RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 ERCC6L2Q5T890 1561 aa25.73■■□□□ 1.71
LIMS3-201ENST00000437679 KIAA0586Q9BVV6 1533 aa25.7■■□□□ 1.7
LIMS3-201ENST00000437679 PRG4Q92954 1404 aaPredicted RBP25.7■■□□□ 1.7
LIMS3-201ENST00000437679 RAPGEF2Q9Y4G8 1499 aa25.64■■□□□ 1.69
LIMS3-201ENST00000437679 IQGAP2Q13576 1575 aa25.53■■□□□ 1.68
LIMS3-201ENST00000437679 TRHP20396 242 aaPredicted RBP25.51■■□□□ 1.67
LIMS3-201ENST00000437679 PRXQ9BXM0 1461 aa25.49■■□□□ 1.67
LIMS3-201ENST00000437679 CARMIL2Q6F5E8 1435 aa25.46■■□□□ 1.67
LIMS3-201ENST00000437679 CSRNP3Q8WYN3 585 aa25.46■■□□□ 1.67
LIMS3-201ENST00000437679 EEA1Q15075 1411 aa25.46■■□□□ 1.67
LIMS3-201ENST00000437679 CHIC1Q5VXU3 224 aa25.44■■□□□ 1.66
LIMS3-201ENST00000437679 CTTNBP2Q8WZ74 1663 aa25.4■■□□□ 1.66
LIMS3-201ENST00000437679 PTPRGP23470 1445 aa25.38■■□□□ 1.65
LIMS3-201ENST00000437679 UGGT2Q9NYU1 1516 aa25.38■■□□□ 1.65
LIMS3-201ENST00000437679 TNIKQ9UKE5 1360 aa25.38■■□□□ 1.65
LIMS3-201ENST00000437679 TTBK1Q5TCY1 1321 aaPredicted RBP25.36■■□□□ 1.65
LIMS3-201ENST00000437679 FAM9AQ8IZU1 332 aaPredicted RBP25.35■■□□□ 1.65
LIMS3-201ENST00000437679 DISP1Q96F81 1524 aa25.34■■□□□ 1.65
LIMS3-201ENST00000437679 NPM1P06748 294 aaKnown RBP eCLIP25.34■■□□□ 1.65
LIMS3-201ENST00000437679 ADCY10Q96PN6 1610 aa25.3■■□□□ 1.64
LIMS3-201ENST00000437679 KIAA0556O60303 1618 aa25.28■■□□□ 1.64
LIMS3-201ENST00000437679 GOLGA3Q08378 1498 aa25.26■■□□□ 1.63
LIMS3-201ENST00000437679 UACAQ9BZF9 1416 aa25.2■■□□□ 1.62
LIMS3-201ENST00000437679 MAPKBP1O60336 1514 aa25.19■■□□□ 1.62
LIMS3-201ENST00000437679 KIF21BO75037 1637 aa25.19■■□□□ 1.62
LIMS3-201ENST00000437679 UHRF1BP1LA0JNW5 1464 aa25.17■■□□□ 1.62
LIMS3-201ENST00000437679 ABCC2Q92887 1545 aa25.16■■□□□ 1.62
LIMS3-201ENST00000437679 KIF13AQ9H1H9 1805 aa25.11■■□□□ 1.61
LIMS3-201ENST00000437679 ABCC10Q5T3U5 1492 aa25.1■■□□□ 1.61
LIMS3-201ENST00000437679 FAM69CQ0P6D2 419 aa25.09■■□□□ 1.61
LIMS3-201ENST00000437679 P3H3Q8IVL6 736 aa25.08■■□□□ 1.61
LIMS3-201ENST00000437679 PLB1Q6P1J6 1458 aa25.05■■□□□ 1.6
LIMS3-201ENST00000437679 SAMD9Q5K651 1589 aa25.05■■□□□ 1.6
LIMS3-201ENST00000437679 DIP2BQ9P265 1576 aa25.05■■□□□ 1.6
LIMS3-201ENST00000437679 KDM5BQ9UGL1 1544 aa25.04■■□□□ 1.6
LIMS3-201ENST00000437679 RANGAP1P46060 587 aaPredicted RBP25.04■■□□□ 1.6
LIMS3-201ENST00000437679 EHMT2Q96KQ7 1210 aa25.04■■□□□ 1.6
LIMS3-201ENST00000437679 UBTFP17480 764 aaKnown RBP25.03■■□□□ 1.6
LIMS3-201ENST00000437679 ASXL2Q76L83 1435 aa25.02■■□□□ 1.6
LIMS3-201ENST00000437679 ABCA8O94911 1581 aa25.01■■□□□ 1.59
LIMS3-201ENST00000437679 ZCCHC11Q5TAX3 1644 aaKnown RBP25■■□□□ 1.59
LIMS3-201ENST00000437679 EFCAB5A4FU69 1503 aa24.93■■□□□ 1.58
LIMS3-201ENST00000437679 FHOD3Q2V2M9 1422 aa24.92■■□□□ 1.58
LIMS3-201ENST00000437679 GLI2P10070 1586 aa24.88■■□□□ 1.57
LIMS3-201ENST00000437679 TSPOAP1O95153 1857 aa24.88■■□□□ 1.57
LIMS3-201ENST00000437679 WDR7Q9Y4E6 1490 aa24.87■■□□□ 1.57
LIMS3-201ENST00000437679 EPRSP07814 1512 aaKnown RBP24.86■■□□□ 1.57
LIMS3-201ENST00000437679 RAPGEF6Q8TEU7 1601 aa24.86■■□□□ 1.57
LIMS3-201ENST00000437679 ARID3CA6NKF2 412 aa24.84■■□□□ 1.57
LIMS3-201ENST00000437679 ATP10BO94823 1461 aa24.82■■□□□ 1.56
LIMS3-201ENST00000437679 KCNH8Q96L42 1107 aa24.78■■□□□ 1.56
LIMS3-201ENST00000437679 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.77■■□□□ 1.56
LIMS3-201ENST00000437679 HNRNPUL2Q1KMD3 747 aaKnown RBP24.77■■□□□ 1.56
LIMS3-201ENST00000437679 ARHGAP35Q9NRY4 1499 aa24.77■■□□□ 1.56
LIMS3-201ENST00000437679 NUP153P49790 1475 aaKnown RBP24.76■■□□□ 1.55
LIMS3-201ENST00000437679 MAP3K4Q9Y6R4 1608 aa24.75■■□□□ 1.55
LIMS3-201ENST00000437679 PPRC1Q5VV67 1664 aaKnown RBP24.72■■□□□ 1.55
LIMS3-201ENST00000437679 FMN1Q68DA7 1419 aa24.71■■□□□ 1.55
LIMS3-201ENST00000437679 KDM6BO15054 1643 aa24.71■■□□□ 1.55
LIMS3-201ENST00000437679 TEX14Q8IWB6 1497 aa24.7■■□□□ 1.54
LIMS3-201ENST00000437679 CFAP43Q8NDM7 1665 aa24.68■■□□□ 1.54
LIMS3-201ENST00000437679 CD109Q6YHK3 1445 aa24.67■■□□□ 1.54
LIMS3-201ENST00000437679 ATP1B4Q9UN42 357 aaPredicted RBP24.64■■□□□ 1.54
LIMS3-201ENST00000437679 PLEKHD1A6NEE1 506 aa24.63■■□□□ 1.53
LIMS3-201ENST00000437679 MAGI3Q5TCQ9 1506 aa24.61■■□□□ 1.53
LIMS3-201ENST00000437679 HECW1Q76N89 1606 aa24.61■■□□□ 1.53
LIMS3-201ENST00000437679 CLIP1P30622 1438 aa24.58■■□□□ 1.53
LIMS3-201ENST00000437679 ABCA9Q8IUA7 1624 aa24.57■■□□□ 1.52
LIMS3-201ENST00000437679 CDK13Q14004 1512 aaKnown RBP24.57■■□□□ 1.52
LIMS3-201ENST00000437679 COL17A1Q9UMD9 1497 aaPredicted RBP24.51■■□□□ 1.51
LIMS3-201ENST00000437679 CDK11AQ9UQ88 783 aaPredicted RBP24.51■■□□□ 1.51
LIMS3-201ENST00000437679 CASKIN1Q8WXD9 1431 aa24.49■■□□□ 1.51
LIMS3-201ENST00000437679 PCF11O94913 1555 aaKnown RBP24.47■■□□□ 1.51
LIMS3-201ENST00000437679 PHLDB1Q86UU1 1377 aa24.44■■□□□ 1.5
LIMS3-201ENST00000437679 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP24.44■■□□□ 1.5
LIMS3-201ENST00000437679 LRRIQ1Q96JM4 1722 aa24.43■■□□□ 1.5
LIMS3-201ENST00000437679 CCDC18Q5T9S5 1454 aa24.43■■□□□ 1.5
LIMS3-201ENST00000437679 CEP162Q5TB80 1403 aa24.43■■□□□ 1.5
LIMS3-201ENST00000437679 FYCO1Q9BQS8 1478 aa24.42■■□□□ 1.5
LIMS3-201ENST00000437679 NEO1Q92859 1461 aa24.41■■□□□ 1.5
LIMS3-201ENST00000437679 LOC105371045A0A1W2PR82 267 aa24.41■■□□□ 1.5
LIMS3-201ENST00000437679 ARAP3Q8WWN8 1544 aa24.4■■□□□ 1.5
LIMS3-201ENST00000437679 TTC37Q6PGP7 1564 aa24.39■■□□□ 1.5
LIMS3-201ENST00000437679 TROQ12816 1431 aaPredicted RBP24.39■■□□□ 1.5
LIMS3-201ENST00000437679 AEBP2Q6ZN18 517 aaPredicted RBP24.38■■□□□ 1.49
LIMS3-201ENST00000437679 KIF14Q15058 1648 aa24.35■■□□□ 1.49
LIMS3-201ENST00000437679 CFAP74Q9C0B2 1584 aa24.33■■□□□ 1.49
LIMS3-201ENST00000437679 FANCAO15360 1455 aa24.33■■□□□ 1.49
LIMS3-201ENST00000437679 PLCH2O75038 1416 aa24.31■■□□□ 1.48
LIMS3-201ENST00000437679 AKNAQ7Z591 1439 aa24.3■■□□□ 1.48
LIMS3-201ENST00000437679 MYO5CQ9NQX4 1742 aa24.29■■□□□ 1.48
LIMS3-201ENST00000437679 RAPGEF3O95398 923 aa24.28■■□□□ 1.48
LIMS3-201ENST00000437679 EFCAB2Q5VUJ9 269 aa24.25■■□□□ 1.47
LIMS3-201ENST00000437679 DENND4BO75064 1496 aaPredicted RBP24.25■■□□□ 1.47
LIMS3-201ENST00000437679 KDM4FA0A1W2PPD8 638 aa24.21■■□□□ 1.47
LIMS3-201ENST00000437679 FRMPD1Q5SYB0 1578 aa24.2■■□□□ 1.47
LIMS3-201ENST00000437679 ARHGAP5Q13017 1502 aa24.2■■□□□ 1.47
LIMS3-201ENST00000437679 ADGRL1O94910 1474 aa24.2■■□□□ 1.47
LIMS3-201ENST00000437679 RICTORQ6R327 1708 aa24.18■■□□□ 1.46
LIMS3-201ENST00000437679 MTUS2Q5JR59 1369 aa24.17■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms