RNA–Protein interactions for RNA: ENST00000422245.5

SQSTM1-203, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-203ENST00000422245 IGF1RP08069 1367 aa20.12■□□□□ 0.81
SQSTM1-203ENST00000422245 JPH4Q96JJ6 628 aa20.1■□□□□ 0.81
SQSTM1-203ENST00000422245 KIAA0586Q9BVV6 1533 aa20.06■□□□□ 0.8
SQSTM1-203ENST00000422245 CARMIL1Q5VZK9 1371 aa20■□□□□ 0.79
SQSTM1-203ENST00000422245 KIF13AQ9H1H9 1805 aa19.92■□□□□ 0.78
SQSTM1-203ENST00000422245 ADCY10Q96PN6 1610 aa19.91■□□□□ 0.78
SQSTM1-203ENST00000422245 MAPKBP1O60336 1514 aa19.9■□□□□ 0.78
SQSTM1-203ENST00000422245 IQGAP2Q13576 1575 aa19.89■□□□□ 0.77
SQSTM1-203ENST00000422245 NPM1P06748 294 aaKnown RBP eCLIP19.88■□□□□ 0.77
SQSTM1-203ENST00000422245 CARMIL2Q6F5E8 1435 aa19.86■□□□□ 0.77
SQSTM1-203ENST00000422245 RAPGEF2Q9Y4G8 1499 aa19.85■□□□□ 0.77
SQSTM1-203ENST00000422245 ABCC10Q5T3U5 1492 aa19.84■□□□□ 0.77
SQSTM1-203ENST00000422245 PTPRGP23470 1445 aa19.84■□□□□ 0.77
SQSTM1-203ENST00000422245 TNIKQ9UKE5 1360 aa19.83■□□□□ 0.76
SQSTM1-203ENST00000422245 DIP2BQ9P265 1576 aa19.82■□□□□ 0.76
SQSTM1-203ENST00000422245 FAM69CQ0P6D2 419 aa19.78■□□□□ 0.76
SQSTM1-203ENST00000422245 UGGT2Q9NYU1 1516 aa19.76■□□□□ 0.75
SQSTM1-203ENST00000422245 DISP1Q96F81 1524 aa19.76■□□□□ 0.75
SQSTM1-203ENST00000422245 ABCC2Q92887 1545 aa19.74■□□□□ 0.75
SQSTM1-203ENST00000422245 UHRF1BP1LA0JNW5 1464 aa19.73■□□□□ 0.75
SQSTM1-203ENST00000422245 TTBK1Q5TCY1 1321 aaPredicted RBP19.72■□□□□ 0.75
SQSTM1-203ENST00000422245 CTTNBP2Q8WZ74 1663 aa19.71■□□□□ 0.75
SQSTM1-203ENST00000422245 KIAA0556O60303 1618 aa19.71■□□□□ 0.75
SQSTM1-203ENST00000422245 UACAQ9BZF9 1416 aa19.7■□□□□ 0.74
SQSTM1-203ENST00000422245 PRXQ9BXM0 1461 aa19.67■□□□□ 0.74
SQSTM1-203ENST00000422245 PLB1Q6P1J6 1458 aa19.67■□□□□ 0.74
SQSTM1-203ENST00000422245 ASXL2Q76L83 1435 aa19.65■□□□□ 0.74
SQSTM1-203ENST00000422245 AEBP2Q6ZN18 517 aaPredicted RBP19.64■□□□□ 0.73
SQSTM1-203ENST00000422245 TSPOAP1O95153 1857 aa19.63■□□□□ 0.73
SQSTM1-203ENST00000422245 GOLGA3Q08378 1498 aa19.63■□□□□ 0.73
SQSTM1-203ENST00000422245 GLI2P10070 1586 aa19.62■□□□□ 0.73
SQSTM1-203ENST00000422245 KDM5BQ9UGL1 1544 aa19.62■□□□□ 0.73
SQSTM1-203ENST00000422245 KDM6BO15054 1643 aa19.62■□□□□ 0.73
SQSTM1-203ENST00000422245 ZCCHC11Q5TAX3 1644 aaKnown RBP19.58■□□□□ 0.73
SQSTM1-203ENST00000422245 PPRC1Q5VV67 1664 aaKnown RBP19.53■□□□□ 0.72
SQSTM1-203ENST00000422245 EPRSP07814 1512 aaKnown RBP19.53■□□□□ 0.72
SQSTM1-203ENST00000422245 EEA1Q15075 1411 aa19.51■□□□□ 0.71
SQSTM1-203ENST00000422245 ABCA8O94911 1581 aa19.51■□□□□ 0.71
SQSTM1-203ENST00000422245 MAP3K4Q9Y6R4 1608 aa19.51■□□□□ 0.71
SQSTM1-203ENST00000422245 CSRNP3Q8WYN3 585 aa19.5■□□□□ 0.71
SQSTM1-203ENST00000422245 WDR7Q9Y4E6 1490 aa19.49■□□□□ 0.71
SQSTM1-203ENST00000422245 TEX14Q8IWB6 1497 aa19.47■□□□□ 0.71
SQSTM1-203ENST00000422245 FAM9AQ8IZU1 332 aaPredicted RBP19.43■□□□□ 0.7
SQSTM1-203ENST00000422245 SAMD9Q5K651 1589 aa19.43■□□□□ 0.7
SQSTM1-203ENST00000422245 CFAP43Q8NDM7 1665 aa19.4■□□□□ 0.7
SQSTM1-203ENST00000422245 MAGI3Q5TCQ9 1506 aa19.35■□□□□ 0.69
SQSTM1-203ENST00000422245 P3H3Q8IVL6 736 aa19.35■□□□□ 0.69
SQSTM1-203ENST00000422245 COL17A1Q9UMD9 1497 aaPredicted RBP19.35■□□□□ 0.69
SQSTM1-203ENST00000422245 CD109Q6YHK3 1445 aa19.34■□□□□ 0.69
SQSTM1-203ENST00000422245 KIF21BO75037 1637 aa19.33■□□□□ 0.69
SQSTM1-203ENST00000422245 RAPGEF6Q8TEU7 1601 aa19.33■□□□□ 0.68
SQSTM1-203ENST00000422245 ATP10BO94823 1461 aa19.31■□□□□ 0.68
SQSTM1-203ENST00000422245 KCNH8Q96L42 1107 aa19.31■□□□□ 0.68
SQSTM1-203ENST00000422245 KDM4FA0A1W2PPD8 638 aa19.29■□□□□ 0.68
SQSTM1-203ENST00000422245 ARID3CA6NKF2 412 aa19.28■□□□□ 0.68
SQSTM1-203ENST00000422245 EFCAB5A4FU69 1503 aa19.27■□□□□ 0.68
SQSTM1-203ENST00000422245 FHOD3Q2V2M9 1422 aa19.26■□□□□ 0.67
SQSTM1-203ENST00000422245 ABCA9Q8IUA7 1624 aa19.25■□□□□ 0.67
SQSTM1-203ENST00000422245 NUP153P49790 1475 aaKnown RBP19.24■□□□□ 0.67
SQSTM1-203ENST00000422245 ADGRL1O94910 1474 aa19.23■□□□□ 0.67
SQSTM1-203ENST00000422245 RANGAP1P46060 587 aaPredicted RBP19.23■□□□□ 0.67
SQSTM1-203ENST00000422245 ARAP3Q8WWN8 1544 aa19.2■□□□□ 0.66
SQSTM1-203ENST00000422245 CHIC1Q5VXU3 224 aa19.19■□□□□ 0.66
SQSTM1-203ENST00000422245 PHLDB1Q86UU1 1377 aa19.19■□□□□ 0.66
SQSTM1-203ENST00000422245 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.18■□□□□ 0.66
SQSTM1-203ENST00000422245 HNRNPUL2Q1KMD3 747 aaKnown RBP19.18■□□□□ 0.66
SQSTM1-203ENST00000422245 NEO1Q92859 1461 aa19.15■□□□□ 0.66
SQSTM1-203ENST00000422245 UBTFP17480 764 aaKnown RBP19.12■□□□□ 0.65
SQSTM1-203ENST00000422245 PLEKHD1A6NEE1 506 aa19.1■□□□□ 0.65
SQSTM1-203ENST00000422245 FMN1Q68DA7 1419 aa19.08■□□□□ 0.65
SQSTM1-203ENST00000422245 CFAP74Q9C0B2 1584 aa19.06■□□□□ 0.64
SQSTM1-203ENST00000422245 ARHGAP35Q9NRY4 1499 aa19.06■□□□□ 0.64
SQSTM1-203ENST00000422245 HECW1Q76N89 1606 aa19.06■□□□□ 0.64
SQSTM1-203ENST00000422245 EHMT2Q96KQ7 1210 aa19.05■□□□□ 0.64
SQSTM1-203ENST00000422245 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.05■□□□□ 0.646e-7■■■■□ 21.5
SQSTM1-203ENST00000422245 CDK13Q14004 1512 aaKnown RBP19.04■□□□□ 0.64
SQSTM1-203ENST00000422245 FRMPD1Q5SYB0 1578 aa19.03■□□□□ 0.64
SQSTM1-203ENST00000422245 TTC37Q6PGP7 1564 aa19.02■□□□□ 0.64
SQSTM1-203ENST00000422245 RAPGEF3O95398 923 aa19.02■□□□□ 0.64
SQSTM1-203ENST00000422245 FANCAO15360 1455 aa19.01■□□□□ 0.63
SQSTM1-203ENST00000422245 DENND4BO75064 1496 aaPredicted RBP18.99■□□□□ 0.63
SQSTM1-203ENST00000422245 AKNAQ7Z591 1439 aa18.99■□□□□ 0.63
SQSTM1-203ENST00000422245 RICTORQ6R327 1708 aa18.98■□□□□ 0.63
SQSTM1-203ENST00000422245 ARHGEF40Q8TER5 1519 aa18.96■□□□□ 0.63
SQSTM1-203ENST00000422245 HECW2Q9P2P5 1572 aa18.95■□□□□ 0.62
SQSTM1-203ENST00000422245 CDK11AQ9UQ88 783 aaPredicted RBP18.95■□□□□ 0.62
SQSTM1-203ENST00000422245 ATP1B4Q9UN42 357 aaPredicted RBP18.94■□□□□ 0.62
SQSTM1-203ENST00000422245 ADAMTSL3P82987 1691 aa18.94■□□□□ 0.62
SQSTM1-203ENST00000422245 ZMYM4Q5VZL5 1548 aa18.94■□□□□ 0.62
SQSTM1-203ENST00000422245 MYO5CQ9NQX4 1742 aa18.93■□□□□ 0.62
SQSTM1-203ENST00000422245 PLCH2O75038 1416 aa18.92■□□□□ 0.62
SQSTM1-203ENST00000422245 KIF14Q15058 1648 aa18.92■□□□□ 0.62
SQSTM1-203ENST00000422245 BCORL1Q5H9F3 1711 aa18.91■□□□□ 0.62
SQSTM1-203ENST00000422245 TROQ12816 1431 aaPredicted RBP18.91■□□□□ 0.62
SQSTM1-203ENST00000422245 CLIP1P30622 1438 aa18.9■□□□□ 0.62
SQSTM1-203ENST00000422245 LRRIQ1Q96JM4 1722 aa18.89■□□□□ 0.61
SQSTM1-203ENST00000422245 POGZQ7Z3K3 1410 aa18.89■□□□□ 0.61
SQSTM1-203ENST00000422245 MAGI2Q86UL8 1455 aa18.88■□□□□ 0.61
SQSTM1-203ENST00000422245 PTPRMP28827 1452 aa18.87■□□□□ 0.61
SQSTM1-203ENST00000422245 ARID4BQ4LE39 1312 aaPredicted RBP18.87■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms