RNA–Protein interactions for RNA: ENST00000439886.5

SMPD4-209, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 2

Gene SMPD4, Length 3,371 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-209ENST00000439886 SENP3-EIF4A1A0A087X0R7 540 aa16.23■□□□□ 0.19
SMPD4-209ENST00000439886 P3H3Q8IVL6 736 aa16.22■□□□□ 0.19
SMPD4-209ENST00000439886 RTN4Q9NQC3 1192 aaKnown RBP16.21■□□□□ 0.19
SMPD4-209ENST00000439886 B4GALNT3Q6L9W6 998 aa16.2■□□□□ 0.18
SMPD4-209ENST00000439886 UNC13AQ9UPW8 1703 aa16.18■□□□□ 0.18
SMPD4-209ENST00000439886 FAM9BQ8IZU0 186 aa16.18■□□□□ 0.18
SMPD4-209ENST00000439886 RAB3GAP2Q9H2M9 1393 aa16.17■□□□□ 0.18
SMPD4-209ENST00000439886 CCNB3Q8WWL7 1395 aa16.16■□□□□ 0.18
SMPD4-209ENST00000439886 RTL5Q5HYW3 569 aaPredicted RBP16.15■□□□□ 0.18
SMPD4-209ENST00000439886 POLR3GLQ9BT43 218 aa16.15■□□□□ 0.18
SMPD4-209ENST00000439886 TOP2AP11388 1531 aaKnown RBP16.14■□□□□ 0.17
SMPD4-209ENST00000439886 SMARCA2P51531 1590 aa16.13■□□□□ 0.17
SMPD4-209ENST00000439886 EIF4G1Q04637 1599 aaKnown RBP16.1■□□□□ 0.17
SMPD4-209ENST00000439886 PPP1R15AO75807 674 aaPredicted RBP16.1■□□□□ 0.17
SMPD4-209ENST00000439886 BICRAQ9NZM4 1560 aa16.1■□□□□ 0.17
SMPD4-209ENST00000439886 KIF21BO75037 1637 aa16.09■□□□□ 0.17
SMPD4-209ENST00000439886 NPM2Q86SE8 214 aaKnown RBP16.09■□□□□ 0.17
SMPD4-209ENST00000439886 CCER2I3L3R5 266 aa16.08■□□□□ 0.17
SMPD4-209ENST00000439886 TONSLQ96HA7 1378 aa16.08■□□□□ 0.16
SMPD4-209ENST00000439886 FANCIQ9NVI1 1328 aa16.07■□□□□ 0.16
SMPD4-209ENST00000439886 MYT1LQ9UL68 1186 aa16.06■□□□□ 0.16
SMPD4-209ENST00000439886 ERICH6BQ5W0A0 696 aa16.06■□□□□ 0.16
SMPD4-209ENST00000439886 PPP4R2Q9NY27 417 aa16.04■□□□□ 0.16
SMPD4-209ENST00000439886 NOP58Q9Y2X3 529 aaKnown RBP16.04■□□□□ 0.16
SMPD4-209ENST00000439886 BAZ1BQ9UIG0 1483 aaKnown RBP16.03■□□□□ 0.16
SMPD4-209ENST00000439886 WDR97A6NE52 1622 aa16.01■□□□□ 0.15
SMPD4-209ENST00000439886 PAK3O75914 559 aaPredicted RBP16■□□□□ 0.15
SMPD4-209ENST00000439886 ANP32AP39687 249 aaKnown RBP16■□□□□ 0.15
SMPD4-209ENST00000439886 MRS2Q9HD23 443 aa16■□□□□ 0.15
SMPD4-209ENST00000439886 SETD5Q9C0A6 1442 aa15.99■□□□□ 0.15
SMPD4-209ENST00000439886 SYNJ1O43426 1573 aa15.98■□□□□ 0.15
SMPD4-209ENST00000439886 ZBTB47Q9UFB7 747 aaPredicted RBP15.97■□□□□ 0.15
SMPD4-209ENST00000439886 SMARCA4P51532 1647 aa15.96■□□□□ 0.15
SMPD4-209ENST00000439886 IL27Q8NEV9 243 aa15.95■□□□□ 0.14
SMPD4-209ENST00000439886 ARAP1Q96P48 1450 aa15.93■□□□□ 0.14
SMPD4-209ENST00000439886 LAS1LQ9Y4W2 734 aaKnown RBP15.93■□□□□ 0.14
SMPD4-209ENST00000439886 CCDC184Q52MB2 194 aa15.92■□□□□ 0.14
SMPD4-209ENST00000439886 RRBP1Q9P2E9 1410 aaKnown RBP15.9■□□□□ 0.14
SMPD4-209ENST00000439886 CHIC2Q9UKJ5 165 aa15.9■□□□□ 0.14
SMPD4-209ENST00000439886 HSPA5P11021 654 aaKnown RBP15.86■□□□□ 0.13
SMPD4-209ENST00000439886 ZNF326Q5BKZ1 582 aaKnown RBP15.86■□□□□ 0.13
SMPD4-209ENST00000439886 A0A0U1RQG5 324 aaPredicted RBP15.84■□□□□ 0.13
SMPD4-209ENST00000439886 MAPKBP1O60336 1514 aa15.83■□□□□ 0.13
SMPD4-209ENST00000439886 RRP7BPQ9NSQ0 103 aa15.83■□□□□ 0.13
SMPD4-209ENST00000439886 EIF4G2P78344 907 aaKnown RBP eCLIP15.81■□□□□ 0.12
SMPD4-209ENST00000439886 PHLDB1Q86UU1 1377 aa15.81■□□□□ 0.12
SMPD4-209ENST00000439886 ARID3CA6NKF2 412 aa15.8■□□□□ 0.12
SMPD4-209ENST00000439886 NEFMP07197 916 aa15.8■□□□□ 0.12
SMPD4-209ENST00000439886 GLIPR1L2Q4G1C9 344 aa15.8■□□□□ 0.12
SMPD4-209ENST00000439886 TIMELESSQ9UNS1 1208 aa15.79■□□□□ 0.12
SMPD4-209ENST00000439886 IPO9Q96P70 1041 aaKnown RBP15.78■□□□□ 0.12
SMPD4-209ENST00000439886 FOXD1Q16676 465 aa15.78■□□□□ 0.12
SMPD4-209ENST00000439886 KIF27Q86VH2 1401 aa15.76■□□□□ 0.11
SMPD4-209ENST00000439886 VSIG10Q8N0Z9 540 aa15.76■□□□□ 0.11
SMPD4-209ENST00000439886 WASHC2AQ641Q2 1341 aa15.76■□□□□ 0.11
SMPD4-209ENST00000439886 ARHGAP35Q9NRY4 1499 aa15.73■□□□□ 0.11
SMPD4-209ENST00000439886 PRKRIP1Q9H875 184 aaPredicted RBP15.71■□□□□ 0.11
SMPD4-209ENST00000439886 ZMYND15Q9H091 742 aa15.7■□□□□ 0.1
SMPD4-209ENST00000439886 PRXQ9BXM0 1461 aa15.68■□□□□ 0.1
SMPD4-209ENST00000439886 AKNAQ7Z591 1439 aa15.68■□□□□ 0.1
SMPD4-209ENST00000439886 CUX2O14529 1486 aa15.66■□□□□ 0.1
SMPD4-209ENST00000439886 TMC1Q8TDI8 760 aa15.66■□□□□ 0.1
SMPD4-209ENST00000439886 MTUS2Q5JR59 1369 aa15.66■□□□□ 0.1
SMPD4-209ENST00000439886 C11orf95C9JLR9 678 aaPredicted RBP15.66■□□□□ 0.1
SMPD4-209ENST00000439886 ZBED9Q6R2W3 1325 aa15.65■□□□□ 0.1
SMPD4-209ENST00000439886 PDE4CQ08493 712 aa15.64■□□□□ 0.09
SMPD4-209ENST00000439886 L3MBTL2Q969R5 705 aa15.64■□□□□ 0.09
SMPD4-209ENST00000439886 SLC4A3P48751 1232 aa15.62■□□□□ 0.09
SMPD4-209ENST00000439886 LRRC9Q6ZRR7 1453 aa15.62■□□□□ 0.09
SMPD4-209ENST00000439886 AEBP2Q6ZN18 517 aaPredicted RBP15.6■□□□□ 0.09
SMPD4-209ENST00000439886 BRPF3Q9ULD4 1205 aa15.6■□□□□ 0.09
SMPD4-209ENST00000439886 CARMIL1Q5VZK9 1371 aa15.6■□□□□ 0.09
SMPD4-209ENST00000439886 NUDCQ9Y266 331 aa15.6■□□□□ 0.09
SMPD4-209ENST00000439886 FHOD3Q2V2M9 1422 aa15.6■□□□□ 0.09
SMPD4-209ENST00000439886 ARXQ96QS3 562 aa15.59■□□□□ 0.09
SMPD4-209ENST00000439886 CCDC18Q5T9S5 1454 aa15.59■□□□□ 0.09
SMPD4-209ENST00000439886 ATAD2BQ9ULI0 1458 aa15.59■□□□□ 0.09
SMPD4-209ENST00000439886 SKAP1Q86WV1 359 aa15.58■□□□□ 0.09
SMPD4-209ENST00000439886 EXOC6Q8TAG9 804 aa15.58■□□□□ 0.08
SMPD4-209ENST00000439886 ERICH3Q5RHP9 1530 aa15.58■□□□□ 0.08
SMPD4-209ENST00000439886 PDE4AP27815 886 aa15.55■□□□□ 0.08
SMPD4-209ENST00000439886 TIAM1Q13009 1591 aa15.54■□□□□ 0.08
SMPD4-209ENST00000439886 TOP2BQ02880 1626 aa15.53■□□□□ 0.08
SMPD4-209ENST00000439886 FHAD1B1AJZ9 1412 aa15.53■□□□□ 0.08
SMPD4-209ENST00000439886 CNTLNQ9NXG0 1405 aa15.53■□□□□ 0.08
SMPD4-209ENST00000439886 DNAJC5BQ9UF47 199 aa15.53■□□□□ 0.08
SMPD4-209ENST00000439886 CC2D2AQ9P2K1 1620 aa15.52■□□□□ 0.08
SMPD4-209ENST00000439886 PPM1GO15355 546 aaPredicted RBP15.52■□□□□ 0.07
SMPD4-209ENST00000439886 CCDC7Q96M83 1385 aa15.51■□□□□ 0.07
SMPD4-209ENST00000439886 PLIN1O60240 522 aa15.51■□□□□ 0.07
SMPD4-209ENST00000439886 PDIA4P13667 645 aaKnown RBP15.51■□□□□ 0.07
SMPD4-209ENST00000439886 MPHOSPH9Q99550 1183 aa15.51■□□□□ 0.07
SMPD4-209ENST00000439886 IGF1RP08069 1367 aa15.51■□□□□ 0.07
SMPD4-209ENST00000439886 KIF7Q2M1P5 1343 aa15.5■□□□□ 0.07
SMPD4-209ENST00000439886 SLC4A1APQ9BWU0 796 aaKnown RBP15.5■□□□□ 0.07
SMPD4-209ENST00000439886 KDM2AQ9Y2K7 1162 aa15.49■□□□□ 0.07
SMPD4-209ENST00000439886 NBPF8Q3BBV2 869 aa15.48■□□□□ 0.07
SMPD4-209ENST00000439886 UACAQ9BZF9 1416 aa15.48■□□□□ 0.07
SMPD4-209ENST00000439886 BCL11BQ9C0K0 894 aaPredicted RBP15.46■□□□□ 0.07
SMPD4-209ENST00000439886 TCERG1O14776 1098 aaKnown RBP15.45■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms