RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 NUP160Q12769 1436 aa20.86■□□□□ 0.93
USP40-205ENST00000430158 EEA1Q15075 1411 aa20.85■□□□□ 0.93
USP40-205ENST00000430158 CLASP1Q7Z460 1538 aa20.84■□□□□ 0.93
USP40-205ENST00000430158 CEP170Q5SW79 1584 aa20.83■□□□□ 0.92
USP40-205ENST00000430158 PRXQ9BXM0 1461 aa20.82■□□□□ 0.92
USP40-205ENST00000430158 CSRNP3Q8WYN3 585 aa20.81■□□□□ 0.92
USP40-205ENST00000430158 RAPGEF2Q9Y4G8 1499 aa20.78■□□□□ 0.92
USP40-205ENST00000430158 FAM9AQ8IZU1 332 aaPredicted RBP20.72■□□□□ 0.91
USP40-205ENST00000430158 KIAA0586Q9BVV6 1533 aa20.68■□□□□ 0.9
USP40-205ENST00000430158 SHROOM2Q13796 1616 aa20.68■□□□□ 0.9
USP40-205ENST00000430158 KIF21BO75037 1637 aa20.64■□□□□ 0.9
USP40-205ENST00000430158 ARHGEF11O15085 1522 aa20.64■□□□□ 0.9
USP40-205ENST00000430158 RIMBP3CA6NJZ7 1639 aa20.63■□□□□ 0.89
USP40-205ENST00000430158 RIMBP3BA6NNM3 1639 aa20.63■□□□□ 0.89
USP40-205ENST00000430158 RIMBP3Q9UFD9 1639 aa20.63■□□□□ 0.89
USP40-205ENST00000430158 JPH4Q96JJ6 628 aa20.61■□□□□ 0.89
USP40-205ENST00000430158 ERCC6L2Q5T890 1561 aa20.59■□□□□ 0.89
USP40-205ENST00000430158 IQGAP2Q13576 1575 aa20.56■□□□□ 0.88
USP40-205ENST00000430158 CTTNBP2Q8WZ74 1663 aa20.56■□□□□ 0.88
USP40-205ENST00000430158 PRG4Q92954 1404 aaPredicted RBP20.53■□□□□ 0.88
USP40-205ENST00000430158 ARAP1Q96P48 1450 aa20.52■□□□□ 0.88
USP40-205ENST00000430158 MAPK8IP2Q13387 824 aaPredicted RBP20.52■□□□□ 0.88
USP40-205ENST00000430158 UGGT2Q9NYU1 1516 aa20.52■□□□□ 0.87
USP40-205ENST00000430158 GOLGA3Q08378 1498 aa20.5■□□□□ 0.87
USP40-205ENST00000430158 DISP1Q96F81 1524 aa20.48■□□□□ 0.87
USP40-205ENST00000430158 DMRT2Q9Y5R5 561 aa20.47■□□□□ 0.87
USP40-205ENST00000430158 CYB5RLQ6IPT4 315 aa20.4■□□□□ 0.86
USP40-205ENST00000430158 EHMT2Q96KQ7 1210 aa20.39■□□□□ 0.85
USP40-205ENST00000430158 KIAA0556O60303 1618 aa20.38■□□□□ 0.85
USP40-205ENST00000430158 CARMIL2Q6F5E8 1435 aa20.38■□□□□ 0.85
USP40-205ENST00000430158 UBTFP17480 764 aaKnown RBP20.37■□□□□ 0.85
USP40-205ENST00000430158 SAMD9Q5K651 1589 aa20.36■□□□□ 0.85
USP40-205ENST00000430158 TNIKQ9UKE5 1360 aa20.35■□□□□ 0.85
USP40-205ENST00000430158 PTPRGP23470 1445 aa20.31■□□□□ 0.84
USP40-205ENST00000430158 LOC105371045A0A1W2PR82 267 aa20.29■□□□□ 0.84
USP40-205ENST00000430158 EFCAB5A4FU69 1503 aa20.26■□□□□ 0.83
USP40-205ENST00000430158 ARHGAP35Q9NRY4 1499 aa20.24■□□□□ 0.83
USP40-205ENST00000430158 P3H3Q8IVL6 736 aa20.23■□□□□ 0.83
USP40-205ENST00000430158 ADCY10Q96PN6 1610 aa20.23■□□□□ 0.83
USP40-205ENST00000430158 RANGAP1P46060 587 aaPredicted RBP20.22■□□□□ 0.83
USP40-205ENST00000430158 FHOD3Q2V2M9 1422 aa20.2■□□□□ 0.82
USP40-205ENST00000430158 UHRF1BP1LA0JNW5 1464 aa20.2■□□□□ 0.82
USP40-205ENST00000430158 UACAQ9BZF9 1416 aa20.19■□□□□ 0.82
USP40-205ENST00000430158 ABCA8O94911 1581 aa20.19■□□□□ 0.82
USP40-205ENST00000430158 SCAF1Q9H7N4 1312 aaKnown RBP20.19■□□□□ 0.82
USP40-205ENST00000430158 TTBK1Q5TCY1 1321 aaPredicted RBP20.18■□□□□ 0.82
USP40-205ENST00000430158 PLB1Q6P1J6 1458 aa20.18■□□□□ 0.82
USP40-205ENST00000430158 ABCC2Q92887 1545 aa20.16■□□□□ 0.82
USP40-205ENST00000430158 CLIP1P30622 1438 aa20.14■□□□□ 0.81
USP40-205ENST00000430158 CEP162Q5TB80 1403 aa20.11■□□□□ 0.81
USP40-205ENST00000430158 KDM5BQ9UGL1 1544 aa20.11■□□□□ 0.81
USP40-205ENST00000430158 RAPGEF6Q8TEU7 1601 aa20.08■□□□□ 0.8
USP40-205ENST00000430158 FMN1Q68DA7 1419 aa20.05■□□□□ 0.8
USP40-205ENST00000430158 MAPKBP1O60336 1514 aa20.05■□□□□ 0.8
USP40-205ENST00000430158 NUP153P49790 1475 aaKnown RBP20.05■□□□□ 0.8
USP40-205ENST00000430158 ZCCHC11Q5TAX3 1644 aaKnown RBP20.03■□□□□ 0.8
USP40-205ENST00000430158 ATP10BO94823 1461 aa20.02■□□□□ 0.8
USP40-205ENST00000430158 NPM1P06748 294 aaKnown RBP eCLIP20■□□□□ 0.79
USP40-205ENST00000430158 CASKIN1Q8WXD9 1431 aa19.97■□□□□ 0.79
USP40-205ENST00000430158 ASXL2Q76L83 1435 aa19.96■□□□□ 0.79
USP40-205ENST00000430158 LRRIQ1Q96JM4 1722 aa19.95■□□□□ 0.78
USP40-205ENST00000430158 PCF11O94913 1555 aaKnown RBP19.95■□□□□ 0.78
USP40-205ENST00000430158 KIF13AQ9H1H9 1805 aa19.92■□□□□ 0.78
USP40-205ENST00000430158 ABCC10Q5T3U5 1492 aa19.92■□□□□ 0.78
USP40-205ENST00000430158 HECW1Q76N89 1606 aa19.92■□□□□ 0.78
USP40-205ENST00000430158 ARID3CA6NKF2 412 aa19.92■□□□□ 0.78
USP40-205ENST00000430158 EPRSP07814 1512 aaKnown RBP19.92■□□□□ 0.78
USP40-205ENST00000430158 FYCO1Q9BQS8 1478 aa19.91■□□□□ 0.78
USP40-205ENST00000430158 CDK13Q14004 1512 aaKnown RBP19.9■□□□□ 0.78
USP40-205ENST00000430158 DIP2BQ9P265 1576 aa19.89■□□□□ 0.77
USP40-205ENST00000430158 WDR7Q9Y4E6 1490 aa19.89■□□□□ 0.77
USP40-205ENST00000430158 VPS8Q8N3P4 1428 aa19.86■□□□□ 0.77
USP40-205ENST00000430158 GLI2P10070 1586 aa19.86■□□□□ 0.77
USP40-205ENST00000430158 TRHP20396 242 aaPredicted RBP19.82■□□□□ 0.76
USP40-205ENST00000430158 FAM69CQ0P6D2 419 aa19.82■□□□□ 0.76
USP40-205ENST00000430158 CCDC18Q5T9S5 1454 aa19.81■□□□□ 0.76
USP40-205ENST00000430158 ATP1B4Q9UN42 357 aaPredicted RBP19.81■□□□□ 0.76
USP40-205ENST00000430158 CACNB1Q02641 598 aaPredicted RBP19.8■□□□□ 0.76
USP40-205ENST00000430158 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.79■□□□□ 0.76
USP40-205ENST00000430158 HNRNPUL2Q1KMD3 747 aaKnown RBP19.79■□□□□ 0.76
USP40-205ENST00000430158 MAGI3Q5TCQ9 1506 aa19.78■□□□□ 0.76
USP40-205ENST00000430158 PLEKHD1A6NEE1 506 aa19.78■□□□□ 0.76
USP40-205ENST00000430158 KCNH8Q96L42 1107 aa19.76■□□□□ 0.75
USP40-205ENST00000430158 MAP3K4Q9Y6R4 1608 aa19.76■□□□□ 0.75
USP40-205ENST00000430158 TROQ12816 1431 aaPredicted RBP19.75■□□□□ 0.75
USP40-205ENST00000430158 PPRC1Q5VV67 1664 aaKnown RBP19.75■□□□□ 0.75
USP40-205ENST00000430158 ABCA9Q8IUA7 1624 aa19.74■□□□□ 0.75
USP40-205ENST00000430158 CDK11AQ9UQ88 783 aaPredicted RBP19.72■□□□□ 0.75
USP40-205ENST00000430158 CFAP43Q8NDM7 1665 aa19.71■□□□□ 0.75
USP40-205ENST00000430158 MAP3K1Q13233 1512 aa19.71■□□□□ 0.75
USP40-205ENST00000430158 TSPOAP1O95153 1857 aa19.7■□□□□ 0.74
USP40-205ENST00000430158 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.7■□□□□ 0.74
USP40-205ENST00000430158 TIAM1Q13009 1591 aa19.69■□□□□ 0.74
USP40-205ENST00000430158 KIF14Q15058 1648 aa19.69■□□□□ 0.74
USP40-205ENST00000430158 CD109Q6YHK3 1445 aa19.68■□□□□ 0.74
USP40-205ENST00000430158 TTC37Q6PGP7 1564 aa19.66■□□□□ 0.74
USP40-205ENST00000430158 LRRC9Q6ZRR7 1453 aa19.61■□□□□ 0.73
USP40-205ENST00000430158 KANK4Q5T7N3 995 aaPredicted RBP19.61■□□□□ 0.73
USP40-205ENST00000430158 EHBP1L1Q8N3D4 1523 aa19.61■□□□□ 0.73
USP40-205ENST00000430158 MTUS2Q5JR59 1369 aa19.6■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms