RNA–Protein interactions for RNA: ENST00000422544.2

PDGFC-202, Transcript of platelet derived growth factor C, humanhuman

TSL 5 BASIC

Gene PDGFC, Length 849 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-202ENST00000422544 CARMIL1Q5VZK9 1371 aa15.45■□□□□ 0.06
PDGFC-202ENST00000422544 CSRNP3Q8WYN3 585 aa15.43■□□□□ 0.06
PDGFC-202ENST00000422544 ADAMTS12P58397 1594 aa15.43■□□□□ 0.06
PDGFC-202ENST00000422544 GRIN2AQ12879 1464 aa15.41■□□□□ 0.06
PDGFC-202ENST00000422544 SHROOM2Q13796 1616 aa15.39■□□□□ 0.05
PDGFC-202ENST00000422544 CEP170Q5SW79 1584 aa15.38■□□□□ 0.05
PDGFC-202ENST00000422544 EEA1Q15075 1411 aa15.38■□□□□ 0.05
PDGFC-202ENST00000422544 CUL7Q14999 1698 aa15.35■□□□□ 0.05
PDGFC-202ENST00000422544 RAPGEF2Q9Y4G8 1499 aa15.34■□□□□ 0.05
PDGFC-202ENST00000422544 NUP160Q12769 1436 aa15.34■□□□□ 0.05
PDGFC-202ENST00000422544 PRXQ9BXM0 1461 aa15.33■□□□□ 0.05
PDGFC-202ENST00000422544 EHMT2Q96KQ7 1210 aa15.28■□□□□ 0.04
PDGFC-202ENST00000422544 JPH4Q96JJ6 628 aa15.27■□□□□ 0.04
PDGFC-202ENST00000422544 KIAA0586Q9BVV6 1533 aa15.24■□□□□ 0.03
PDGFC-202ENST00000422544 UBTFP17480 764 aaKnown RBP15.19■□□□□ 0.02
PDGFC-202ENST00000422544 DIP2BQ9P265 1576 aa15.19■□□□□ 0.02
PDGFC-202ENST00000422544 PRG4Q92954 1404 aaPredicted RBP15.18■□□□□ 0.02
PDGFC-202ENST00000422544 KDM4FA0A1W2PPD8 638 aa15.18■□□□□ 0.02
PDGFC-202ENST00000422544 KIF21BO75037 1637 aa15.17■□□□□ 0.02
PDGFC-202ENST00000422544 ADCY10Q96PN6 1610 aa15.16■□□□□ 0.02
PDGFC-202ENST00000422544 GOLGA3Q08378 1498 aa15.15■□□□□ 0.02
PDGFC-202ENST00000422544 ABCC10Q5T3U5 1492 aa15.15■□□□□ 0.02
PDGFC-202ENST00000422544 TSPOAP1O95153 1857 aa15.14■□□□□ 0.01
PDGFC-202ENST00000422544 RANGAP1P46060 587 aaPredicted RBP15.14■□□□□ 0.01
PDGFC-202ENST00000422544 IQGAP2Q13576 1575 aa15.14■□□□□ 0.01
PDGFC-202ENST00000422544 MAPKBP1O60336 1514 aa15.12■□□□□ 0.01
PDGFC-202ENST00000422544 LOC105371045A0A1W2PR82 267 aa15.1■□□□□ 0.01
PDGFC-202ENST00000422544 TTBK1Q5TCY1 1321 aaPredicted RBP15.09■□□□□ 0.01
PDGFC-202ENST00000422544 PPRC1Q5VV67 1664 aaKnown RBP15.09■□□□□ 0.01
PDGFC-202ENST00000422544 CARMIL2Q6F5E8 1435 aa15.09■□□□□ 0.01
PDGFC-202ENST00000422544 UGGT2Q9NYU1 1516 aa15.08■□□□□ 0.01
PDGFC-202ENST00000422544 ILDR1Q86SU0 546 aaPredicted RBP15.08■□□□□ 0
PDGFC-202ENST00000422544 P3H3Q8IVL6 736 aa15.07■□□□□ 0
PDGFC-202ENST00000422544 DISP1Q96F81 1524 aa15.07■□□□□ 0
PDGFC-202ENST00000422544 KDM6BO15054 1643 aa15.06■□□□□ 0
PDGFC-202ENST00000422544 CTTNBP2Q8WZ74 1663 aa15.06■□□□□ 0
PDGFC-202ENST00000422544 PTPRGP23470 1445 aa15.04■□□□□ -0
PDGFC-202ENST00000422544 TNIKQ9UKE5 1360 aa15.04■□□□□ -0
PDGFC-202ENST00000422544 FAM69CQ0P6D2 419 aa15.04■□□□□ -0
PDGFC-202ENST00000422544 KIAA0556O60303 1618 aa14.99□□□□□ -0.01
PDGFC-202ENST00000422544 FHOD3Q2V2M9 1422 aa14.95□□□□□ -0.02
PDGFC-202ENST00000422544 COL17A1Q9UMD9 1497 aaPredicted RBP14.95□□□□□ -0.02
PDGFC-202ENST00000422544 SAMD9Q5K651 1589 aa14.94□□□□□ -0.02
PDGFC-202ENST00000422544 PLPPR3Q6T4P5 718 aa14.92□□□□□ -0.02
PDGFC-202ENST00000422544 ARHGAP35Q9NRY4 1499 aa14.92□□□□□ -0.02
PDGFC-202ENST00000422544 EFCAB5A4FU69 1503 aa14.92□□□□□ -0.02
PDGFC-202ENST00000422544 UACAQ9BZF9 1416 aa14.92□□□□□ -0.02
PDGFC-202ENST00000422544 CLIP1P30622 1438 aa14.91□□□□□ -0.02
PDGFC-202ENST00000422544 ADGRL1O94910 1474 aa14.9□□□□□ -0.02
PDGFC-202ENST00000422544 NPM1P06748 294 aaKnown RBP eCLIP14.9□□□□□ -0.02
PDGFC-202ENST00000422544 PLB1Q6P1J6 1458 aa14.89□□□□□ -0.03
PDGFC-202ENST00000422544 GLI2P10070 1586 aa14.89□□□□□ -0.03
PDGFC-202ENST00000422544 CEP162Q5TB80 1403 aa14.88□□□□□ -0.03
PDGFC-202ENST00000422544 HECW2Q9P2P5 1572 aa14.88□□□□□ -0.03
PDGFC-202ENST00000422544 FOXD1Q16676 465 aa14.87□□□□□ -0.03
PDGFC-202ENST00000422544 ARID3CA6NKF2 412 aa14.86□□□□□ -0.03
PDGFC-202ENST00000422544 UHRF1BP1LA0JNW5 1464 aa14.86□□□□□ -0.03
PDGFC-202ENST00000422544 ABCC2Q92887 1545 aa14.85□□□□□ -0.03
PDGFC-202ENST00000422544 MAP3K4Q9Y6R4 1608 aa14.84□□□□□ -0.03
PDGFC-202ENST00000422544 ATP1B4Q9UN42 357 aaPredicted RBP14.84□□□□□ -0.03
PDGFC-202ENST00000422544 ABCA8O94911 1581 aa14.83□□□□□ -0.04
PDGFC-202ENST00000422544 FMN1Q68DA7 1419 aa14.83□□□□□ -0.04
PDGFC-202ENST00000422544 ASXL2Q76L83 1435 aa14.82□□□□□ -0.04
PDGFC-202ENST00000422544 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.79□□□□□ -0.04
PDGFC-202ENST00000422544 HNRNPUL2Q1KMD3 747 aaKnown RBP14.79□□□□□ -0.04
PDGFC-202ENST00000422544 KDM5BQ9UGL1 1544 aa14.78□□□□□ -0.04
PDGFC-202ENST00000422544 ATP10BO94823 1461 aa14.77□□□□□ -0.04
PDGFC-202ENST00000422544 RAPGEF6Q8TEU7 1601 aa14.77□□□□□ -0.05
PDGFC-202ENST00000422544 NUP153P49790 1475 aaKnown RBP14.76□□□□□ -0.05
PDGFC-202ENST00000422544 EPRSP07814 1512 aaKnown RBP14.76□□□□□ -0.05
PDGFC-202ENST00000422544 ZCCHC11Q5TAX3 1644 aaKnown RBP14.75□□□□□ -0.05
PDGFC-202ENST00000422544 CASKIN1Q8WXD9 1431 aa14.74□□□□□ -0.05
PDGFC-202ENST00000422544 KCNH8Q96L42 1107 aa14.72□□□□□ -0.05
PDGFC-202ENST00000422544 PLEKHD1A6NEE1 506 aa14.7□□□□□ -0.06
PDGFC-202ENST00000422544 CDK13Q14004 1512 aaKnown RBP14.68□□□□□ -0.06
PDGFC-202ENST00000422544 PCF11O94913 1555 aaKnown RBP14.68□□□□□ -0.06
PDGFC-202ENST00000422544 VPS8Q8N3P4 1428 aa14.67□□□□□ -0.06
PDGFC-202ENST00000422544 HECW1Q76N89 1606 aa14.67□□□□□ -0.06
PDGFC-202ENST00000422544 FYCO1Q9BQS8 1478 aa14.67□□□□□ -0.06
PDGFC-202ENST00000422544 WDR7Q9Y4E6 1490 aa14.67□□□□□ -0.06
PDGFC-202ENST00000422544 CDK11AQ9UQ88 783 aaPredicted RBP14.66□□□□□ -0.06
PDGFC-202ENST00000422544 CCDC18Q5T9S5 1454 aa14.63□□□□□ -0.07
PDGFC-202ENST00000422544 CFAP43Q8NDM7 1665 aa14.61□□□□□ -0.07
PDGFC-202ENST00000422544 TEX14Q8IWB6 1497 aa14.6□□□□□ -0.07
PDGFC-202ENST00000422544 ADAMTSL3P82987 1691 aa14.59□□□□□ -0.07
PDGFC-202ENST00000422544 LRRIQ1Q96JM4 1722 aa14.58□□□□□ -0.08
PDGFC-202ENST00000422544 TROQ12816 1431 aaPredicted RBP14.58□□□□□ -0.08
PDGFC-202ENST00000422544 MAGI3Q5TCQ9 1506 aa14.57□□□□□ -0.08
PDGFC-202ENST00000422544 APLP2Q06481 763 aa14.57□□□□□ -0.08
PDGFC-202ENST00000422544 CD109Q6YHK3 1445 aa14.56□□□□□ -0.08
PDGFC-202ENST00000422544 KANK4Q5T7N3 995 aaPredicted RBP14.55□□□□□ -0.08
PDGFC-202ENST00000422544 MTUS2Q5JR59 1369 aa14.55□□□□□ -0.08
PDGFC-202ENST00000422544 FBXO41Q8TF61 875 aa14.54□□□□□ -0.08
PDGFC-202ENST00000422544 TIAM1Q13009 1591 aa14.5□□□□□ -0.09
PDGFC-202ENST00000422544 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.5□□□□□ -0.09
PDGFC-202ENST00000422544 FRMPD1Q5SYB0 1578 aa14.49□□□□□ -0.09
PDGFC-202ENST00000422544 MAP3K1Q13233 1512 aa14.49□□□□□ -0.09
PDGFC-202ENST00000422544 ARAP3Q8WWN8 1544 aa14.49□□□□□ -0.09
PDGFC-202ENST00000422544 PTPRMP28827 1452 aa14.49□□□□□ -0.09
PDGFC-202ENST00000422544 BCORL1Q5H9F3 1711 aa14.49□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 73.8 ms