RNA–Protein interactions for RNA: ENST00000421999.7

CMSS1-201, Transcript of cms1 ribosomal small subunit homolog (yeast), humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CMSS1, Length 4,330 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMSS1-201ENST00000421999 TOPBP1Q92547 1522 aa14.02□□□□□ -0.17
CMSS1-201ENST00000421999 ZNF326Q5BKZ1 582 aaKnown RBP14.01□□□□□ -0.17
CMSS1-201ENST00000421999 MRC2Q9UBG0 1479 aa13.99□□□□□ -0.17
CMSS1-201ENST00000421999 BCANQ96GW7 911 aa13.99□□□□□ -0.17
CMSS1-201ENST00000421999 POLA1P09884 1462 aaPredicted RBP13.98□□□□□ -0.17
CMSS1-201ENST00000421999 PELP1Q8IZL8 1130 aaKnown RBP13.98□□□□□ -0.17
CMSS1-201ENST00000421999 LAMC3Q9Y6N6 1575 aa13.98□□□□□ -0.17
CMSS1-201ENST00000421999 FHAD1B1AJZ9 1412 aa13.97□□□□□ -0.17
CMSS1-201ENST00000421999 TOP2BQ02880 1626 aa13.97□□□□□ -0.17
CMSS1-201ENST00000421999 VPS8Q8N3P4 1428 aa13.97□□□□□ -0.17
CMSS1-201ENST00000421999 JPH4Q96JJ6 628 aa13.96□□□□□ -0.17
CMSS1-201ENST00000421999 KANK4Q5T7N3 995 aaPredicted RBP13.94□□□□□ -0.18
CMSS1-201ENST00000421999 YTHDC1Q96MU7 727 aaKnown RBP13.94□□□□□ -0.18
CMSS1-201ENST00000421999 FHOD3Q2V2M9 1422 aa13.93□□□□□ -0.18
CMSS1-201ENST00000421999 CARMIL2Q6F5E8 1435 aa13.92□□□□□ -0.18
CMSS1-201ENST00000421999 DNMBPQ6XZF7 1577 aa13.91□□□□□ -0.18
CMSS1-201ENST00000421999 TSPY4P0CV99 314 aa13.9□□□□□ -0.18
CMSS1-201ENST00000421999 TSPY10P0CW01 314 aa13.9□□□□□ -0.18
CMSS1-201ENST00000421999 CFDP1Q9UEE9 299 aaPredicted RBP13.89□□□□□ -0.19
CMSS1-201ENST00000421999 CENPBP07199 599 aaPredicted RBP13.88□□□□□ -0.19
CMSS1-201ENST00000421999 RRP7BPQ9NSQ0 103 aa13.88□□□□□ -0.19
CMSS1-201ENST00000421999 CHGAP10645 457 aaKnown RBP13.87□□□□□ -0.19
CMSS1-201ENST00000421999 GRIN2BQ13224 1484 aa13.87□□□□□ -0.19
CMSS1-201ENST00000421999 URB2Q14146 1524 aaKnown RBP13.86□□□□□ -0.19
CMSS1-201ENST00000421999 FMN1Q68DA7 1419 aa13.86□□□□□ -0.19
CMSS1-201ENST00000421999 IFT140Q96RY7 1462 aa13.86□□□□□ -0.19
CMSS1-201ENST00000421999 STAG3Q9UJ98 1225 aa13.85□□□□□ -0.19
CMSS1-201ENST00000421999 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.84□□□□□ -0.192e-10■■■■□ 23
CMSS1-201ENST00000421999 PRXQ9BXM0 1461 aa13.82□□□□□ -0.2
CMSS1-201ENST00000421999 TRHP20396 242 aaPredicted RBP13.81□□□□□ -0.2
CMSS1-201ENST00000421999 OSCARQ8IYS5 282 aa13.81□□□□□ -0.2
CMSS1-201ENST00000421999 ABCA10Q8WWZ4 1543 aa13.8□□□□□ -0.2
CMSS1-201ENST00000421999 CCNB3Q8WWL7 1395 aa13.79□□□□□ -0.2
CMSS1-201ENST00000421999 KIF21BO75037 1637 aa13.76□□□□□ -0.21
CMSS1-201ENST00000421999 SNAPC4Q5SXM2 1469 aa13.76□□□□□ -0.21
CMSS1-201ENST00000421999 PTPRGP23470 1445 aa13.75□□□□□ -0.21
CMSS1-201ENST00000421999 NEFLP07196 543 aa13.75□□□□□ -0.21
CMSS1-201ENST00000421999 ERICH3Q5RHP9 1530 aa13.74□□□□□ -0.21
CMSS1-201ENST00000421999 ZNF608Q9ULD9 1512 aaPredicted RBP13.74□□□□□ -0.21
CMSS1-201ENST00000421999 ARID4BQ4LE39 1312 aaPredicted RBP13.71□□□□□ -0.21
CMSS1-201ENST00000421999 CYB5RLQ6IPT4 315 aa13.71□□□□□ -0.21
CMSS1-201ENST00000421999 ARHGAP35Q9NRY4 1499 aa13.71□□□□□ -0.21
CMSS1-201ENST00000421999 BIVM-ERCC5R4GMW8 1640 aa13.71□□□□□ -0.21
CMSS1-201ENST00000421999 ARAP1Q96P48 1450 aa13.69□□□□□ -0.22
CMSS1-201ENST00000421999 MYT1Q01538 1121 aa13.69□□□□□ -0.22
CMSS1-201ENST00000421999 TONSLQ96HA7 1378 aa13.68□□□□□ -0.22
CMSS1-201ENST00000421999 DIEXFQ68CQ4 756 aaKnown RBP13.68□□□□□ -0.22
CMSS1-201ENST00000421999 SENP3Q9H4L4 574 aaPredicted RBP13.66□□□□□ -0.22
CMSS1-201ENST00000421999 PRG4Q92954 1404 aaPredicted RBP13.64□□□□□ -0.23
CMSS1-201ENST00000421999 ZNF316A6NFI3 1004 aaPredicted RBP13.62□□□□□ -0.23
CMSS1-201ENST00000421999 KIF21AQ7Z4S6 1674 aa13.62□□□□□ -0.23
CMSS1-201ENST00000421999 EFCAB2Q5VUJ9 269 aa13.61□□□□□ -0.23
CMSS1-201ENST00000421999 CCDC18Q5T9S5 1454 aa13.6□□□□□ -0.23
CMSS1-201ENST00000421999 HNRNPMP52272 730 aaKnown RBP eCLIP13.6□□□□□ -0.237e-7■■■■■ 41.5
CMSS1-201ENST00000421999 KDM2AQ9Y2K7 1162 aa13.59□□□□□ -0.23
CMSS1-201ENST00000421999 SYNJ2O15056 1496 aa13.59□□□□□ -0.23
CMSS1-201ENST00000421999 KIAA0586Q9BVV6 1533 aa13.58□□□□□ -0.24
CMSS1-201ENST00000421999 SIN3AQ96ST3 1273 aa13.58□□□□□ -0.24
CMSS1-201ENST00000421999 GRIN2AQ12879 1464 aa13.57□□□□□ -0.24
CMSS1-201ENST00000421999 MAGI1Q96QZ7 1491 aaPredicted RBP13.56□□□□□ -0.24
CMSS1-201ENST00000421999 CASKIN1Q8WXD9 1431 aa13.56□□□□□ -0.24
CMSS1-201ENST00000421999 PRDM2Q13029 1718 aa13.55□□□□□ -0.24
CMSS1-201ENST00000421999 SLC24A1O60721 1099 aa13.55□□□□□ -0.24
CMSS1-201ENST00000421999 CUL7Q14999 1698 aa13.54□□□□□ -0.24
CMSS1-201ENST00000421999 RGL3Q3MIN7 710 aa13.54□□□□□ -0.24
CMSS1-201ENST00000421999 SETD5Q9C0A6 1442 aa13.54□□□□□ -0.24
CMSS1-201ENST00000421999 MLECQ14165 292 aa13.54□□□□□ -0.24
CMSS1-201ENST00000421999 PPP1R15AO75807 674 aaPredicted RBP13.53□□□□□ -0.24
CMSS1-201ENST00000421999 EFCAB5A4FU69 1503 aa13.52□□□□□ -0.24
CMSS1-201ENST00000421999 ZNF644Q9H582 1327 aaPredicted RBP13.52□□□□□ -0.25
CMSS1-201ENST00000421999 HIRIP3Q9BW71 556 aaPredicted RBP13.52□□□□□ -0.25
CMSS1-201ENST00000421999 RAB3GAP2Q9H2M9 1393 aa13.51□□□□□ -0.25
CMSS1-201ENST00000421999 LRRC9Q6ZRR7 1453 aa13.51□□□□□ -0.25
CMSS1-201ENST00000421999 PHLDB1Q86UU1 1377 aa13.51□□□□□ -0.25
CMSS1-201ENST00000421999 IQGAP2Q13576 1575 aa13.51□□□□□ -0.25
CMSS1-201ENST00000421999 FOXD1Q16676 465 aa13.5□□□□□ -0.25
CMSS1-201ENST00000421999 ANP32CO43423 234 aa13.5□□□□□ -0.25
CMSS1-201ENST00000421999 FYCO1Q9BQS8 1478 aa13.49□□□□□ -0.25
CMSS1-201ENST00000421999 WDR62O43379 1518 aa13.48□□□□□ -0.25
CMSS1-201ENST00000421999 GGT6Q6P531 493 aa13.48□□□□□ -0.25
CMSS1-201ENST00000421999 ACIN1Q9UKV3 1341 aaKnown RBP13.47□□□□□ -0.25
CMSS1-201ENST00000421999 C14orf37Q86TY3 774 aa13.46□□□□□ -0.25
CMSS1-201ENST00000421999 ANKRD30AQ9BXX3 1397 aa13.46□□□□□ -0.25
CMSS1-201ENST00000421999 SPAG9O60271 1321 aaKnown RBP13.45□□□□□ -0.26
CMSS1-201ENST00000421999 NEFMP07197 916 aa13.45□□□□□ -0.26
CMSS1-201ENST00000421999 PLEKHG5O94827 1062 aa13.44□□□□□ -0.26
CMSS1-201ENST00000421999 PKD2Q13563 968 aa13.44□□□□□ -0.26
CMSS1-201ENST00000421999 RSPH4AQ5TD94 716 aa13.44□□□□□ -0.26
CMSS1-201ENST00000421999 NCOA2Q15596 1464 aa13.44□□□□□ -0.26
CMSS1-201ENST00000421999 FGD6Q6ZV73 1430 aa13.44□□□□□ -0.26
CMSS1-201ENST00000421999 MYOM3Q5VTT5 1437 aa13.43□□□□□ -0.26
CMSS1-201ENST00000421999 SCAF1Q9H7N4 1312 aaKnown RBP13.43□□□□□ -0.26
CMSS1-201ENST00000421999 DDX10Q13206 875 aaKnown RBP13.43□□□□□ -0.26
CMSS1-201ENST00000421999 PLB1Q6P1J6 1458 aa13.43□□□□□ -0.26
CMSS1-201ENST00000421999 MPHOSPH9Q99550 1183 aa13.43□□□□□ -0.26
CMSS1-201ENST00000421999 FAM69CQ0P6D2 419 aa13.43□□□□□ -0.26
CMSS1-201ENST00000421999 NUP155O75694 1391 aa13.42□□□□□ -0.26
CMSS1-201ENST00000421999 KIF3BO15066 747 aa13.42□□□□□ -0.26
CMSS1-201ENST00000421999 CLSPNQ9HAW4 1339 aa13.41□□□□□ -0.26
CMSS1-201ENST00000421999 CDK13Q14004 1512 aaKnown RBP13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms