RNA–Protein interactions for RNA: ENST00000444942.1

LINC00642-203, long intergenic non-protein coding RNA 642, humanhuman

TSL 1 (best)

Gene LINC00642, Length 1,376 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00642-203ENST00000444942 ABCA5Q8WWZ7 1642 aa16.79■□□□□ 0.28
LINC00642-203ENST00000444942 CUX1P39880 1505 aa16.76■□□□□ 0.27
LINC00642-203ENST00000444942 NPM1P06748 294 aaKnown RBP eCLIP16.75■□□□□ 0.27
LINC00642-203ENST00000444942 ADAMTS12P58397 1594 aa16.72■□□□□ 0.27
LINC00642-203ENST00000444942 ADCY10Q96PN6 1610 aa16.71■□□□□ 0.27
LINC00642-203ENST00000444942 SOCS7O14512 581 aa16.71■□□□□ 0.27
LINC00642-203ENST00000444942 PRG4Q92954 1404 aaPredicted RBP16.71■□□□□ 0.27
LINC00642-203ENST00000444942 ABCA10Q8WWZ4 1543 aa16.68■□□□□ 0.26
LINC00642-203ENST00000444942 PPRC1Q5VV67 1664 aaKnown RBP16.66■□□□□ 0.26
LINC00642-203ENST00000444942 SUPT5HO00267 1087 aaKnown RBP16.64■□□□□ 0.25
LINC00642-203ENST00000444942 ILDR2Q71H61 639 aa16.63■□□□□ 0.25
LINC00642-203ENST00000444942 JPH4Q96JJ6 628 aa16.59■□□□□ 0.25
LINC00642-203ENST00000444942 TOP2BQ02880 1626 aa16.59■□□□□ 0.25
LINC00642-203ENST00000444942 FHAD1B1AJZ9 1412 aa16.59■□□□□ 0.25
LINC00642-203ENST00000444942 COL17A1Q9UMD9 1497 aaPredicted RBP16.55■□□□□ 0.24
LINC00642-203ENST00000444942 GLI2P10070 1586 aa16.54■□□□□ 0.24
LINC00642-203ENST00000444942 RUSC2Q8N2Y8 1516 aa16.52■□□□□ 0.24
LINC00642-203ENST00000444942 DISP3Q9P2K9 1392 aa16.52■□□□□ 0.23
LINC00642-203ENST00000444942 ERICH3Q5RHP9 1530 aa16.47■□□□□ 0.23
LINC00642-203ENST00000444942 MAP3K4Q9Y6R4 1608 aa16.44■□□□□ 0.22
LINC00642-203ENST00000444942 PLB1Q6P1J6 1458 aa16.42■□□□□ 0.22
LINC00642-203ENST00000444942 ASXL2Q76L83 1435 aa16.41■□□□□ 0.22
LINC00642-203ENST00000444942 TEX14Q8IWB6 1497 aa16.4■□□□□ 0.22
LINC00642-203ENST00000444942 WRNQ14191 1432 aaPredicted RBP eCLIP16.39■□□□□ 0.21
LINC00642-203ENST00000444942 ABCC2Q92887 1545 aa16.39■□□□□ 0.21
LINC00642-203ENST00000444942 CUL7Q14999 1698 aa16.38■□□□□ 0.21
LINC00642-203ENST00000444942 SPATA31D1Q6ZQQ2 1576 aa16.36■□□□□ 0.21
LINC00642-203ENST00000444942 KIF21BO75037 1637 aa16.35■□□□□ 0.21
LINC00642-203ENST00000444942 PCF11O94913 1555 aaKnown RBP16.33■□□□□ 0.21
LINC00642-203ENST00000444942 EPRSP07814 1512 aaKnown RBP16.33■□□□□ 0.2
LINC00642-203ENST00000444942 PTPRMP28827 1452 aa16.31■□□□□ 0.2
LINC00642-203ENST00000444942 PTPRGP23470 1445 aa16.3■□□□□ 0.2
LINC00642-203ENST00000444942 CERKQ8TCT0 537 aa16.3■□□□□ 0.2
LINC00642-203ENST00000444942 ADAMTSL3P82987 1691 aa16.29■□□□□ 0.2
LINC00642-203ENST00000444942 KIAA0586Q9BVV6 1533 aa16.29■□□□□ 0.2
LINC00642-203ENST00000444942 BIVM-ERCC5R4GMW8 1640 aa16.28■□□□□ 0.2
LINC00642-203ENST00000444942 UHRF1BP1LA0JNW5 1464 aa16.25■□□□□ 0.19
LINC00642-203ENST00000444942 TNIKQ9UKE5 1360 aa16.2■□□□□ 0.18
LINC00642-203ENST00000444942 KDM5BQ9UGL1 1544 aa16.19■□□□□ 0.18
LINC00642-203ENST00000444942 TTBK1Q5TCY1 1321 aaPredicted RBP16.19■□□□□ 0.18
LINC00642-203ENST00000444942 ZCCHC11Q5TAX3 1644 aaKnown RBP16.18■□□□□ 0.18
LINC00642-203ENST00000444942 CFAP43Q8NDM7 1665 aa16.16■□□□□ 0.18
LINC00642-203ENST00000444942 MAGI3Q5TCQ9 1506 aa16.16■□□□□ 0.18
LINC00642-203ENST00000444942 UACAQ9BZF9 1416 aa16.15■□□□□ 0.18
LINC00642-203ENST00000444942 BCORL1Q5H9F3 1711 aa16.15■□□□□ 0.18
LINC00642-203ENST00000444942 MADDQ8WXG6 1647 aa16.14■□□□□ 0.18
LINC00642-203ENST00000444942 CARMIL2Q6F5E8 1435 aa16.14■□□□□ 0.17
LINC00642-203ENST00000444942 HSPA2P54652 639 aa16.11■□□□□ 0.17
LINC00642-203ENST00000444942 WDR7Q9Y4E6 1490 aa16.09■□□□□ 0.17
LINC00642-203ENST00000444942 CD109Q6YHK3 1445 aa16.09■□□□□ 0.17
LINC00642-203ENST00000444942 RIMS1Q86UR5 1692 aaKnown RBP16.07■□□□□ 0.16
LINC00642-203ENST00000444942 ARAP3Q8WWN8 1544 aa16.07■□□□□ 0.16
LINC00642-203ENST00000444942 IQGAP2Q13576 1575 aa16.01■□□□□ 0.15
LINC00642-203ENST00000444942 DISP1Q96F81 1524 aa16■□□□□ 0.15
LINC00642-203ENST00000444942 IGF1RP08069 1367 aa15.97■□□□□ 0.15
LINC00642-203ENST00000444942 ARID4BQ4LE39 1312 aaPredicted RBP15.95■□□□□ 0.14
LINC00642-203ENST00000444942 STRCQ7RTU9 1775 aa15.93■□□□□ 0.14
LINC00642-203ENST00000444942 KCNH8Q96L42 1107 aa15.92■□□□□ 0.14
LINC00642-203ENST00000444942 PHLDB1Q86UU1 1377 aa15.9■□□□□ 0.14
LINC00642-203ENST00000444942 FRMPD1Q5SYB0 1578 aa15.89■□□□□ 0.13
LINC00642-203ENST00000444942 PREX1Q8TCU6 1659 aa15.89■□□□□ 0.13
LINC00642-203ENST00000444942 DMRT2Q9Y5R5 561 aa15.88■□□□□ 0.13
LINC00642-203ENST00000444942 KIAA0556O60303 1618 aa15.88■□□□□ 0.13
LINC00642-203ENST00000444942 YEATS2Q9ULM3 1422 aa15.88■□□□□ 0.13
LINC00642-203ENST00000444942 RAPGEF3O95398 923 aa15.87■□□□□ 0.13
LINC00642-203ENST00000444942 IQSEC2Q5JU85 1478 aa15.87■□□□□ 0.13
LINC00642-203ENST00000444942 UGGT2Q9NYU1 1516 aa15.87■□□□□ 0.13
LINC00642-203ENST00000444942 PLPPR3Q6T4P5 718 aa15.87■□□□□ 0.13
LINC00642-203ENST00000444942 ARHGEF40Q8TER5 1519 aa15.86■□□□□ 0.13
LINC00642-203ENST00000444942 KIF27Q86VH2 1401 aa15.85■□□□□ 0.13
LINC00642-203ENST00000444942 FER1L4A9Z1Z3 1794 aa15.85■□□□□ 0.13
LINC00642-203ENST00000444942 TTC37Q6PGP7 1564 aa15.84■□□□□ 0.13
LINC00642-203ENST00000444942 LTBP4Q8N2S1 1624 aa15.83■□□□□ 0.12
LINC00642-203ENST00000444942 CARMIL1Q5VZK9 1371 aa15.83■□□□□ 0.12
LINC00642-203ENST00000444942 ABCA9Q8IUA7 1624 aa15.82■□□□□ 0.12
LINC00642-203ENST00000444942 NEO1Q92859 1461 aa15.81■□□□□ 0.12
LINC00642-203ENST00000444942 SIGLEC1Q9BZZ2 1709 aa15.8■□□□□ 0.12
LINC00642-203ENST00000444942 ABCA8O94911 1581 aa15.8■□□□□ 0.12
LINC00642-203ENST00000444942 POGZQ7Z3K3 1410 aa15.8■□□□□ 0.12
LINC00642-203ENST00000444942 FANCAO15360 1455 aa15.78■□□□□ 0.12
LINC00642-203ENST00000444942 PTPRTO14522 1441 aa15.78■□□□□ 0.12
LINC00642-203ENST00000444942 RICTORQ6R327 1708 aa15.77■□□□□ 0.12
LINC00642-203ENST00000444942 MED1Q15648 1581 aaPredicted RBP15.76■□□□□ 0.11
LINC00642-203ENST00000444942 SETD1BQ9UPS6 1966 aaKnown RBP15.74■□□□□ 0.11
LINC00642-203ENST00000444942 AKNAQ7Z591 1439 aa15.71■□□□□ 0.1
LINC00642-203ENST00000444942 UHRF1BP1Q6BDS2 1440 aa15.68■□□□□ 0.1
LINC00642-203ENST00000444942 ZMYM4Q5VZL5 1548 aa15.68■□□□□ 0.1
LINC00642-203ENST00000444942 ARHGEF12Q9NZN5 1544 aa15.68■□□□□ 0.1
LINC00642-203ENST00000444942 DENND4BO75064 1496 aaPredicted RBP15.67■□□□□ 0.1
LINC00642-203ENST00000444942 FHOD3Q2V2M9 1422 aa15.66■□□□□ 0.1
LINC00642-203ENST00000444942 EFCAB5A4FU69 1503 aa15.66■□□□□ 0.1
LINC00642-203ENST00000444942 ZFYVE16Q7Z3T8 1539 aa15.66■□□□□ 0.1
LINC00642-203ENST00000444942 UBAP1LF5GYI3 381 aa15.65■□□□□ 0.1
LINC00642-203ENST00000444942 MLECQ14165 292 aa15.65■□□□□ 0.1
LINC00642-203ENST00000444942 ATP10BO94823 1461 aa15.63■□□□□ 0.09
LINC00642-203ENST00000444942 CEBPAP49715 358 aaPredicted RBP15.62■□□□□ 0.09
LINC00642-203ENST00000444942 GOLGA3Q08378 1498 aa15.62■□□□□ 0.09
LINC00642-203ENST00000444942 CTTNBP2Q8WZ74 1663 aa15.62■□□□□ 0.09
LINC00642-203ENST00000444942 MAGI2Q86UL8 1455 aa15.61■□□□□ 0.09
LINC00642-203ENST00000444942 CFAP74Q9C0B2 1584 aa15.6■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms