RNA–Protein interactions for RNA: ENST00000436336.6

CPSF4-204, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CPSF4, Length 1,738 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-204ENST00000436336 CEP162Q5TB80 1403 aa36.96■■■■□ 3.51
CPSF4-204ENST00000436336 CEP170Q5SW79 1584 aa36.94■■■■□ 3.5
CPSF4-204ENST00000436336 NUP160Q12769 1436 aa36.92■■■■□ 3.5
CPSF4-204ENST00000436336 IQGAP2Q13576 1575 aa36.88■■■■□ 3.49
CPSF4-204ENST00000436336 KIAA0586Q9BVV6 1533 aa36.86■■■■□ 3.49
CPSF4-204ENST00000436336 CLIP1P30622 1438 aa36.84■■■■□ 3.49
CPSF4-204ENST00000436336 RANGAP1P46060 587 aaPredicted RBP36.76■■■■□ 3.47
CPSF4-204ENST00000436336 EFCAB5A4FU69 1503 aa36.71■■■■□ 3.47
CPSF4-204ENST00000436336 ARHGAP35Q9NRY4 1499 aa36.69■■■■□ 3.46
CPSF4-204ENST00000436336 UGGT2Q9NYU1 1516 aa36.68■■■■□ 3.46
CPSF4-204ENST00000436336 SAMD9Q5K651 1589 aa36.67■■■■□ 3.46
CPSF4-204ENST00000436336 CLASP1Q7Z460 1538 aa36.63■■■■□ 3.45
CPSF4-204ENST00000436336 ARAP1Q96P48 1450 aa36.57■■■■□ 3.44
CPSF4-204ENST00000436336 SHROOM2Q13796 1616 aa36.56■■■■□ 3.44
CPSF4-204ENST00000436336 JPH4Q96JJ6 628 aa36.54■■■■□ 3.44
CPSF4-204ENST00000436336 KIAA0556O60303 1618 aa36.51■■■■□ 3.44
CPSF4-204ENST00000436336 OSCARQ8IYS5 282 aa36.5■■■■□ 3.43
CPSF4-204ENST00000436336 DISP1Q96F81 1524 aa36.5■■■■□ 3.43
CPSF4-204ENST00000436336 FHOD3Q2V2M9 1422 aa36.45■■■■□ 3.43
CPSF4-204ENST00000436336 P3H3Q8IVL6 736 aa36.45■■■■□ 3.43
CPSF4-204ENST00000436336 VPS8Q8N3P4 1428 aa36.45■■■■□ 3.42
CPSF4-204ENST00000436336 CARMIL2Q6F5E8 1435 aa36.43■■■■□ 3.42
CPSF4-204ENST00000436336 PRG4Q92954 1404 aaPredicted RBP36.38■■■■□ 3.41
CPSF4-204ENST00000436336 FMN1Q68DA7 1419 aa36.33■■■■□ 3.41
CPSF4-204ENST00000436336 ERCC6L2Q5T890 1561 aa36.24■■■■□ 3.39
CPSF4-204ENST00000436336 PCF11O94913 1555 aaKnown RBP36.22■■■■□ 3.39
CPSF4-204ENST00000436336 CASKIN1Q8WXD9 1431 aa36.17■■■■□ 3.38
CPSF4-204ENST00000436336 FYCO1Q9BQS8 1478 aa36.16■■■■□ 3.38
CPSF4-204ENST00000436336 RAPGEF6Q8TEU7 1601 aa36.09■■■■□ 3.37
CPSF4-204ENST00000436336 PTPRGP23470 1445 aa36.09■■■■□ 3.37
CPSF4-204ENST00000436336 TTBK1Q5TCY1 1321 aaPredicted RBP36.07■■■■□ 3.37
CPSF4-204ENST00000436336 HECW1Q76N89 1606 aa36.07■■■■□ 3.37
CPSF4-204ENST00000436336 LRRIQ1Q96JM4 1722 aa36.03■■■■□ 3.36
CPSF4-204ENST00000436336 ABCA8O94911 1581 aa36.02■■■■□ 3.36
CPSF4-204ENST00000436336 APLP2Q06481 763 aa36.02■■■■□ 3.36
CPSF4-204ENST00000436336 PLB1Q6P1J6 1458 aa36■■■■□ 3.35
CPSF4-204ENST00000436336 CFAP43Q8NDM7 1665 aa35.99■■■■□ 3.35
CPSF4-204ENST00000436336 MAP3K1Q13233 1512 aa35.99■■■■□ 3.35
CPSF4-204ENST00000436336 ATP1B4Q9UN42 357 aaPredicted RBP35.98■■■■□ 3.35
CPSF4-204ENST00000436336 TIAM1Q13009 1591 aa35.96■■■■□ 3.35
CPSF4-204ENST00000436336 ARHGEF11O15085 1522 aa35.95■■■■□ 3.35
CPSF4-204ENST00000436336 CCDC18Q5T9S5 1454 aa35.92■■■■□ 3.34
CPSF4-204ENST00000436336 NUP153P49790 1475 aaKnown RBP35.91■■■■□ 3.34
CPSF4-204ENST00000436336 UACAQ9BZF9 1416 aa35.9■■■■□ 3.34
CPSF4-204ENST00000436336 EPRSP07814 1512 aaKnown RBP35.89■■■■□ 3.34
CPSF4-204ENST00000436336 RIMBP3CA6NJZ7 1639 aa35.86■■■■□ 3.33
CPSF4-204ENST00000436336 RIMBP3BA6NNM3 1639 aa35.86■■■■□ 3.33
CPSF4-204ENST00000436336 RIMBP3Q9UFD9 1639 aa35.86■■■■□ 3.33
CPSF4-204ENST00000436336 ABCC2Q92887 1545 aa35.84■■■■□ 3.33
CPSF4-204ENST00000436336 UHRF1BP1LA0JNW5 1464 aa35.8■■■■□ 3.32
CPSF4-204ENST00000436336 CDK13Q14004 1512 aaKnown RBP35.8■■■■□ 3.32
CPSF4-204ENST00000436336 PPARGC1BQ86YN6 1023 aaKnown RBP35.77■■■■□ 3.32
CPSF4-204ENST00000436336 LRRC9Q6ZRR7 1453 aa35.75■■■■□ 3.31
CPSF4-204ENST00000436336 KANK4Q5T7N3 995 aaPredicted RBP35.74■■■■□ 3.31
CPSF4-204ENST00000436336 ADCY10Q96PN6 1610 aa35.72■■■■□ 3.31
CPSF4-204ENST00000436336 ATP10BO94823 1461 aa35.7■■■■□ 3.31
CPSF4-204ENST00000436336 ARID3CA6NKF2 412 aa35.7■■■■□ 3.31
CPSF4-204ENST00000436336 EHBP1L1Q8N3D4 1523 aa35.66■■■■□ 3.3
CPSF4-204ENST00000436336 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP35.64■■■■□ 3.3
CPSF4-204ENST00000436336 HNRNPUL2Q1KMD3 747 aaKnown RBP35.64■■■■□ 3.3
CPSF4-204ENST00000436336 MAGI3Q5TCQ9 1506 aa35.64■■■■□ 3.3
CPSF4-204ENST00000436336 KDM5BQ9UGL1 1544 aa35.64■■■■□ 3.3
CPSF4-204ENST00000436336 ZCCHC11Q5TAX3 1644 aaKnown RBP35.64■■■■□ 3.3
CPSF4-204ENST00000436336 MTUS2Q5JR59 1369 aa35.63■■■■□ 3.29
CPSF4-204ENST00000436336 CDK11AQ9UQ88 783 aaPredicted RBP35.61■■■■□ 3.29
CPSF4-204ENST00000436336 SUPT6HQ7KZ85 1726 aaKnown RBP35.57■■■■□ 3.28
CPSF4-204ENST00000436336 TROQ12816 1431 aaPredicted RBP35.51■■■■□ 3.28
CPSF4-204ENST00000436336 CYB5RLQ6IPT4 315 aa35.51■■■■□ 3.27
CPSF4-204ENST00000436336 PLEKHD1A6NEE1 506 aa35.49■■■■□ 3.27
CPSF4-204ENST00000436336 NCOA2Q15596 1464 aa35.43■■■■□ 3.26
CPSF4-204ENST00000436336 NPM1P06748 294 aaKnown RBP eCLIP35.4■■■■□ 3.26
CPSF4-204ENST00000436336 KIF14Q15058 1648 aa35.4■■■■□ 3.26
CPSF4-204ENST00000436336 TRIM26Q12899 539 aaPredicted RBP35.37■■■■□ 3.25
CPSF4-204ENST00000436336 PHLDB1Q86UU1 1377 aa35.34■■■■□ 3.25
CPSF4-204ENST00000436336 WDR7Q9Y4E6 1490 aa35.31■■■■□ 3.24
CPSF4-204ENST00000436336 ASXL2Q76L83 1435 aa35.28■■■■□ 3.24
CPSF4-204ENST00000436336 DNAJC5Q9H3Z4 198 aa35.27■■■■□ 3.24
CPSF4-204ENST00000436336 MAPKBP1O60336 1514 aa35.25■■■■□ 3.23
CPSF4-204ENST00000436336 MYOM3Q5VTT5 1437 aa35.25■■■■□ 3.23
CPSF4-204ENST00000436336 RRBP1Q9P2E9 1410 aaKnown RBP35.25■■■■□ 3.23
CPSF4-204ENST00000436336 ABCC10Q5T3U5 1492 aa35.25■■■■□ 3.23
CPSF4-204ENST00000436336 ITSN2Q9NZM3 1697 aa35.25■■■■□ 3.23
CPSF4-204ENST00000436336 CDC42BPAQ5VT25 1732 aa35.21■■■■□ 3.23
CPSF4-204ENST00000436336 CCNB3Q8WWL7 1395 aa35.2■■■■□ 3.23
CPSF4-204ENST00000436336 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP35.2■■■■□ 3.237e-9■■■□□ 17.9
CPSF4-204ENST00000436336 FGD6Q6ZV73 1430 aa35.18■■■■□ 3.22
CPSF4-204ENST00000436336 TTC37Q6PGP7 1564 aa35.17■■■■□ 3.22
CPSF4-204ENST00000436336 KCNH8Q96L42 1107 aa35.17■■■■□ 3.22
CPSF4-204ENST00000436336 GPATCH8Q9UKJ3 1502 aaKnown RBP35.14■■■■□ 3.22
CPSF4-204ENST00000436336 MYO5CQ9NQX4 1742 aa35.14■■■■□ 3.22
CPSF4-204ENST00000436336 MIA2Q96PC5 1412 aa35.14■■■■□ 3.22
CPSF4-204ENST00000436336 ABCA9Q8IUA7 1624 aa35.11■■■■□ 3.21
CPSF4-204ENST00000436336 PREX2Q70Z35 1606 aa35.11■■■■□ 3.21
CPSF4-204ENST00000436336 PTPN23Q9H3S7 1636 aa35.11■■■■□ 3.21
CPSF4-204ENST00000436336 PCGF6Q9BYE7 350 aa35.1■■■■□ 3.21
CPSF4-204ENST00000436336 CDC42BPBQ9Y5S2 1711 aa35.09■■■■□ 3.21
CPSF4-204ENST00000436336 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP35.05■■■■□ 3.2
CPSF4-204ENST00000436336 TCOF1Q13428 1488 aaKnown RBP35.04■■■■□ 3.2
CPSF4-204ENST00000436336 CFDP1Q9UEE9 299 aaPredicted RBP35.01■■■■□ 3.19
CPSF4-204ENST00000436336 FAM50AQ14320 339 aaKnown RBP34.98■■■■□ 3.19
Retrieved 100 of 20,778 RNA–protein pairs in 130.1 ms