RNA–Protein interactions for RNA: ENST00000440097.5

LIMD1-202, Transcript of LIM domains containing 1, humanhuman

TSL 5 BASIC

Gene LIMD1, Length 2,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-202ENST00000440097 ABCA5Q8WWZ7 1642 aa21.31■■□□□ 1
LIMD1-202ENST00000440097 ERCC6Q03468 1493 aa21.3■■□□□ 1
LIMD1-202ENST00000440097 TARBP1Q13395 1621 aaKnown RBP21.27■□□□□ 0.99
LIMD1-202ENST00000440097 AQRO60306 1485 aaKnown RBP eCLIP21.25■□□□□ 0.992e-6■■■□□ 15.2
LIMD1-202ENST00000440097 ACIN1Q9UKV3 1341 aaKnown RBP21.25■□□□□ 0.99
LIMD1-202ENST00000440097 FHOD3Q2V2M9 1422 aa21.22■□□□□ 0.99
LIMD1-202ENST00000440097 NEUROD1Q13562 356 aa21.2■□□□□ 0.98
LIMD1-202ENST00000440097 FHAD1B1AJZ9 1412 aa21.2■□□□□ 0.98
LIMD1-202ENST00000440097 CTTNBP2Q8WZ74 1663 aa21.19■□□□□ 0.98
LIMD1-202ENST00000440097 WDR62O43379 1518 aa21.15■□□□□ 0.98
LIMD1-202ENST00000440097 IFT140Q96RY7 1462 aa21.14■□□□□ 0.97
LIMD1-202ENST00000440097 EFCAB5A4FU69 1503 aa21.14■□□□□ 0.97
LIMD1-202ENST00000440097 ZNF608Q9ULD9 1512 aaPredicted RBP21.14■□□□□ 0.97
LIMD1-202ENST00000440097 PBRM1Q86U86 1689 aa21.13■□□□□ 0.97
LIMD1-202ENST00000440097 GRIN2BQ13224 1484 aa21.11■□□□□ 0.97
LIMD1-202ENST00000440097 PCF11O94913 1555 aaKnown RBP21.1■□□□□ 0.97
LIMD1-202ENST00000440097 TIAM1Q13009 1591 aa21.09■□□□□ 0.97
LIMD1-202ENST00000440097 ITGAEP38570 1179 aa21.08■□□□□ 0.97
LIMD1-202ENST00000440097 GTF3C3Q9Y5Q9 886 aa21.06■□□□□ 0.96
LIMD1-202ENST00000440097 FMN1Q68DA7 1419 aa21.05■□□□□ 0.96
LIMD1-202ENST00000440097 FBLN2P98095 1184 aa21.05■□□□□ 0.96
LIMD1-202ENST00000440097 ADAMTS12P58397 1594 aa21.03■□□□□ 0.96
LIMD1-202ENST00000440097 LRRC9Q6ZRR7 1453 aa21.03■□□□□ 0.96
LIMD1-202ENST00000440097 CCNB3Q8WWL7 1395 aa21.03■□□□□ 0.96
LIMD1-202ENST00000440097 MAP3K1Q13233 1512 aa21.02■□□□□ 0.96
LIMD1-202ENST00000440097 FYCO1Q9BQS8 1478 aa21.02■□□□□ 0.96
LIMD1-202ENST00000440097 CASKIN1Q8WXD9 1431 aa21.01■□□□□ 0.95
LIMD1-202ENST00000440097 MYT1Q01538 1121 aa21.01■□□□□ 0.95
LIMD1-202ENST00000440097 RRBP1Q9P2E9 1410 aaKnown RBP21■□□□□ 0.95
LIMD1-202ENST00000440097 CENPBP07199 599 aaPredicted RBP21■□□□□ 0.95
LIMD1-202ENST00000440097 THOC2Q8NI27 1593 aaKnown RBP21■□□□□ 0.95
LIMD1-202ENST00000440097 DIEXFQ68CQ4 756 aaKnown RBP20.99■□□□□ 0.95
LIMD1-202ENST00000440097 SNAPC4Q5SXM2 1469 aa20.99■□□□□ 0.95
LIMD1-202ENST00000440097 EIF4G3O43432 1585 aaKnown RBP20.98■□□□□ 0.95
LIMD1-202ENST00000440097 SAMD9Q5K651 1589 aa20.96■□□□□ 0.95
LIMD1-202ENST00000440097 FAM50AQ14320 339 aaKnown RBP20.96■□□□□ 0.95
LIMD1-202ENST00000440097 IQGAP2Q13576 1575 aa20.95■□□□□ 0.94
LIMD1-202ENST00000440097 CHMP7Q8WUX9 453 aaPredicted RBP20.95■□□□□ 0.94
LIMD1-202ENST00000440097 CFAP43Q8NDM7 1665 aa20.95■□□□□ 0.94
LIMD1-202ENST00000440097 PHLDB1Q86UU1 1377 aa20.93■□□□□ 0.94
LIMD1-202ENST00000440097 MTUS2Q5JR59 1369 aa20.92■□□□□ 0.94
LIMD1-202ENST00000440097 ARID3CA6NKF2 412 aa20.88■□□□□ 0.93
LIMD1-202ENST00000440097 GRIN2AQ12879 1464 aa20.87■□□□□ 0.93
LIMD1-202ENST00000440097 MAGI1Q96QZ7 1491 aaPredicted RBP20.84■□□□□ 0.93
LIMD1-202ENST00000440097 KIAA0586Q9BVV6 1533 aa20.83■□□□□ 0.92
LIMD1-202ENST00000440097 SYNJ2O15056 1496 aa20.8■□□□□ 0.92
LIMD1-202ENST00000440097 UGGT2Q9NYU1 1516 aa20.77■□□□□ 0.92
LIMD1-202ENST00000440097 LRRIQ1Q96JM4 1722 aa20.76■□□□□ 0.91
LIMD1-202ENST00000440097 DHX57Q6P158 1386 aaKnown RBP20.76■□□□□ 0.91
LIMD1-202ENST00000440097 HECW1Q76N89 1606 aa20.74■□□□□ 0.91
LIMD1-202ENST00000440097 CCDC18Q5T9S5 1454 aa20.74■□□□□ 0.91
LIMD1-202ENST00000440097 RAB3GAP2Q9H2M9 1393 aa20.72■□□□□ 0.91
LIMD1-202ENST00000440097 NCOA2Q15596 1464 aa20.71■□□□□ 0.91
LIMD1-202ENST00000440097 FGD6Q6ZV73 1430 aa20.71■□□□□ 0.91
LIMD1-202ENST00000440097 DISP1Q96F81 1524 aa20.71■□□□□ 0.91
LIMD1-202ENST00000440097 KIAA0556O60303 1618 aa20.71■□□□□ 0.91
LIMD1-202ENST00000440097 CEP170Q5SW79 1584 aa20.71■□□□□ 0.91
LIMD1-202ENST00000440097 EPRSP07814 1512 aaKnown RBP20.7■□□□□ 0.9
LIMD1-202ENST00000440097 EHBP1L1Q8N3D4 1523 aa20.69■□□□□ 0.9
LIMD1-202ENST00000440097 CDK13Q14004 1512 aaKnown RBP20.69■□□□□ 0.9
LIMD1-202ENST00000440097 JPH4Q96JJ6 628 aa20.68■□□□□ 0.9
LIMD1-202ENST00000440097 SETD5Q9C0A6 1442 aa20.68■□□□□ 0.9
LIMD1-202ENST00000440097 SUPT6HQ7KZ85 1726 aaKnown RBP20.67■□□□□ 0.9
LIMD1-202ENST00000440097 CLSPNQ9HAW4 1339 aa20.67■□□□□ 0.9
LIMD1-202ENST00000440097 MYOM3Q5VTT5 1437 aa20.65■□□□□ 0.9
LIMD1-202ENST00000440097 MAGI3Q5TCQ9 1506 aa20.65■□□□□ 0.9
LIMD1-202ENST00000440097 ZNF316A6NFI3 1004 aaPredicted RBP20.64■□□□□ 0.9
LIMD1-202ENST00000440097 CARMIL2Q6F5E8 1435 aa20.63■□□□□ 0.89
LIMD1-202ENST00000440097 YTHDC1Q96MU7 727 aaKnown RBP20.63■□□□□ 0.89
LIMD1-202ENST00000440097 NUP160Q12769 1436 aa20.62■□□□□ 0.89
LIMD1-202ENST00000440097 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.62■□□□□ 0.89
LIMD1-202ENST00000440097 CDK11AQ9UQ88 783 aaPredicted RBP20.6■□□□□ 0.89
LIMD1-202ENST00000440097 RAPGEF6Q8TEU7 1601 aa20.57■□□□□ 0.88
LIMD1-202ENST00000440097 NUP153P49790 1475 aaKnown RBP20.56■□□□□ 0.88
LIMD1-202ENST00000440097 PLB1Q6P1J6 1458 aa20.56■□□□□ 0.88
LIMD1-202ENST00000440097 CHIC2Q9UKJ5 165 aa20.53■□□□□ 0.88
LIMD1-202ENST00000440097 PTPN23Q9H3S7 1636 aa20.53■□□□□ 0.88
LIMD1-202ENST00000440097 ARHGEF11O15085 1522 aa20.51■□□□□ 0.87
LIMD1-202ENST00000440097 PTPRKQ15262 1439 aa20.51■□□□□ 0.87
LIMD1-202ENST00000440097 MIER1Q8N108 512 aa20.48■□□□□ 0.87
LIMD1-202ENST00000440097 RRP7BPQ9NSQ0 103 aa20.48■□□□□ 0.87
LIMD1-202ENST00000440097 PRG4Q92954 1404 aaPredicted RBP20.47■□□□□ 0.87
LIMD1-202ENST00000440097 MAPKBP1O60336 1514 aa20.45■□□□□ 0.86
LIMD1-202ENST00000440097 CHD1O14646 1710 aa20.45■□□□□ 0.86
LIMD1-202ENST00000440097 HFM1A2PYH4 1435 aa20.44■□□□□ 0.86
LIMD1-202ENST00000440097 SIN3AQ96ST3 1273 aa20.44■□□□□ 0.86
LIMD1-202ENST00000440097 MIA2Q96PC5 1412 aa20.44■□□□□ 0.86
LIMD1-202ENST00000440097 PLEKHD1A6NEE1 506 aa20.41■□□□□ 0.86
LIMD1-202ENST00000440097 PTPRGP23470 1445 aa20.41■□□□□ 0.86
LIMD1-202ENST00000440097 TROQ12816 1431 aaPredicted RBP20.41■□□□□ 0.86
LIMD1-202ENST00000440097 ZNF777Q9ULD5 760 aaPredicted RBP20.41■□□□□ 0.86
LIMD1-202ENST00000440097 ZNF644Q9H582 1327 aaPredicted RBP20.4■□□□□ 0.86
LIMD1-202ENST00000440097 NAIPQ13075 1403 aa20.4■□□□□ 0.86
LIMD1-202ENST00000440097 TCOF1Q13428 1488 aaKnown RBP20.4■□□□□ 0.86
LIMD1-202ENST00000440097 CFDP1Q9UEE9 299 aaPredicted RBP20.4■□□□□ 0.86
LIMD1-202ENST00000440097 TRIM52Q96A61 297 aa20.37■□□□□ 0.85
LIMD1-202ENST00000440097 ABCA8O94911 1581 aa20.33■□□□□ 0.85
LIMD1-202ENST00000440097 UACAQ9BZF9 1416 aa20.33■□□□□ 0.85
LIMD1-202ENST00000440097 ATP10BO94823 1461 aa20.32■□□□□ 0.84
LIMD1-202ENST00000440097 KIF14Q15058 1648 aa20.31■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms