-209	ENST00000446764	CEP162	Q5TB80	1403 aa		33.58	■■■□□ 2.97
GARNL3-209	ENST00000446764	CASKIN1	Q8WXD9	1431 aa		33.56	■■■□□ 2.96
GARNL3-209	ENST00000446764	TEX14	Q8IWB6	1497 aa		33.56	■■■□□ 2.96
GARNL3-209	ENST00000446764	MAGI3	Q5TCQ9	1506 aa		33.53	■■■□□ 2.96
GARNL3-209	ENST00000446764	CFAP43	Q8NDM7	1665 aa		33.52	■■■□□ 2.96
GARNL3-209	ENST00000446764	KDM6B	O15054	1643 aa		33.5	■■■□□ 2.95
GARNL3-209	ENST00000446764	PCF11	O94913	1555 aa	Known RBP	33.49	■■■□□ 2.95
GARNL3-209	ENST00000446764	CDK11A	Q9UQ88	783 aa	Predicted RBP	33.48	■■■□□ 2.95
GARNL3-209	ENST00000446764	ABCA9	Q8IUA7	1624 aa		33.47	■■■□□ 2.95
GARNL3-209	ENST00000446764	FYCO1	Q9BQS8	1478 aa		33.44	■■■□□ 2.94
GARNL3-209	ENST00000446764	COL17A1	Q9UMD9	1497 aa	Predicted RBP	33.43	■■■□□ 2.94
GARNL3-209	ENST00000446764	CCDC18	Q5T9S5	1454 aa		33.39	■■■□□ 2.94
GARNL3-209	ENST00000446764	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	33.37	■■■□□ 2.93
GARNL3-209	ENST00000446764	TRO	Q12816	1431 aa	Predicted RBP	33.36	■■■□□ 2.93
GARNL3-209	ENST00000446764	LRRIQ1	Q96JM4	1722 aa		33.35	■■■□□ 2.93
GARNL3-209	ENST00000446764	PHLDB1	Q86UU1	1377 aa		33.29	■■■□□ 2.92
GARNL3-209	ENST00000446764	TTC37	Q6PGP7	1564 aa		33.28	■■■□□ 2.92
GARNL3-209	ENST00000446764	NEO1	Q92859	1461 aa		33.26	■■■□□ 2.92
GARNL3-209	ENST00000446764	ARAP3	Q8WWN8	1544 aa		33.24	■■■□□ 2.91
GARNL3-209	ENST00000446764	PLCH2	O75038	1416 aa		33.22	■■■□□ 2.91
GARNL3-209	ENST00000446764	KIF14	Q15058	1648 aa		33.21	■■■□□ 2.91
GARNL3-209	ENST00000446764	FANCA	O15360	1455 aa		33.19	■■■□□ 2.9
GARNL3-209	ENST00000446764	VPS8	Q8N3P4	1428 aa		33.18	■■■□□ 2.9
GARNL3-209	ENST00000446764	AKNA	Q7Z591	1439 aa		33.16	■■■□□ 2.9
GARNL3-209	ENST00000446764	RAPGEF3	O95398	923 aa		33.13	■■■□□ 2.89
GARNL3-209	ENST00000446764	EFCAB2	Q5VUJ9	269 aa		33.11	■■■□□ 2.89
GARNL3-209	ENST00000446764	MTUS2	Q5JR59	1369 aa		33.09	■■■□□ 2.89
GARNL3-209	ENST00000446764	CFAP74	Q9C0B2	1584 aa		33.07	■■■□□ 2.88
GARNL3-209	ENST00000446764	DENND4B	O75064	1496 aa	Predicted RBP	33.05	■■■□□ 2.88
GARNL3-209	ENST00000446764	MYO5C	Q9NQX4	1742 aa		33.02	■■■□□ 2.88
GARNL3-209	ENST00000446764	ARHGAP5	Q13017	1502 aa		33.02	■■■□□ 2.88
GARNL3-209	ENST00000446764	ADGRL1	O94910	1474 aa		33.01	■■■□□ 2.88
GARNL3-209	ENST00000446764	SCAPER	Q9BY12	1400 aa		33.01	■■■□□ 2.87
GARNL3-209	ENST00000446764	FRMPD1	Q5SYB0	1578 aa		32.98	■■■□□ 2.87
GARNL3-209	ENST00000446764	EHBP1L1	Q8N3D4	1523 aa		32.97	■■■□□ 2.87

Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms