RNA–Protein interactions for RNA: ENST00000428868.1

SMC6-204, Transcript of structural maintenance of chromosomes 6, humanhuman

TSL 4

Gene SMC6, Length 544 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC6-204ENST00000428868 GRIN2AQ12879 1464 aa14.32□□□□□ -0.12
SMC6-204ENST00000428868 CLIP1P30622 1438 aa14.29□□□□□ -0.12
SMC6-204ENST00000428868 RANGAP1P46060 587 aaPredicted RBP14.28□□□□□ -0.12
SMC6-204ENST00000428868 IQGAP2Q13576 1575 aa14.28□□□□□ -0.12
SMC6-204ENST00000428868 ARAP1Q96P48 1450 aa14.26□□□□□ -0.13
SMC6-204ENST00000428868 ARHGAP35Q9NRY4 1499 aa14.26□□□□□ -0.13
SMC6-204ENST00000428868 SAMD9Q5K651 1589 aa14.26□□□□□ -0.13
SMC6-204ENST00000428868 NUP160Q12769 1436 aa14.22□□□□□ -0.13
SMC6-204ENST00000428868 FBLN2P98095 1184 aa14.2□□□□□ -0.14
SMC6-204ENST00000428868 CHMP7Q8WUX9 453 aaPredicted RBP14.2□□□□□ -0.14
SMC6-204ENST00000428868 EFCAB5A4FU69 1503 aa14.2□□□□□ -0.14
SMC6-204ENST00000428868 KIAA0586Q9BVV6 1533 aa14.18□□□□□ -0.14
SMC6-204ENST00000428868 LRRIQ1Q96JM4 1722 aa14.18□□□□□ -0.14
SMC6-204ENST00000428868 UGGT2Q9NYU1 1516 aa14.17□□□□□ -0.14
SMC6-204ENST00000428868 KIAA0556O60303 1618 aa14.16□□□□□ -0.14
SMC6-204ENST00000428868 FHOD3Q2V2M9 1422 aa14.15□□□□□ -0.14
SMC6-204ENST00000428868 OSCARQ8IYS5 282 aa14.15□□□□□ -0.14
SMC6-204ENST00000428868 SHROOM2Q13796 1616 aa14.15□□□□□ -0.14
SMC6-204ENST00000428868 CLASP1Q7Z460 1538 aa14.15□□□□□ -0.14
SMC6-204ENST00000428868 VPS8Q8N3P4 1428 aa14.15□□□□□ -0.14
SMC6-204ENST00000428868 PCF11O94913 1555 aaKnown RBP14.14□□□□□ -0.15
SMC6-204ENST00000428868 DISP1Q96F81 1524 aa14.13□□□□□ -0.15
SMC6-204ENST00000428868 P3H3Q8IVL6 736 aa14.12□□□□□ -0.15
SMC6-204ENST00000428868 ERCC6L2Q5T890 1561 aa14.09□□□□□ -0.15
SMC6-204ENST00000428868 CFAP43Q8NDM7 1665 aa14.08□□□□□ -0.16
SMC6-204ENST00000428868 PPARGC1BQ86YN6 1023 aaKnown RBP14.03□□□□□ -0.16
SMC6-204ENST00000428868 JPH4Q96JJ6 628 aa14.01□□□□□ -0.17
SMC6-204ENST00000428868 RAPGEF6Q8TEU7 1601 aa14.01□□□□□ -0.17
SMC6-204ENST00000428868 TIAM1Q13009 1591 aa14□□□□□ -0.17
SMC6-204ENST00000428868 FYCO1Q9BQS8 1478 aa14□□□□□ -0.17
SMC6-204ENST00000428868 PRG4Q92954 1404 aaPredicted RBP14□□□□□ -0.17
SMC6-204ENST00000428868 HECW1Q76N89 1606 aa13.99□□□□□ -0.17
SMC6-204ENST00000428868 FMN1Q68DA7 1419 aa13.98□□□□□ -0.17
SMC6-204ENST00000428868 CASKIN1Q8WXD9 1431 aa13.98□□□□□ -0.17
SMC6-204ENST00000428868 CARMIL2Q6F5E8 1435 aa13.96□□□□□ -0.18
SMC6-204ENST00000428868 TTBK1Q5TCY1 1321 aaPredicted RBP13.95□□□□□ -0.18
SMC6-204ENST00000428868 ABCA8O94911 1581 aa13.95□□□□□ -0.18
SMC6-204ENST00000428868 CDK13Q14004 1512 aaKnown RBP13.94□□□□□ -0.18
SMC6-204ENST00000428868 PLB1Q6P1J6 1458 aa13.93□□□□□ -0.18
SMC6-204ENST00000428868 MAP3K1Q13233 1512 aa13.92□□□□□ -0.18
SMC6-204ENST00000428868 NUP153P49790 1475 aaKnown RBP13.92□□□□□ -0.18
SMC6-204ENST00000428868 MAGI3Q5TCQ9 1506 aa13.91□□□□□ -0.18
SMC6-204ENST00000428868 RIMBP3CA6NJZ7 1639 aa13.91□□□□□ -0.18
SMC6-204ENST00000428868 RIMBP3BA6NNM3 1639 aa13.91□□□□□ -0.18
SMC6-204ENST00000428868 RIMBP3Q9UFD9 1639 aa13.91□□□□□ -0.18
SMC6-204ENST00000428868 KANK4Q5T7N3 995 aaPredicted RBP13.9□□□□□ -0.18
SMC6-204ENST00000428868 TRHP20396 242 aaPredicted RBP13.89□□□□□ -0.19
SMC6-204ENST00000428868 ATP1B4Q9UN42 357 aaPredicted RBP13.89□□□□□ -0.19
SMC6-204ENST00000428868 EPRSP07814 1512 aaKnown RBP13.89□□□□□ -0.19
SMC6-204ENST00000428868 LRRC9Q6ZRR7 1453 aa13.87□□□□□ -0.19
SMC6-204ENST00000428868 CYB5RLQ6IPT4 315 aa13.87□□□□□ -0.19
SMC6-204ENST00000428868 CCDC18Q5T9S5 1454 aa13.87□□□□□ -0.19
SMC6-204ENST00000428868 PTPRGP23470 1445 aa13.85□□□□□ -0.19
SMC6-204ENST00000428868 ARID3CA6NKF2 412 aa13.85□□□□□ -0.19
SMC6-204ENST00000428868 ADCY10Q96PN6 1610 aa13.85□□□□□ -0.19
SMC6-204ENST00000428868 APLP2Q06481 763 aa13.84□□□□□ -0.19
SMC6-204ENST00000428868 SUPT6HQ7KZ85 1726 aaKnown RBP13.84□□□□□ -0.19
SMC6-204ENST00000428868 ZCCHC11Q5TAX3 1644 aaKnown RBP13.83□□□□□ -0.2
SMC6-204ENST00000428868 ARHGEF11O15085 1522 aa13.83□□□□□ -0.2
SMC6-204ENST00000428868 EHBP1L1Q8N3D4 1523 aa13.83□□□□□ -0.2
SMC6-204ENST00000428868 ABCC2Q92887 1545 aa13.83□□□□□ -0.2
SMC6-204ENST00000428868 AEBP2Q6ZN18 517 aaPredicted RBP13.82□□□□□ -0.2
SMC6-204ENST00000428868 KIF14Q15058 1648 aa13.8□□□□□ -0.2
SMC6-204ENST00000428868 UACAQ9BZF9 1416 aa13.8□□□□□ -0.2
SMC6-204ENST00000428868 ATP10BO94823 1461 aa13.79□□□□□ -0.2
SMC6-204ENST00000428868 UHRF1BP1LA0JNW5 1464 aa13.76□□□□□ -0.21
SMC6-204ENST00000428868 TRIM26Q12899 539 aaPredicted RBP13.76□□□□□ -0.21
SMC6-204ENST00000428868 PCGF6Q9BYE7 350 aa13.76□□□□□ -0.21
SMC6-204ENST00000428868 CDC42BPAQ5VT25 1732 aa13.76□□□□□ -0.21
SMC6-204ENST00000428868 MTUS2Q5JR59 1369 aa13.75□□□□□ -0.21
SMC6-204ENST00000428868 NCOA2Q15596 1464 aa13.74□□□□□ -0.21
SMC6-204ENST00000428868 PHLDB1Q86UU1 1377 aa13.74□□□□□ -0.21
SMC6-204ENST00000428868 KDM5BQ9UGL1 1544 aa13.72□□□□□ -0.21
SMC6-204ENST00000428868 TROQ12816 1431 aaPredicted RBP13.71□□□□□ -0.22
SMC6-204ENST00000428868 ITSN2Q9NZM3 1697 aa13.7□□□□□ -0.22
SMC6-204ENST00000428868 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.69□□□□□ -0.22
SMC6-204ENST00000428868 HNRNPUL2Q1KMD3 747 aaKnown RBP13.69□□□□□ -0.22
SMC6-204ENST00000428868 RRBP1Q9P2E9 1410 aaKnown RBP13.69□□□□□ -0.22
SMC6-204ENST00000428868 TTC37Q6PGP7 1564 aa13.69□□□□□ -0.22
SMC6-204ENST00000428868 CDC42BPBQ9Y5S2 1711 aa13.69□□□□□ -0.22
SMC6-204ENST00000428868 PTPN23Q9H3S7 1636 aa13.68□□□□□ -0.22
SMC6-204ENST00000428868 MYO5CQ9NQX4 1742 aa13.67□□□□□ -0.22
SMC6-204ENST00000428868 ABCC10Q5T3U5 1492 aa13.66□□□□□ -0.22
SMC6-204ENST00000428868 MYOM3Q5VTT5 1437 aa13.65□□□□□ -0.22
SMC6-204ENST00000428868 PREX2Q70Z35 1606 aa13.65□□□□□ -0.22
SMC6-204ENST00000428868 FGD6Q6ZV73 1430 aa13.64□□□□□ -0.23
SMC6-204ENST00000428868 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.64□□□□□ -0.239e-7■■■□□ 17.5
SMC6-204ENST00000428868 CCNB3Q8WWL7 1395 aa13.62□□□□□ -0.23
SMC6-204ENST00000428868 CDK11AQ9UQ88 783 aaPredicted RBP13.6□□□□□ -0.23
SMC6-204ENST00000428868 WDR7Q9Y4E6 1490 aa13.6□□□□□ -0.23
SMC6-204ENST00000428868 GPATCH8Q9UKJ3 1502 aaKnown RBP13.59□□□□□ -0.23
SMC6-204ENST00000428868 PLEKHD1A6NEE1 506 aa13.59□□□□□ -0.23
SMC6-204ENST00000428868 TCOF1Q13428 1488 aaKnown RBP13.59□□□□□ -0.23
SMC6-204ENST00000428868 CROCC2H7BZ55 1655 aa13.59□□□□□ -0.23
SMC6-204ENST00000428868 ASXL2Q76L83 1435 aa13.58□□□□□ -0.24
SMC6-204ENST00000428868 ABCA9Q8IUA7 1624 aa13.58□□□□□ -0.24
SMC6-204ENST00000428868 SAMD9LQ8IVG5 1584 aa13.57□□□□□ -0.24
SMC6-204ENST00000428868 DNMT1P26358 1616 aaKnown RBP13.56□□□□□ -0.24
SMC6-204ENST00000428868 CAMSAP2Q08AD1 1489 aa13.55□□□□□ -0.24
SMC6-204ENST00000428868 MAPKBP1O60336 1514 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms