RNA–Protein interactions for RNA: ENST00000420482.5

PTPN4-202, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 568 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-202ENST00000420482 PRG4Q92954 1404 aaPredicted RBP36.85■■■■□ 3.49
PTPN4-202ENST00000420482 JPH4Q96JJ6 628 aa36.83■■■■□ 3.49
PTPN4-202ENST00000420482 KIF13AQ9H1H9 1805 aa36.79■■■■□ 3.48
PTPN4-202ENST00000420482 KIAA0586Q9BVV6 1533 aa36.69■■■■□ 3.46
PTPN4-202ENST00000420482 CARMIL1Q5VZK9 1371 aa36.66■■■■□ 3.46
PTPN4-202ENST00000420482 ADCY10Q96PN6 1610 aa36.56■■■■□ 3.44
PTPN4-202ENST00000420482 MAPKBP1O60336 1514 aa36.54■■■■□ 3.44
PTPN4-202ENST00000420482 AEBP2Q6ZN18 517 aaPredicted RBP36.49■■■■□ 3.43
PTPN4-202ENST00000420482 NPM1P06748 294 aaKnown RBP eCLIP36.48■■■■□ 3.43
PTPN4-202ENST00000420482 ABCC10Q5T3U5 1492 aa36.47■■■■□ 3.43
PTPN4-202ENST00000420482 DIP2BQ9P265 1576 aa36.45■■■■□ 3.43
PTPN4-202ENST00000420482 CARMIL2Q6F5E8 1435 aa36.4■■■■□ 3.42
PTPN4-202ENST00000420482 RAPGEF2Q9Y4G8 1499 aa36.38■■■■□ 3.41
PTPN4-202ENST00000420482 IQGAP2Q13576 1575 aa36.38■■■■□ 3.41
PTPN4-202ENST00000420482 FAM69CQ0P6D2 419 aa36.32■■■■□ 3.4
PTPN4-202ENST00000420482 PTPRGP23470 1445 aa36.3■■■■□ 3.4
PTPN4-202ENST00000420482 TNIKQ9UKE5 1360 aa36.27■■■■□ 3.4
PTPN4-202ENST00000420482 TSPOAP1O95153 1857 aa36.2■■■■□ 3.39
PTPN4-202ENST00000420482 TTBK1Q5TCY1 1321 aaPredicted RBP36.2■■■■□ 3.39
PTPN4-202ENST00000420482 KDM6BO15054 1643 aa36.16■■■■□ 3.38
PTPN4-202ENST00000420482 ABCC2Q92887 1545 aa36.13■■■■□ 3.38
PTPN4-202ENST00000420482 UGGT2Q9NYU1 1516 aa36.13■■■■□ 3.38
PTPN4-202ENST00000420482 DISP1Q96F81 1524 aa36.11■■■■□ 3.37
PTPN4-202ENST00000420482 UHRF1BP1LA0JNW5 1464 aa36.07■■■■□ 3.37
PTPN4-202ENST00000420482 CTTNBP2Q8WZ74 1663 aa36.07■■■■□ 3.36
PTPN4-202ENST00000420482 UACAQ9BZF9 1416 aa36.03■■■■□ 3.36
PTPN4-202ENST00000420482 PRXQ9BXM0 1461 aa36.02■■■■□ 3.36
PTPN4-202ENST00000420482 KIAA0556O60303 1618 aa36.01■■■■□ 3.36
PTPN4-202ENST00000420482 GLI2P10070 1586 aa36■■■■□ 3.35
PTPN4-202ENST00000420482 PLB1Q6P1J6 1458 aa35.99■■■■□ 3.35
PTPN4-202ENST00000420482 ASXL2Q76L83 1435 aa35.99■■■■□ 3.35
PTPN4-202ENST00000420482 PPRC1Q5VV67 1664 aaKnown RBP35.98■■■■□ 3.35
PTPN4-202ENST00000420482 GOLGA3Q08378 1498 aa35.97■■■■□ 3.35
PTPN4-202ENST00000420482 KDM5BQ9UGL1 1544 aa35.9■■■■□ 3.34
PTPN4-202ENST00000420482 ZCCHC11Q5TAX3 1644 aaKnown RBP35.88■■■■□ 3.33
PTPN4-202ENST00000420482 CSRNP3Q8WYN3 585 aa35.87■■■■□ 3.33
PTPN4-202ENST00000420482 EEA1Q15075 1411 aa35.84■■■■□ 3.33
PTPN4-202ENST00000420482 FAM9AQ8IZU1 332 aaPredicted RBP35.83■■■■□ 3.33
PTPN4-202ENST00000420482 MAP3K4Q9Y6R4 1608 aa35.83■■■■□ 3.33
PTPN4-202ENST00000420482 EPRSP07814 1512 aaKnown RBP35.8■■■■□ 3.32
PTPN4-202ENST00000420482 KDM4FA0A1W2PPD8 638 aa35.71■■■■□ 3.31
PTPN4-202ENST00000420482 TEX14Q8IWB6 1497 aa35.66■■■■□ 3.3
PTPN4-202ENST00000420482 ABCA8O94911 1581 aa35.65■■■■□ 3.3
PTPN4-202ENST00000420482 WDR7Q9Y4E6 1490 aa35.65■■■■□ 3.3
PTPN4-202ENST00000420482 COL17A1Q9UMD9 1497 aaPredicted RBP35.6■■■■□ 3.29
PTPN4-202ENST00000420482 CFAP43Q8NDM7 1665 aa35.56■■■■□ 3.28
PTPN4-202ENST00000420482 P3H3Q8IVL6 736 aa35.55■■■■□ 3.28
PTPN4-202ENST00000420482 SAMD9Q5K651 1589 aa35.52■■■■□ 3.28
PTPN4-202ENST00000420482 ADGRL1O94910 1474 aa35.48■■■■□ 3.27
PTPN4-202ENST00000420482 KIF21BO75037 1637 aa35.46■■■■□ 3.27
PTPN4-202ENST00000420482 MAGI3Q5TCQ9 1506 aa35.45■■■■□ 3.27
PTPN4-202ENST00000420482 KCNH8Q96L42 1107 aa35.43■■■■□ 3.26
PTPN4-202ENST00000420482 RANGAP1P46060 587 aaPredicted RBP35.39■■■■□ 3.26
PTPN4-202ENST00000420482 CD109Q6YHK3 1445 aa35.39■■■■□ 3.26
PTPN4-202ENST00000420482 CHIC1Q5VXU3 224 aa35.38■■■■□ 3.25
PTPN4-202ENST00000420482 RAPGEF6Q8TEU7 1601 aa35.36■■■■□ 3.25
PTPN4-202ENST00000420482 ATP10BO94823 1461 aa35.35■■■■□ 3.25
PTPN4-202ENST00000420482 ARID3CA6NKF2 412 aa35.34■■■■□ 3.25
PTPN4-202ENST00000420482 EFCAB5A4FU69 1503 aa35.31■■■■□ 3.24
PTPN4-202ENST00000420482 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP35.29■■■■□ 3.24
PTPN4-202ENST00000420482 HNRNPUL2Q1KMD3 747 aaKnown RBP35.29■■■■□ 3.24
PTPN4-202ENST00000420482 FHOD3Q2V2M9 1422 aa35.28■■■■□ 3.24
PTPN4-202ENST00000420482 UBTFP17480 764 aaKnown RBP35.24■■■■□ 3.23
PTPN4-202ENST00000420482 ABCA9Q8IUA7 1624 aa35.22■■■■□ 3.23
PTPN4-202ENST00000420482 NUP153P49790 1475 aaKnown RBP35.19■■■■□ 3.22
PTPN4-202ENST00000420482 ARAP3Q8WWN8 1544 aa35.17■■■■□ 3.22
PTPN4-202ENST00000420482 EHMT2Q96KQ7 1210 aa35.13■■■■□ 3.21
PTPN4-202ENST00000420482 PHLDB1Q86UU1 1377 aa35.1■■■■□ 3.21
PTPN4-202ENST00000420482 HECW2Q9P2P5 1572 aa35.09■■■■□ 3.21
PTPN4-202ENST00000420482 PLEKHD1A6NEE1 506 aa35.09■■■■□ 3.21
PTPN4-202ENST00000420482 FMN1Q68DA7 1419 aa35.02■■■■□ 3.2
PTPN4-202ENST00000420482 NEO1Q92859 1461 aa35■■■■□ 3.19
PTPN4-202ENST00000420482 FRMPD1Q5SYB0 1578 aa34.93■■■■□ 3.18
PTPN4-202ENST00000420482 ARHGAP35Q9NRY4 1499 aa34.93■■■■□ 3.18
PTPN4-202ENST00000420482 ATP1B4Q9UN42 357 aaPredicted RBP34.91■■■■□ 3.18
PTPN4-202ENST00000420482 HECW1Q76N89 1606 aa34.9■■■■□ 3.18
PTPN4-202ENST00000420482 ADAMTSL3P82987 1691 aa34.88■■■■□ 3.17
PTPN4-202ENST00000420482 CDK13Q14004 1512 aaKnown RBP34.86■■■■□ 3.17
PTPN4-202ENST00000420482 CDK11AQ9UQ88 783 aaPredicted RBP34.85■■■■□ 3.17
PTPN4-202ENST00000420482 CFAP74Q9C0B2 1584 aa34.83■■■■□ 3.17
PTPN4-202ENST00000420482 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP34.83■■■■□ 3.17
PTPN4-202ENST00000420482 RICTORQ6R327 1708 aa34.82■■■■□ 3.16
PTPN4-202ENST00000420482 RAPGEF3O95398 923 aa34.81■■■■□ 3.16
PTPN4-202ENST00000420482 BCORL1Q5H9F3 1711 aa34.8■■■■□ 3.16
PTPN4-202ENST00000420482 FANCAO15360 1455 aa34.78■■■■□ 3.16
PTPN4-202ENST00000420482 ARHGEF40Q8TER5 1519 aa34.77■■■■□ 3.16
PTPN4-202ENST00000420482 TTC37Q6PGP7 1564 aa34.76■■■■□ 3.16
PTPN4-202ENST00000420482 ILDR1Q86SU0 546 aaPredicted RBP34.76■■■■□ 3.16
PTPN4-202ENST00000420482 AKNAQ7Z591 1439 aa34.74■■■■□ 3.15
PTPN4-202ENST00000420482 DENND4BO75064 1496 aaPredicted RBP34.73■■■■□ 3.15
PTPN4-202ENST00000420482 PTPRMP28827 1452 aa34.73■■■■□ 3.15
PTPN4-202ENST00000420482 MADDQ8WXG6 1647 aa34.7■■■■□ 3.14
PTPN4-202ENST00000420482 CLIP1P30622 1438 aa34.67■■■■□ 3.14
PTPN4-202ENST00000420482 PLCH2O75038 1416 aa34.66■■■■□ 3.14
PTPN4-202ENST00000420482 ZMYM4Q5VZL5 1548 aa34.65■■■■□ 3.14
PTPN4-202ENST00000420482 KIF14Q15058 1648 aa34.64■■■■□ 3.14
PTPN4-202ENST00000420482 TROQ12816 1431 aaPredicted RBP34.63■■■■□ 3.13
PTPN4-202ENST00000420482 CASKIN1Q8WXD9 1431 aa34.61■■■■□ 3.13
PTPN4-202ENST00000420482 CCDC18Q5T9S5 1454 aa34.6■■■■□ 3.13
PTPN4-202ENST00000420482 MYO5CQ9NQX4 1742 aa34.6■■■■□ 3.13
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms