RNA–Protein interactions for RNA: ENST00000443617.6

HERC1-201, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HERC1, Length 15,137 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-201ENST00000443617 UBE2Q2Q8WVN8 375 aa6.77□□□□□ -1.33
HERC1-201ENST00000443617 MRS2Q9HD23 443 aa6.77□□□□□ -1.33
HERC1-201ENST00000443617 RSPH6AQ9H0K4 717 aa6.77□□□□□ -1.33
HERC1-201ENST00000443617 USP35Q9P2H5 1018 aa6.76□□□□□ -1.33
HERC1-201ENST00000443617 RB1CC1Q8TDY2 1594 aa6.76□□□□□ -1.33
HERC1-201ENST00000443617 GOLGA3Q08378 1498 aa6.75□□□□□ -1.33
HERC1-201ENST00000443617 DDRGK1Q96HY6 314 aa6.75□□□□□ -1.33
HERC1-201ENST00000443617 CNGB1Q14028 1251 aaPredicted RBP6.74□□□□□ -1.33
HERC1-201ENST00000443617 VPS8Q8N3P4 1428 aa6.74□□□□□ -1.33
HERC1-201ENST00000443617 TONSLQ96HA7 1378 aa6.73□□□□□ -1.33
HERC1-201ENST00000443617 CCNB3Q8WWL7 1395 aa6.73□□□□□ -1.33
HERC1-201ENST00000443617 BRPF3Q9ULD4 1205 aa6.73□□□□□ -1.33
HERC1-201ENST00000443617 CCDC88BA6NC98 1476 aa6.72□□□□□ -1.33
HERC1-201ENST00000443617 POLR3GLQ9BT43 218 aa6.72□□□□□ -1.33
HERC1-201ENST00000443617 ABCC9O60706 1549 aa6.71□□□□□ -1.34
HERC1-201ENST00000443617 TCERG1O14776 1098 aaKnown RBP6.71□□□□□ -1.34
HERC1-201ENST00000443617 RAB3GAP2Q9H2M9 1393 aa6.68□□□□□ -1.34
HERC1-201ENST00000443617 SETD5Q9C0A6 1442 aa6.68□□□□□ -1.34
HERC1-201ENST00000443617 CECR2Q9BXF3 1484 aa6.68□□□□□ -1.34
HERC1-201ENST00000443617 C11orf95C9JLR9 678 aaPredicted RBP6.68□□□□□ -1.34
HERC1-201ENST00000443617 EIF4G2P78344 907 aaKnown RBP eCLIP6.67□□□□□ -1.344e-7■■■■■ 27
HERC1-201ENST00000443617 PKNOX2Q96KN3 472 aa6.67□□□□□ -1.34
HERC1-201ENST00000443617 GSE1Q14687 1217 aa6.67□□□□□ -1.34
HERC1-201ENST00000443617 MS4A1P11836 297 aa6.66□□□□□ -1.34
HERC1-201ENST00000443617 CEP164Q9UPV0 1460 aa6.66□□□□□ -1.34
HERC1-201ENST00000443617 ZBED9Q6R2W3 1325 aa6.66□□□□□ -1.34
HERC1-201ENST00000443617 HSPA5P11021 654 aaKnown RBP6.66□□□□□ -1.34
HERC1-201ENST00000443617 PDE4AP27815 886 aa6.66□□□□□ -1.34
HERC1-201ENST00000443617 SCRIBQ14160 1630 aa6.65□□□□□ -1.35
HERC1-201ENST00000443617 WASHC2AQ641Q2 1341 aa6.64□□□□□ -1.35
HERC1-201ENST00000443617 NAP1L5Q96NT1 182 aaPredicted RBP6.64□□□□□ -1.35
HERC1-201ENST00000443617 TMC1Q8TDI8 760 aa6.63□□□□□ -1.35
HERC1-201ENST00000443617 HSP90AA1P07900 732 aaKnown RBP6.63□□□□□ -1.35
HERC1-201ENST00000443617 NUDCQ9Y266 331 aa6.63□□□□□ -1.35
HERC1-201ENST00000443617 VSIG10Q8N0Z9 540 aa6.63□□□□□ -1.35
HERC1-201ENST00000443617 ABCC8Q09428 1581 aa6.62□□□□□ -1.35
HERC1-201ENST00000443617 FRAT1Q92837 279 aaPredicted RBP6.62□□□□□ -1.35
HERC1-201ENST00000443617 L1TD1Q5T7N2 865 aaKnown RBP6.62□□□□□ -1.35
HERC1-201ENST00000443617 FAM43AQ8N2R8 423 aa6.61□□□□□ -1.35
HERC1-201ENST00000443617 SENP3-EIF4A1A0A087X0R7 540 aa6.61□□□□□ -1.35
HERC1-201ENST00000443617 HSP90AA2PQ14568 343 aaPredicted RBP6.6□□□□□ -1.35
HERC1-201ENST00000443617 PNNQ9H307 717 aaKnown RBP6.6□□□□□ -1.35
HERC1-201ENST00000443617 RCAN3Q9UKA8 241 aa6.6□□□□□ -1.35
HERC1-201ENST00000443617 RUSC2Q8N2Y8 1516 aa6.6□□□□□ -1.35
HERC1-201ENST00000443617 BECN1Q14457 450 aa6.6□□□□□ -1.35
HERC1-201ENST00000443617 NFKBIBQ15653 356 aa6.6□□□□□ -1.35
HERC1-201ENST00000443617 MROH2BQ7Z745 1585 aa6.6□□□□□ -1.35
HERC1-201ENST00000443617 PRKRIP1Q9H875 184 aaPredicted RBP6.59□□□□□ -1.35
HERC1-201ENST00000443617 P3H3Q8IVL6 736 aa6.59□□□□□ -1.35
HERC1-201ENST00000443617 ZNF326Q5BKZ1 582 aaKnown RBP6.59□□□□□ -1.35
HERC1-201ENST00000443617 BACH2Q9BYV9 841 aa6.59□□□□□ -1.36
HERC1-201ENST00000443617 SLC4A3P48751 1232 aa6.58□□□□□ -1.36
HERC1-201ENST00000443617 WASHC2CQ9Y4E1 1318 aa6.58□□□□□ -1.36
HERC1-201ENST00000443617 ARXQ96QS3 562 aa6.57□□□□□ -1.36
HERC1-201ENST00000443617 CCDC184Q52MB2 194 aa6.57□□□□□ -1.36
HERC1-201ENST00000443617 BAZ1BQ9UIG0 1483 aaKnown RBP6.57□□□□□ -1.36
HERC1-201ENST00000443617 ZMYND15Q9H091 742 aa6.56□□□□□ -1.36
HERC1-201ENST00000443617 EXOC6Q8TAG9 804 aa6.56□□□□□ -1.36
HERC1-201ENST00000443617 PABPN1Q86U42 306 aaKnown RBP eCLIP6.56□□□□□ -1.36
HERC1-201ENST00000443617 RRP7BPQ9NSQ0 103 aa6.56□□□□□ -1.36
HERC1-201ENST00000443617 RAPGEF2Q9Y4G8 1499 aa6.56□□□□□ -1.36
HERC1-201ENST00000443617 RRBP1Q9P2E9 1410 aaKnown RBP6.56□□□□□ -1.36
HERC1-201ENST00000443617 SMG6Q86US8 1419 aaKnown RBP6.56□□□□□ -1.36
HERC1-201ENST00000443617 RRP9O43818 475 aaKnown RBP6.55□□□□□ -1.36
HERC1-201ENST00000443617 RRP1P56182 461 aaKnown RBP6.55□□□□□ -1.36
HERC1-201ENST00000443617 PDE3BQ13370 1112 aa6.54□□□□□ -1.36
HERC1-201ENST00000443617 FRAT2O75474 233 aaPredicted RBP6.54□□□□□ -1.36
HERC1-201ENST00000443617 GOLGA6L3A6NEY3 463 aa6.53□□□□□ -1.36
HERC1-201ENST00000443617 UPF2Q9HAU5 1272 aaKnown RBP6.53□□□□□ -1.36
HERC1-201ENST00000443617 L3MBTL2Q969R5 705 aa6.53□□□□□ -1.36
HERC1-201ENST00000443617 CHIC2Q9UKJ5 165 aa6.53□□□□□ -1.36
HERC1-201ENST00000443617 KIF21BO75037 1637 aa6.52□□□□□ -1.37
HERC1-201ENST00000443617 ANP32BQ92688 251 aaKnown RBP6.52□□□□□ -1.37
HERC1-201ENST00000443617 RGS3P49796 1198 aa6.52□□□□□ -1.37
HERC1-201ENST00000443617 RALBP1Q15311 655 aa6.52□□□□□ -1.37
HERC1-201ENST00000443617 FAM161AQ3B820 660 aa6.52□□□□□ -1.37
HERC1-201ENST00000443617 PNISRQ8TF01 805 aaKnown RBP6.51□□□□□ -1.37
HERC1-201ENST00000443617 WDR97A6NE52 1622 aa6.5□□□□□ -1.37
HERC1-201ENST00000443617 CUX2O14529 1486 aa6.5□□□□□ -1.37
HERC1-201ENST00000443617 PODXL2Q9NZ53 605 aa6.5□□□□□ -1.37
HERC1-201ENST00000443617 GZF1Q9H116 711 aaPredicted RBP6.5□□□□□ -1.37
HERC1-201ENST00000443617 RNF123Q5XPI4 1314 aa6.5□□□□□ -1.37
HERC1-201ENST00000443617 PLIN1O60240 522 aa6.49□□□□□ -1.37
HERC1-201ENST00000443617 GOLGA6L2Q8N9W4 650 aaPredicted RBP6.49□□□□□ -1.37
HERC1-201ENST00000443617 CCDC7Q96M83 1385 aa6.49□□□□□ -1.37
HERC1-201ENST00000443617 KIF7Q2M1P5 1343 aa6.49□□□□□ -1.37
HERC1-201ENST00000443617 TRIM44Q96DX7 344 aaPredicted RBP6.49□□□□□ -1.37
HERC1-201ENST00000443617 MPHOSPH9Q99550 1183 aa6.48□□□□□ -1.37
HERC1-201ENST00000443617 TNNT2P45379 298 aaPredicted RBP6.48□□□□□ -1.37
HERC1-201ENST00000443617 CANXP27824 592 aaKnown RBP6.48□□□□□ -1.37
HERC1-201ENST00000443617 CRBNQ96SW2 442 aa6.48□□□□□ -1.37
HERC1-201ENST00000443617 AKNAQ7Z591 1439 aa6.48□□□□□ -1.37
HERC1-201ENST00000443617 CENPQQ7L2Z9 268 aaPredicted RBP6.48□□□□□ -1.37
HERC1-201ENST00000443617 FOXD1Q16676 465 aa6.48□□□□□ -1.37
HERC1-201ENST00000443617 KIF27Q86VH2 1401 aa6.48□□□□□ -1.37
HERC1-201ENST00000443617 SLKQ9H2G2 1235 aaPredicted RBP6.47□□□□□ -1.37
HERC1-201ENST00000443617 PHLDB1Q86UU1 1377 aa6.47□□□□□ -1.37
HERC1-201ENST00000443617 DCAF11Q8TEB1 546 aa6.47□□□□□ -1.37
HERC1-201ENST00000443617 SLC4A1APQ9BWU0 796 aaKnown RBP6.47□□□□□ -1.37
HERC1-201ENST00000443617 POGKQ9P215 609 aa6.46□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms