RNA–Protein interactions for RNA: ENST00000438647.3

RAPGEF1-206, Transcript of Rap guanine nucleotide exchange factor 1, humanhuman

TSL 3

Gene RAPGEF1, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF1-206ENST00000438647 ERCC6L2Q5T890 1561 aa41.88■■■■■ 4.3
RAPGEF1-206ENST00000438647 KIAA0586Q9BVV6 1533 aa41.88■■■■■ 4.29
RAPGEF1-206ENST00000438647 PRG4Q92954 1404 aaPredicted RBP41.84■■■■■ 4.29
RAPGEF1-206ENST00000438647 RAPGEF2Q9Y4G8 1499 aa41.78■■■■■ 4.28
RAPGEF1-206ENST00000438647 IQGAP2Q13576 1575 aa41.59■■■■■ 4.25
RAPGEF1-206ENST00000438647 PRXQ9BXM0 1461 aa41.54■■■■■ 4.24
RAPGEF1-206ENST00000438647 EEA1Q15075 1411 aa41.51■■■■■ 4.24
RAPGEF1-206ENST00000438647 TRHP20396 242 aaPredicted RBP41.5■■■■■ 4.23
RAPGEF1-206ENST00000438647 CARMIL2Q6F5E8 1435 aa41.48■■■■■ 4.23
RAPGEF1-206ENST00000438647 CSRNP3Q8WYN3 585 aa41.46■■■■■ 4.23
RAPGEF1-206ENST00000438647 CHIC1Q5VXU3 224 aa41.42■■■■■ 4.22
RAPGEF1-206ENST00000438647 UGGT2Q9NYU1 1516 aa41.36■■■■■ 4.21
RAPGEF1-206ENST00000438647 CTTNBP2Q8WZ74 1663 aa41.34■■■■■ 4.21
RAPGEF1-206ENST00000438647 TNIKQ9UKE5 1360 aa41.34■■■■■ 4.21
RAPGEF1-206ENST00000438647 PTPRGP23470 1445 aa41.33■■■■■ 4.21
RAPGEF1-206ENST00000438647 DISP1Q96F81 1524 aa41.29■■■■■ 4.2
RAPGEF1-206ENST00000438647 NPM1P06748 294 aaKnown RBP eCLIP41.24■■■■■ 4.19
RAPGEF1-206ENST00000438647 FAM9AQ8IZU1 332 aaPredicted RBP41.21■■■■■ 4.19
RAPGEF1-206ENST00000438647 ADCY10Q96PN6 1610 aa41.21■■■■■ 4.19
RAPGEF1-206ENST00000438647 TTBK1Q5TCY1 1321 aaPredicted RBP41.19■■■■■ 4.19
RAPGEF1-206ENST00000438647 KIAA0556O60303 1618 aa41.18■■■■■ 4.18
RAPGEF1-206ENST00000438647 GOLGA3Q08378 1498 aa41.15■■■■■ 4.18
RAPGEF1-206ENST00000438647 MAPKBP1O60336 1514 aa41.05■■■■■ 4.16
RAPGEF1-206ENST00000438647 UACAQ9BZF9 1416 aa41.04■■■■■ 4.16
RAPGEF1-206ENST00000438647 KIF21BO75037 1637 aa41.03■■■■■ 4.16
RAPGEF1-206ENST00000438647 UHRF1BP1LA0JNW5 1464 aa41.02■■■■■ 4.16
RAPGEF1-206ENST00000438647 ABCC2Q92887 1545 aa40.99■■■■■ 4.15
RAPGEF1-206ENST00000438647 ABCC10Q5T3U5 1492 aa40.9■■■■■ 4.14
RAPGEF1-206ENST00000438647 KIF13AQ9H1H9 1805 aa40.86■■■■■ 4.13
RAPGEF1-206ENST00000438647 FAM69CQ0P6D2 419 aa40.83■■■■■ 4.13
RAPGEF1-206ENST00000438647 KDM5BQ9UGL1 1544 aa40.82■■■■■ 4.12
RAPGEF1-206ENST00000438647 SAMD9Q5K651 1589 aa40.81■■■■■ 4.12
RAPGEF1-206ENST00000438647 PLB1Q6P1J6 1458 aa40.8■■■■■ 4.12
RAPGEF1-206ENST00000438647 DIP2BQ9P265 1576 aa40.79■■■■■ 4.12
RAPGEF1-206ENST00000438647 P3H3Q8IVL6 736 aa40.77■■■■■ 4.12
RAPGEF1-206ENST00000438647 ASXL2Q76L83 1435 aa40.75■■■■■ 4.11
RAPGEF1-206ENST00000438647 ABCA8O94911 1581 aa40.74■■■■■ 4.11
RAPGEF1-206ENST00000438647 UBTFP17480 764 aaKnown RBP40.73■■■■■ 4.11
RAPGEF1-206ENST00000438647 RANGAP1P46060 587 aaPredicted RBP40.7■■■■■ 4.11
RAPGEF1-206ENST00000438647 ZCCHC11Q5TAX3 1644 aaKnown RBP40.69■■■■■ 4.1
RAPGEF1-206ENST00000438647 EHMT2Q96KQ7 1210 aa40.67■■■■■ 4.1
RAPGEF1-206ENST00000438647 EFCAB5A4FU69 1503 aa40.64■■■■■ 4.1
RAPGEF1-206ENST00000438647 FHOD3Q2V2M9 1422 aa40.57■■■■■ 4.08
RAPGEF1-206ENST00000438647 GLI2P10070 1586 aa40.54■■■■■ 4.08
RAPGEF1-206ENST00000438647 WDR7Q9Y4E6 1490 aa40.51■■■■■ 4.08
RAPGEF1-206ENST00000438647 EPRSP07814 1512 aaKnown RBP40.5■■■■■ 4.07
RAPGEF1-206ENST00000438647 RAPGEF6Q8TEU7 1601 aa40.49■■■■■ 4.07
RAPGEF1-206ENST00000438647 TSPOAP1O95153 1857 aa40.42■■■■■ 4.06
RAPGEF1-206ENST00000438647 ATP10BO94823 1461 aa40.41■■■■■ 4.06
RAPGEF1-206ENST00000438647 ARID3CA6NKF2 412 aa40.38■■■■■ 4.05
RAPGEF1-206ENST00000438647 ARHGAP35Q9NRY4 1499 aa40.34■■■■■ 4.05
RAPGEF1-206ENST00000438647 NUP153P49790 1475 aaKnown RBP40.33■■■■■ 4.05
RAPGEF1-206ENST00000438647 MAP3K4Q9Y6R4 1608 aa40.31■■■■■ 4.04
RAPGEF1-206ENST00000438647 KCNH8Q96L42 1107 aa40.3■■■■■ 4.04
RAPGEF1-206ENST00000438647 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP40.29■■■■■ 4.04
RAPGEF1-206ENST00000438647 HNRNPUL2Q1KMD3 747 aaKnown RBP40.29■■■■■ 4.04
RAPGEF1-206ENST00000438647 FMN1Q68DA7 1419 aa40.29■■■■■ 4.04
RAPGEF1-206ENST00000438647 PPRC1Q5VV67 1664 aaKnown RBP40.24■■■■■ 4.03
RAPGEF1-206ENST00000438647 TEX14Q8IWB6 1497 aa40.24■■■■■ 4.03
RAPGEF1-206ENST00000438647 KDM6BO15054 1643 aa40.24■■■■■ 4.03
RAPGEF1-206ENST00000438647 CFAP43Q8NDM7 1665 aa40.19■■■■■ 4.02
RAPGEF1-206ENST00000438647 CD109Q6YHK3 1445 aa40.17■■■■■ 4.02
RAPGEF1-206ENST00000438647 PLEKHD1A6NEE1 506 aa40.11■■■■■ 4.01
RAPGEF1-206ENST00000438647 MAGI3Q5TCQ9 1506 aa40.11■■■■■ 4.01
RAPGEF1-206ENST00000438647 HECW1Q76N89 1606 aa40.09■■■■■ 4.01
RAPGEF1-206ENST00000438647 ATP1B4Q9UN42 357 aaPredicted RBP40.06■■■■■ 4
RAPGEF1-206ENST00000438647 CLIP1P30622 1438 aa40.05■■■■■ 4
RAPGEF1-206ENST00000438647 ABCA9Q8IUA7 1624 aa40.03■■■■■ 4
RAPGEF1-206ENST00000438647 CDK13Q14004 1512 aaKnown RBP40.01■■■■□ 3.99
RAPGEF1-206ENST00000438647 CDK11AQ9UQ88 783 aaPredicted RBP39.93■■■■□ 3.98
RAPGEF1-206ENST00000438647 COL17A1Q9UMD9 1497 aaPredicted RBP39.92■■■■□ 3.98
RAPGEF1-206ENST00000438647 CASKIN1Q8WXD9 1431 aa39.91■■■■□ 3.98
RAPGEF1-206ENST00000438647 PHLDB1Q86UU1 1377 aa39.84■■■■□ 3.97
RAPGEF1-206ENST00000438647 PCF11O94913 1555 aaKnown RBP39.84■■■■□ 3.97
RAPGEF1-206ENST00000438647 CCDC18Q5T9S5 1454 aa39.81■■■■□ 3.96
RAPGEF1-206ENST00000438647 FYCO1Q9BQS8 1478 aa39.81■■■■□ 3.96
RAPGEF1-206ENST00000438647 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP39.8■■■■□ 3.961e-24■■■■□ 23.9
RAPGEF1-206ENST00000438647 CEP162Q5TB80 1403 aa39.79■■■■□ 3.96
RAPGEF1-206ENST00000438647 NEO1Q92859 1461 aa39.79■■■■□ 3.96
RAPGEF1-206ENST00000438647 ARAP3Q8WWN8 1544 aa39.76■■■■□ 3.96
RAPGEF1-206ENST00000438647 LRRIQ1Q96JM4 1722 aa39.74■■■■□ 3.95
RAPGEF1-206ENST00000438647 TROQ12816 1431 aaPredicted RBP39.74■■■■□ 3.95
RAPGEF1-206ENST00000438647 TTC37Q6PGP7 1564 aa39.72■■■■□ 3.95
RAPGEF1-206ENST00000438647 LOC105371045A0A1W2PR82 267 aa39.69■■■■□ 3.94
RAPGEF1-206ENST00000438647 KIF14Q15058 1648 aa39.66■■■■□ 3.94
RAPGEF1-206ENST00000438647 CFAP74Q9C0B2 1584 aa39.64■■■■□ 3.94
RAPGEF1-206ENST00000438647 FANCAO15360 1455 aa39.64■■■■□ 3.94
RAPGEF1-206ENST00000438647 AEBP2Q6ZN18 517 aaPredicted RBP39.63■■■■□ 3.93
RAPGEF1-206ENST00000438647 PLCH2O75038 1416 aa39.6■■■■□ 3.93
RAPGEF1-206ENST00000438647 AKNAQ7Z591 1439 aa39.57■■■■□ 3.93
RAPGEF1-206ENST00000438647 MYO5CQ9NQX4 1742 aa39.53■■■■□ 3.92
RAPGEF1-206ENST00000438647 RAPGEF3O95398 923 aa39.52■■■■□ 3.92
RAPGEF1-206ENST00000438647 DENND4BO75064 1496 aaPredicted RBP39.49■■■■□ 3.91
RAPGEF1-206ENST00000438647 EFCAB2Q5VUJ9 269 aa39.48■■■■□ 3.91
RAPGEF1-206ENST00000438647 ADGRL1O94910 1474 aa39.43■■■■□ 3.9
RAPGEF1-206ENST00000438647 FRMPD1Q5SYB0 1578 aa39.42■■■■□ 3.9
RAPGEF1-206ENST00000438647 KDM4FA0A1W2PPD8 638 aa39.41■■■■□ 3.9
RAPGEF1-206ENST00000438647 ARHGAP5Q13017 1502 aa39.4■■■■□ 3.9
RAPGEF1-206ENST00000438647 RICTORQ6R327 1708 aa39.37■■■■□ 3.89
RAPGEF1-206ENST00000438647 MTUS2Q5JR59 1369 aa39.37■■■■□ 3.89
Retrieved 100 of 20,778 RNA–protein pairs in 100.8 ms