RNA–Protein interactions for RNA: ENST00000439374.6

CDC42SE1-202, Transcript of CDC42 small effector 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CDC42SE1, Length 3,498 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42SE1-202ENST00000439374 NBR1Q14596 966 aa14.05□□□□□ -0.16
CDC42SE1-202ENST00000439374 DHX57Q6P158 1386 aaKnown RBP14.05□□□□□ -0.16
CDC42SE1-202ENST00000439374 POLR3GLQ9BT43 218 aa14.03□□□□□ -0.16
CDC42SE1-202ENST00000439374 FBLN2P98095 1184 aa14.03□□□□□ -0.16
CDC42SE1-202ENST00000439374 CUX1P39880 1505 aa14.03□□□□□ -0.16
CDC42SE1-202ENST00000439374 IGF1RP08069 1367 aa14.02□□□□□ -0.16
CDC42SE1-202ENST00000439374 TDRD9Q8NDG6 1382 aaKnown RBP14.02□□□□□ -0.17
CDC42SE1-202ENST00000439374 RRP7BPQ9NSQ0 103 aa14.01□□□□□ -0.17
CDC42SE1-202ENST00000439374 CADPSQ9ULU8 1353 aa14□□□□□ -0.17
CDC42SE1-202ENST00000439374 RAB3GAP2Q9H2M9 1393 aa14□□□□□ -0.17
CDC42SE1-202ENST00000439374 NCAPD3P42695 1498 aa13.99□□□□□ -0.17
CDC42SE1-202ENST00000439374 FHOD3Q2V2M9 1422 aa13.98□□□□□ -0.17
CDC42SE1-202ENST00000439374 RAD54L2Q9Y4B4 1467 aa13.98□□□□□ -0.17
CDC42SE1-202ENST00000439374 PRXQ9BXM0 1461 aa13.97□□□□□ -0.17
CDC42SE1-202ENST00000439374 TOP2BQ02880 1626 aa13.96□□□□□ -0.17
CDC42SE1-202ENST00000439374 PEG3Q9GZU2 1588 aa13.95□□□□□ -0.18
CDC42SE1-202ENST00000439374 HNRNPUQ00839 825 aaKnown RBP eCLIP13.95□□□□□ -0.18
CDC42SE1-202ENST00000439374 MTUS2Q5JR59 1369 aa13.95□□□□□ -0.18
CDC42SE1-202ENST00000439374 ARHGAP35Q9NRY4 1499 aa13.94□□□□□ -0.18
CDC42SE1-202ENST00000439374 CC2D2AQ9P2K1 1620 aa13.94□□□□□ -0.18
CDC42SE1-202ENST00000439374 RTN4Q9NQC3 1192 aaKnown RBP13.94□□□□□ -0.18
CDC42SE1-202ENST00000439374 FGD5Q6ZNL6 1462 aa13.93□□□□□ -0.18
CDC42SE1-202ENST00000439374 ZNF326Q5BKZ1 582 aaKnown RBP13.93□□□□□ -0.18
CDC42SE1-202ENST00000439374 NESP48681 1621 aa13.93□□□□□ -0.18
CDC42SE1-202ENST00000439374 CFTRP13569 1480 aa13.92□□□□□ -0.18
CDC42SE1-202ENST00000439374 ZNF777Q9ULD5 760 aaPredicted RBP13.91□□□□□ -0.18
CDC42SE1-202ENST00000439374 PHLDB1Q86UU1 1377 aa13.9□□□□□ -0.18
CDC42SE1-202ENST00000439374 ANP32CO43423 234 aa13.9□□□□□ -0.18
CDC42SE1-202ENST00000439374 FOXD1Q16676 465 aa13.9□□□□□ -0.18
CDC42SE1-202ENST00000439374 MSH5O43196 834 aa13.88□□□□□ -0.19
CDC42SE1-202ENST00000439374 CDK11AQ9UQ88 783 aaPredicted RBP13.88□□□□□ -0.19
CDC42SE1-202ENST00000439374 TONSLQ96HA7 1378 aa13.87□□□□□ -0.19
CDC42SE1-202ENST00000439374 FANCD2Q9BXW9 1451 aa13.87□□□□□ -0.19
CDC42SE1-202ENST00000439374 SETD5Q9C0A6 1442 aa13.85□□□□□ -0.19
CDC42SE1-202ENST00000439374 B4GALNT3Q6L9W6 998 aa13.84□□□□□ -0.19
CDC42SE1-202ENST00000439374 FAM9BQ8IZU0 186 aa13.84□□□□□ -0.19
CDC42SE1-202ENST00000439374 CLSPNQ9HAW4 1339 aa13.83□□□□□ -0.2
CDC42SE1-202ENST00000439374 NPM2Q86SE8 214 aaKnown RBP13.82□□□□□ -0.2
CDC42SE1-202ENST00000439374 CCDC136Q96JN2 1154 aa13.81□□□□□ -0.2
CDC42SE1-202ENST00000439374 ERICH3Q5RHP9 1530 aa13.8□□□□□ -0.2
CDC42SE1-202ENST00000439374 FHAD1B1AJZ9 1412 aa13.78□□□□□ -0.2
CDC42SE1-202ENST00000439374 DEKP35659 375 aaKnown RBP13.78□□□□□ -0.2
CDC42SE1-202ENST00000439374 HMGXB3Q12766 1538 aa13.77□□□□□ -0.2
CDC42SE1-202ENST00000439374 RRBP1Q9P2E9 1410 aaKnown RBP13.77□□□□□ -0.2
CDC42SE1-202ENST00000439374 PPP1R15AO75807 674 aaPredicted RBP13.76□□□□□ -0.21
CDC42SE1-202ENST00000439374 LRRC9Q6ZRR7 1453 aa13.75□□□□□ -0.21
CDC42SE1-202ENST00000439374 SALL2Q9Y467 1007 aaPredicted RBP13.75□□□□□ -0.21
CDC42SE1-202ENST00000439374 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.74□□□□□ -0.21
CDC42SE1-202ENST00000439374 BIVM-ERCC5R4GMW8 1640 aa13.73□□□□□ -0.21
CDC42SE1-202ENST00000439374 ANO8Q9HCE9 1232 aaPredicted RBP13.71□□□□□ -0.21
CDC42SE1-202ENST00000439374 POLA1P09884 1462 aaPredicted RBP13.7□□□□□ -0.22
CDC42SE1-202ENST00000439374 CHMP7Q8WUX9 453 aaPredicted RBP13.69□□□□□ -0.22
CDC42SE1-202ENST00000439374 SLC4A1APQ9BWU0 796 aaKnown RBP13.69□□□□□ -0.22
CDC42SE1-202ENST00000439374 ZNF644Q9H582 1327 aaPredicted RBP13.68□□□□□ -0.22
CDC42SE1-202ENST00000439374 KDM2AQ9Y2K7 1162 aa13.67□□□□□ -0.22
CDC42SE1-202ENST00000439374 AQRO60306 1485 aaKnown RBP eCLIP13.67□□□□□ -0.221e-6■■□□□ 12.2
CDC42SE1-202ENST00000439374 RTL5Q5HYW3 569 aaPredicted RBP13.66□□□□□ -0.22
CDC42SE1-202ENST00000439374 TOPBP1Q92547 1522 aa13.66□□□□□ -0.22
CDC42SE1-202ENST00000439374 HSPA5P11021 654 aaKnown RBP13.65□□□□□ -0.22
CDC42SE1-202ENST00000439374 TIAM1Q13009 1591 aa13.65□□□□□ -0.22
CDC42SE1-202ENST00000439374 LAS1LQ9Y4W2 734 aaKnown RBP13.65□□□□□ -0.23
CDC42SE1-202ENST00000439374 PAK3O75914 559 aaPredicted RBP13.64□□□□□ -0.23
CDC42SE1-202ENST00000439374 WDR97A6NE52 1622 aa13.64□□□□□ -0.23
CDC42SE1-202ENST00000439374 PRKCSHP14314 528 aaPredicted RBP13.63□□□□□ -0.23
CDC42SE1-202ENST00000439374 FMN1Q68DA7 1419 aa13.63□□□□□ -0.23
CDC42SE1-202ENST00000439374 CCDC184Q52MB2 194 aa13.62□□□□□ -0.23
CDC42SE1-202ENST00000439374 EIF5BO60841 1220 aaKnown RBP13.62□□□□□ -0.23
CDC42SE1-202ENST00000439374 L3MBTL2Q969R5 705 aa13.62□□□□□ -0.23
CDC42SE1-202ENST00000439374 GAPVD1Q14C86 1478 aa13.62□□□□□ -0.23
CDC42SE1-202ENST00000439374 EIF4G2P78344 907 aaKnown RBP eCLIP13.62□□□□□ -0.23
CDC42SE1-202ENST00000439374 MPHOSPH9Q99550 1183 aa13.62□□□□□ -0.23
CDC42SE1-202ENST00000439374 PDS5BQ9NTI5 1447 aa13.61□□□□□ -0.23
CDC42SE1-202ENST00000439374 FGD6Q6ZV73 1430 aa13.61□□□□□ -0.23
CDC42SE1-202ENST00000439374 PCF11O94913 1555 aaKnown RBP13.61□□□□□ -0.23
CDC42SE1-202ENST00000439374 MRS2Q9HD23 443 aa13.6□□□□□ -0.23
CDC42SE1-202ENST00000439374 CFDP1Q9UEE9 299 aaPredicted RBP13.6□□□□□ -0.23
CDC42SE1-202ENST00000439374 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.6□□□□□ -0.234e-8■■□□□ 14.5
CDC42SE1-202ENST00000439374 MYT1LQ9UL68 1186 aa13.59□□□□□ -0.23
CDC42SE1-202ENST00000439374 CCDC18Q5T9S5 1454 aa13.58□□□□□ -0.24
CDC42SE1-202ENST00000439374 MAPKBP1O60336 1514 aa13.56□□□□□ -0.24
CDC42SE1-202ENST00000439374 PTPRKQ15262 1439 aa13.56□□□□□ -0.24
CDC42SE1-202ENST00000439374 CASKIN1Q8WXD9 1431 aa13.56□□□□□ -0.24
CDC42SE1-202ENST00000439374 IL27Q8NEV9 243 aa13.56□□□□□ -0.24
CDC42SE1-202ENST00000439374 RGL3Q3MIN7 710 aa13.55□□□□□ -0.24
CDC42SE1-202ENST00000439374 URB2Q14146 1524 aaKnown RBP13.55□□□□□ -0.24
CDC42SE1-202ENST00000439374 NCOA2Q15596 1464 aa13.54□□□□□ -0.24
CDC42SE1-202ENST00000439374 NOP58Q9Y2X3 529 aaKnown RBP13.54□□□□□ -0.24
CDC42SE1-202ENST00000439374 ARXQ96QS3 562 aa13.52□□□□□ -0.25
CDC42SE1-202ENST00000439374 ABCA10Q8WWZ4 1543 aa13.52□□□□□ -0.25
CDC42SE1-202ENST00000439374 ANP32AP39687 249 aaKnown RBP13.51□□□□□ -0.25
CDC42SE1-202ENST00000439374 TIMELESSQ9UNS1 1208 aa13.51□□□□□ -0.25
CDC42SE1-202ENST00000439374 DNMBPQ6XZF7 1577 aa13.51□□□□□ -0.25
CDC42SE1-202ENST00000439374 ZBTB47Q9UFB7 747 aaPredicted RBP13.5□□□□□ -0.25
CDC42SE1-202ENST00000439374 MYOM3Q5VTT5 1437 aa13.5□□□□□ -0.25
CDC42SE1-202ENST00000439374 FYCO1Q9BQS8 1478 aa13.49□□□□□ -0.25
CDC42SE1-202ENST00000439374 PKD2Q13563 968 aa13.49□□□□□ -0.25
CDC42SE1-202ENST00000439374 ERCC6Q03468 1493 aa13.49□□□□□ -0.25
CDC42SE1-202ENST00000439374 PPP4R2Q9NY27 417 aa13.48□□□□□ -0.25
CDC42SE1-202ENST00000439374 WASHC2AQ641Q2 1341 aa13.48□□□□□ -0.25
CDC42SE1-202ENST00000439374 PLEKHD1A6NEE1 506 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 90.5 ms