RNA–Protein interactions for RNA: ENST00000418518.2

LINCMD1-201, Transcript of long intergenic non-protein coding RNA, muscle differentiation 1, humanhuman

TSL 5 BASIC

Gene LINCMD1, Length 462 nt, Biotype lincRNA, Subcellular localisation Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINCMD1-201ENST00000418518 ERCC6Q03468 1493 aa14.01□□□□□ -0.17
LINCMD1-201ENST00000418518 FHAD1B1AJZ9 1412 aa14.01□□□□□ -0.17
LINCMD1-201ENST00000418518 EIF4G3O43432 1585 aaKnown RBP14□□□□□ -0.17
LINCMD1-201ENST00000418518 PPARGC1BQ86YN6 1023 aaKnown RBP14□□□□□ -0.17
LINCMD1-201ENST00000418518 AQRO60306 1485 aaKnown RBP eCLIP13.99□□□□□ -0.17
LINCMD1-201ENST00000418518 PCF11O94913 1555 aaKnown RBP13.98□□□□□ -0.17
LINCMD1-201ENST00000418518 TIAM1Q13009 1591 aa13.98□□□□□ -0.17
LINCMD1-201ENST00000418518 ZNF608Q9ULD9 1512 aaPredicted RBP13.95□□□□□ -0.18
LINCMD1-201ENST00000418518 FYCO1Q9BQS8 1478 aa13.95□□□□□ -0.18
LINCMD1-201ENST00000418518 IQGAP2Q13576 1575 aa13.94□□□□□ -0.18
LINCMD1-201ENST00000418518 APLP2Q06481 763 aa13.93□□□□□ -0.18
LINCMD1-201ENST00000418518 MAGI1Q96QZ7 1491 aaPredicted RBP13.92□□□□□ -0.18
LINCMD1-201ENST00000418518 CASKIN1Q8WXD9 1431 aa13.91□□□□□ -0.18
LINCMD1-201ENST00000418518 RANGAP1P46060 587 aaPredicted RBP13.91□□□□□ -0.18
LINCMD1-201ENST00000418518 ZEB1P37275 1124 aaPredicted RBP13.9□□□□□ -0.18
LINCMD1-201ENST00000418518 SNAPC4Q5SXM2 1469 aa13.9□□□□□ -0.18
LINCMD1-201ENST00000418518 UGGT2Q9NYU1 1516 aa13.9□□□□□ -0.19
LINCMD1-201ENST00000418518 FHOD3Q2V2M9 1422 aa13.9□□□□□ -0.19
LINCMD1-201ENST00000418518 FMN1Q68DA7 1419 aa13.9□□□□□ -0.19
LINCMD1-201ENST00000418518 RRBP1Q9P2E9 1410 aaKnown RBP13.89□□□□□ -0.19
LINCMD1-201ENST00000418518 LRRIQ1Q96JM4 1722 aa13.88□□□□□ -0.19
LINCMD1-201ENST00000418518 GRIN2AQ12879 1464 aa13.87□□□□□ -0.19
LINCMD1-201ENST00000418518 LRRC9Q6ZRR7 1453 aa13.87□□□□□ -0.19
LINCMD1-201ENST00000418518 KANK4Q5T7N3 995 aaPredicted RBP13.84□□□□□ -0.19
LINCMD1-201ENST00000418518 KIAA0586Q9BVV6 1533 aa13.84□□□□□ -0.19
LINCMD1-201ENST00000418518 SYNJ2O15056 1496 aa13.83□□□□□ -0.2
LINCMD1-201ENST00000418518 TTBK1Q5TCY1 1321 aaPredicted RBP13.83□□□□□ -0.2
LINCMD1-201ENST00000418518 CEP170Q5SW79 1584 aa13.8□□□□□ -0.2
LINCMD1-201ENST00000418518 KIAA0556O60303 1618 aa13.8□□□□□ -0.2
LINCMD1-201ENST00000418518 HECW1Q76N89 1606 aa13.8□□□□□ -0.2
LINCMD1-201ENST00000418518 NUP160Q12769 1436 aa13.78□□□□□ -0.2
LINCMD1-201ENST00000418518 DISP1Q96F81 1524 aa13.76□□□□□ -0.21
LINCMD1-201ENST00000418518 CCDC18Q5T9S5 1454 aa13.76□□□□□ -0.21
LINCMD1-201ENST00000418518 EHBP1L1Q8N3D4 1523 aa13.75□□□□□ -0.21
LINCMD1-201ENST00000418518 CCNB3Q8WWL7 1395 aa13.75□□□□□ -0.21
LINCMD1-201ENST00000418518 P3H3Q8IVL6 736 aa13.73□□□□□ -0.21
LINCMD1-201ENST00000418518 SUPT6HQ7KZ85 1726 aaKnown RBP13.73□□□□□ -0.21
LINCMD1-201ENST00000418518 ARHGEF11O15085 1522 aa13.72□□□□□ -0.21
LINCMD1-201ENST00000418518 PHLDB1Q86UU1 1377 aa13.71□□□□□ -0.22
LINCMD1-201ENST00000418518 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.71□□□□□ -0.22
LINCMD1-201ENST00000418518 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.7□□□□□ -0.22
LINCMD1-201ENST00000418518 CHD1O14646 1710 aa13.7□□□□□ -0.22
LINCMD1-201ENST00000418518 RAPGEF6Q8TEU7 1601 aa13.69□□□□□ -0.22
LINCMD1-201ENST00000418518 EPRSP07814 1512 aaKnown RBP13.68□□□□□ -0.22
LINCMD1-201ENST00000418518 CCER1Q8TC90 406 aaPredicted RBP13.67□□□□□ -0.22
LINCMD1-201ENST00000418518 MAGI3Q5TCQ9 1506 aa13.67□□□□□ -0.22
LINCMD1-201ENST00000418518 HNRNPUL2Q1KMD3 747 aaKnown RBP13.65□□□□□ -0.22
LINCMD1-201ENST00000418518 SHROOM2Q13796 1616 aa13.64□□□□□ -0.23
LINCMD1-201ENST00000418518 NCOA2Q15596 1464 aa13.64□□□□□ -0.23
LINCMD1-201ENST00000418518 FGD6Q6ZV73 1430 aa13.64□□□□□ -0.23
LINCMD1-201ENST00000418518 MTUS2Q5JR59 1369 aa13.63□□□□□ -0.23
LINCMD1-201ENST00000418518 CHMP7Q8WUX9 453 aaPredicted RBP13.63□□□□□ -0.23
LINCMD1-201ENST00000418518 NUP153P49790 1475 aaKnown RBP13.62□□□□□ -0.23
LINCMD1-201ENST00000418518 CDK13Q14004 1512 aaKnown RBP13.61□□□□□ -0.23
LINCMD1-201ENST00000418518 MYOM3Q5VTT5 1437 aa13.61□□□□□ -0.23
LINCMD1-201ENST00000418518 CARMIL2Q6F5E8 1435 aa13.61□□□□□ -0.23
LINCMD1-201ENST00000418518 CLSPNQ9HAW4 1339 aa13.61□□□□□ -0.23
LINCMD1-201ENST00000418518 ADCY10Q96PN6 1610 aa13.61□□□□□ -0.23
LINCMD1-201ENST00000418518 ABCA8O94911 1581 aa13.6□□□□□ -0.23
LINCMD1-201ENST00000418518 TCOF1Q13428 1488 aaKnown RBP13.59□□□□□ -0.23
LINCMD1-201ENST00000418518 PTPN23Q9H3S7 1636 aa13.58□□□□□ -0.24
LINCMD1-201ENST00000418518 DHX57Q6P158 1386 aaKnown RBP13.57□□□□□ -0.24
LINCMD1-201ENST00000418518 ATP1B4Q9UN42 357 aaPredicted RBP13.56□□□□□ -0.24
LINCMD1-201ENST00000418518 MIA2Q96PC5 1412 aa13.54□□□□□ -0.24
LINCMD1-201ENST00000418518 CLASP1Q7Z460 1538 aa13.54□□□□□ -0.24
LINCMD1-201ENST00000418518 JPH4Q96JJ6 628 aa13.53□□□□□ -0.24
LINCMD1-201ENST00000418518 SETD5Q9C0A6 1442 aa13.53□□□□□ -0.24
LINCMD1-201ENST00000418518 GCC2Q8IWJ2 1684 aa13.53□□□□□ -0.24
LINCMD1-201ENST00000418518 ITSN2Q9NZM3 1697 aa13.53□□□□□ -0.24
LINCMD1-201ENST00000418518 PLB1Q6P1J6 1458 aa13.52□□□□□ -0.25
LINCMD1-201ENST00000418518 TROQ12816 1431 aaPredicted RBP13.5□□□□□ -0.25
LINCMD1-201ENST00000418518 RAB3GAP2Q9H2M9 1393 aa13.5□□□□□ -0.25
LINCMD1-201ENST00000418518 AKNAQ7Z591 1439 aa13.49□□□□□ -0.25
LINCMD1-201ENST00000418518 FBLN2P98095 1184 aa13.49□□□□□ -0.25
LINCMD1-201ENST00000418518 HFM1A2PYH4 1435 aa13.48□□□□□ -0.25
LINCMD1-201ENST00000418518 PRG4Q92954 1404 aaPredicted RBP13.48□□□□□ -0.25
LINCMD1-201ENST00000418518 MAPKBP1O60336 1514 aa13.48□□□□□ -0.25
LINCMD1-201ENST00000418518 PTPRKQ15262 1439 aa13.47□□□□□ -0.25
LINCMD1-201ENST00000418518 DNMT1P26358 1616 aaKnown RBP13.46□□□□□ -0.25
LINCMD1-201ENST00000418518 KIF14Q15058 1648 aa13.46□□□□□ -0.25
LINCMD1-201ENST00000418518 FAM50AQ14320 339 aaKnown RBP13.46□□□□□ -0.25
LINCMD1-201ENST00000418518 CDC42BPAQ5VT25 1732 aa13.44□□□□□ -0.26
LINCMD1-201ENST00000418518 CROCC2H7BZ55 1655 aa13.44□□□□□ -0.26
LINCMD1-201ENST00000418518 CDK11AQ9UQ88 783 aaPredicted RBP13.43□□□□□ -0.26
LINCMD1-201ENST00000418518 ATP10BO94823 1461 aa13.42□□□□□ -0.26
LINCMD1-201ENST00000418518 NAIPQ13075 1403 aa13.42□□□□□ -0.26
LINCMD1-201ENST00000418518 ABCC10Q5T3U5 1492 aa13.42□□□□□ -0.26
LINCMD1-201ENST00000418518 ADGBQ8N7X0 1667 aa13.41□□□□□ -0.26
LINCMD1-201ENST00000418518 PTPRGP23470 1445 aa13.41□□□□□ -0.26
LINCMD1-201ENST00000418518 ERCC6L2Q5T890 1561 aa13.41□□□□□ -0.26
LINCMD1-201ENST00000418518 ABCC2Q92887 1545 aa13.4□□□□□ -0.26
LINCMD1-201ENST00000418518 ITGAEP38570 1179 aa13.4□□□□□ -0.26
LINCMD1-201ENST00000418518 GPATCH8Q9UKJ3 1502 aaKnown RBP13.39□□□□□ -0.27
LINCMD1-201ENST00000418518 UACAQ9BZF9 1416 aa13.38□□□□□ -0.27
LINCMD1-201ENST00000418518 UHRF1BP1LA0JNW5 1464 aa13.37□□□□□ -0.27
LINCMD1-201ENST00000418518 ROCK1Q13464 1354 aa13.37□□□□□ -0.27
LINCMD1-201ENST00000418518 DAPK1P53355 1430 aa13.37□□□□□ -0.27
LINCMD1-201ENST00000418518 CAMSAP2Q08AD1 1489 aa13.36□□□□□ -0.27
LINCMD1-201ENST00000418518 PREX2Q70Z35 1606 aa13.36□□□□□ -0.27
LINCMD1-201ENST00000418518 CDC42BPBQ9Y5S2 1711 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms