RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 MAGI1Q96QZ7 1491 aaPredicted RBP12.6□□□□□ -0.39
USP54-203ENST00000418501 TARBP1Q13395 1621 aaKnown RBP12.6□□□□□ -0.39
USP54-203ENST00000418501 AQRO60306 1485 aaKnown RBP eCLIP12.6□□□□□ -0.39
USP54-203ENST00000418501 FBLN2P98095 1184 aa12.6□□□□□ -0.39
USP54-203ENST00000418501 CDK11AQ9UQ88 783 aaPredicted RBP12.58□□□□□ -0.4
USP54-203ENST00000418501 ARHGAP35Q9NRY4 1499 aa12.57□□□□□ -0.4
USP54-203ENST00000418501 ARAP1Q96P48 1450 aa12.56□□□□□ -0.4
USP54-203ENST00000418501 CARMIL2Q6F5E8 1435 aa12.56□□□□□ -0.4
USP54-203ENST00000418501 P3H3Q8IVL6 736 aa12.56□□□□□ -0.4
USP54-203ENST00000418501 CCER1Q8TC90 406 aaPredicted RBP12.55□□□□□ -0.4
USP54-203ENST00000418501 MAP3K1Q13233 1512 aa12.55□□□□□ -0.4
USP54-203ENST00000418501 ADAMTS12P58397 1594 aa12.53□□□□□ -0.4
USP54-203ENST00000418501 THOC2Q8NI27 1593 aaKnown RBP12.53□□□□□ -0.4
USP54-203ENST00000418501 CTTNBP2Q8WZ74 1663 aa12.53□□□□□ -0.4
USP54-203ENST00000418501 SYNJ2O15056 1496 aa12.53□□□□□ -0.4
USP54-203ENST00000418501 SNAPC4Q5SXM2 1469 aa12.53□□□□□ -0.4
USP54-203ENST00000418501 PBRM1Q86U86 1689 aa12.52□□□□□ -0.4
USP54-203ENST00000418501 KIAA0586Q9BVV6 1533 aa12.52□□□□□ -0.41
USP54-203ENST00000418501 FYCO1Q9BQS8 1478 aa12.52□□□□□ -0.41
USP54-203ENST00000418501 CASKIN1Q8WXD9 1431 aa12.51□□□□□ -0.41
USP54-203ENST00000418501 MTUS2Q5JR59 1369 aa12.5□□□□□ -0.41
USP54-203ENST00000418501 IQGAP2Q13576 1575 aa12.5□□□□□ -0.41
USP54-203ENST00000418501 FHOD3Q2V2M9 1422 aa12.49□□□□□ -0.41
USP54-203ENST00000418501 GRIN2AQ12879 1464 aa12.48□□□□□ -0.41
USP54-203ENST00000418501 CCDC18Q5T9S5 1454 aa12.47□□□□□ -0.41
USP54-203ENST00000418501 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.47□□□□□ -0.41
USP54-203ENST00000418501 HNRNPUL2Q1KMD3 747 aaKnown RBP12.47□□□□□ -0.41
USP54-203ENST00000418501 EIF4G3O43432 1585 aaKnown RBP12.47□□□□□ -0.41
USP54-203ENST00000418501 ZNF608Q9ULD9 1512 aaPredicted RBP12.47□□□□□ -0.41
USP54-203ENST00000418501 ACIN1Q9UKV3 1341 aaKnown RBP12.47□□□□□ -0.41
USP54-203ENST00000418501 CCNB3Q8WWL7 1395 aa12.42□□□□□ -0.42
USP54-203ENST00000418501 UGGT2Q9NYU1 1516 aa12.42□□□□□ -0.42
USP54-203ENST00000418501 TIAM1Q13009 1591 aa12.42□□□□□ -0.42
USP54-203ENST00000418501 JPH4Q96JJ6 628 aa12.41□□□□□ -0.42
USP54-203ENST00000418501 FAM50AQ14320 339 aaKnown RBP12.41□□□□□ -0.42
USP54-203ENST00000418501 LRRC9Q6ZRR7 1453 aa12.4□□□□□ -0.42
USP54-203ENST00000418501 HECW1Q76N89 1606 aa12.4□□□□□ -0.42
USP54-203ENST00000418501 SAMD9Q5K651 1589 aa12.39□□□□□ -0.43
USP54-203ENST00000418501 KANK4Q5T7N3 995 aaPredicted RBP12.37□□□□□ -0.43
USP54-203ENST00000418501 NUP160Q12769 1436 aa12.36□□□□□ -0.43
USP54-203ENST00000418501 PCF11O94913 1555 aaKnown RBP12.36□□□□□ -0.43
USP54-203ENST00000418501 CLSPNQ9HAW4 1339 aa12.36□□□□□ -0.43
USP54-203ENST00000418501 RRBP1Q9P2E9 1410 aaKnown RBP12.35□□□□□ -0.43
USP54-203ENST00000418501 EHBP1L1Q8N3D4 1523 aa12.35□□□□□ -0.43
USP54-203ENST00000418501 PLEKHD1A6NEE1 506 aa12.34□□□□□ -0.43
USP54-203ENST00000418501 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.33□□□□□ -0.44
USP54-203ENST00000418501 ITGAEP38570 1179 aa12.33□□□□□ -0.44
USP54-203ENST00000418501 CFAP43Q8NDM7 1665 aa12.32□□□□□ -0.44
USP54-203ENST00000418501 PTPRGP23470 1445 aa12.31□□□□□ -0.44
USP54-203ENST00000418501 KIAA0556O60303 1618 aa12.3□□□□□ -0.44
USP54-203ENST00000418501 PRG4Q92954 1404 aaPredicted RBP12.27□□□□□ -0.44
USP54-203ENST00000418501 EPRSP07814 1512 aaKnown RBP12.27□□□□□ -0.45
USP54-203ENST00000418501 SUPT6HQ7KZ85 1726 aaKnown RBP12.27□□□□□ -0.45
USP54-203ENST00000418501 MYOM3Q5VTT5 1437 aa12.26□□□□□ -0.45
USP54-203ENST00000418501 MIA2Q96PC5 1412 aa12.25□□□□□ -0.45
USP54-203ENST00000418501 CEP170Q5SW79 1584 aa12.25□□□□□ -0.45
USP54-203ENST00000418501 FGD6Q6ZV73 1430 aa12.24□□□□□ -0.45
USP54-203ENST00000418501 NCOA2Q15596 1464 aa12.24□□□□□ -0.45
USP54-203ENST00000418501 DISP1Q96F81 1524 aa12.24□□□□□ -0.45
USP54-203ENST00000418501 NPM1P06748 294 aaKnown RBP eCLIP12.23□□□□□ -0.45
USP54-203ENST00000418501 SETD5Q9C0A6 1442 aa12.23□□□□□ -0.45
USP54-203ENST00000418501 RAPGEF6Q8TEU7 1601 aa12.23□□□□□ -0.45
USP54-203ENST00000418501 PHLDB1Q86UU1 1377 aa12.21□□□□□ -0.45
USP54-203ENST00000418501 ARID3CA6NKF2 412 aa12.21□□□□□ -0.45
USP54-203ENST00000418501 TROQ12816 1431 aaPredicted RBP12.21□□□□□ -0.45
USP54-203ENST00000418501 CFDP1Q9UEE9 299 aaPredicted RBP12.21□□□□□ -0.45
USP54-203ENST00000418501 OSCARQ8IYS5 282 aa12.21□□□□□ -0.46
USP54-203ENST00000418501 UACAQ9BZF9 1416 aa12.18□□□□□ -0.46
USP54-203ENST00000418501 RSPH4AQ5TD94 716 aa12.18□□□□□ -0.46
USP54-203ENST00000418501 TSPY4P0CV99 314 aa12.16□□□□□ -0.46
USP54-203ENST00000418501 TSPY10P0CW01 314 aa12.16□□□□□ -0.46
USP54-203ENST00000418501 TIMELESSQ9UNS1 1208 aa12.16□□□□□ -0.46
USP54-203ENST00000418501 NUP153P49790 1475 aaKnown RBP12.15□□□□□ -0.46
USP54-203ENST00000418501 ZNF777Q9ULD5 760 aaPredicted RBP12.14□□□□□ -0.47
USP54-203ENST00000418501 CDK13Q14004 1512 aaKnown RBP12.13□□□□□ -0.47
USP54-203ENST00000418501 TRIM52Q96A61 297 aa12.13□□□□□ -0.47
USP54-203ENST00000418501 CHD1O14646 1710 aa12.13□□□□□ -0.47
USP54-203ENST00000418501 RAB3GAP2Q9H2M9 1393 aa12.12□□□□□ -0.47
USP54-203ENST00000418501 PLB1Q6P1J6 1458 aa12.12□□□□□ -0.47
USP54-203ENST00000418501 KIF14Q15058 1648 aa12.11□□□□□ -0.47
USP54-203ENST00000418501 TCOF1Q13428 1488 aaKnown RBP12.1□□□□□ -0.47
USP54-203ENST00000418501 ABCA8O94911 1581 aa12.1□□□□□ -0.47
USP54-203ENST00000418501 AKNAQ7Z591 1439 aa12.1□□□□□ -0.47
USP54-203ENST00000418501 PLEKHH2Q8IVE3 1493 aa12.09□□□□□ -0.47
USP54-203ENST00000418501 PTPN23Q9H3S7 1636 aa12.09□□□□□ -0.47
USP54-203ENST00000418501 ITSN2Q9NZM3 1697 aa12.09□□□□□ -0.47
USP54-203ENST00000418501 ANKRD30AQ9BXX3 1397 aa12.09□□□□□ -0.47
USP54-203ENST00000418501 HFM1A2PYH4 1435 aa12.08□□□□□ -0.48
USP54-203ENST00000418501 ROCK1Q13464 1354 aa12.07□□□□□ -0.48
USP54-203ENST00000418501 DHX57Q6P158 1386 aaKnown RBP12.07□□□□□ -0.48
USP54-203ENST00000418501 EFCAB2Q5VUJ9 269 aa12.07□□□□□ -0.48
USP54-203ENST00000418501 UHRF1BP1LA0JNW5 1464 aa12.07□□□□□ -0.48
USP54-203ENST00000418501 ARHGEF11O15085 1522 aa12.07□□□□□ -0.48
USP54-203ENST00000418501 ABCC2Q92887 1545 aa12.07□□□□□ -0.48
USP54-203ENST00000418501 ATP10BO94823 1461 aa12.06□□□□□ -0.48
USP54-203ENST00000418501 SHROOM2Q13796 1616 aa12.06□□□□□ -0.48
USP54-203ENST00000418501 CHIC2Q9UKJ5 165 aa12.06□□□□□ -0.48
USP54-203ENST00000418501 CLASP1Q7Z460 1538 aa12.04□□□□□ -0.48
USP54-203ENST00000418501 RRP7BPQ9NSQ0 103 aa12.04□□□□□ -0.48
USP54-203ENST00000418501 ZNF316A6NFI3 1004 aaPredicted RBP12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms