RNA–Protein interactions for RNA: ENST00000417285.6

VEGFA-208, Transcript of vascular endothelial growth factor A, human

APPRIS ALT2 TSL 1 (best) BASIC

Gene VEGFA, Length 1,081 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VEGFA-208	ENST00000417285	CUL7	Q14999	1698 aa		43.64	■■■■■ 4.58
VEGFA-208	ENST00000417285	KIAA0586	Q9BVV6	1533 aa		43.62	■■■■■ 4.57
VEGFA-208	ENST00000417285	CARMIL1	Q5VZK9	1371 aa		43.61	■■■■■ 4.57
VEGFA-208	ENST00000417285	RUSC2	Q8N2Y8	1516 aa		43.61	■■■■■ 4.57
VEGFA-208	ENST00000417285	NPM1	P06748	294 aa	Known RBP eCLIP	43.38	■■■■■ 4.53
VEGFA-208	ENST00000417285	CARMIL2	Q6F5E8	1435 aa		43.22	■■■■■ 4.51
VEGFA-208	ENST00000417285	RAPGEF2	Q9Y4G8	1499 aa		43.2	■■■■■ 4.51
VEGFA-208	ENST00000417285	PTPRG	P23470	1445 aa		43.2	■■■■■ 4.51
VEGFA-208	ENST00000417285	IQGAP2	Q13576	1575 aa		43.13	■■■■■ 4.5
VEGFA-208	ENST00000417285	TNIK	Q9UKE5	1360 aa		43.13	■■■■■ 4.49
VEGFA-208	ENST00000417285	ADCY10	Q96PN6	1610 aa		43.09	■■■■■ 4.49
VEGFA-208	ENST00000417285	FAM69C	Q0P6D2	419 aa		43.07	■■■■■ 4.49
VEGFA-208	ENST00000417285	MAPKBP1	O60336	1514 aa		43.07	■■■■■ 4.48
VEGFA-208	ENST00000417285	TTBK1	Q5TCY1	1321 aa	Predicted RBP	43.03	■■■■■ 4.48
VEGFA-208	ENST00000417285	ABCC10	Q5T3U5	1492 aa		43.03	■■■■■ 4.48
VEGFA-208	ENST00000417285	KIF13A	Q9H1H9	1805 aa		42.95	■■■■■ 4.47
VEGFA-208	ENST00000417285	DISP1	Q96F81	1524 aa		42.92	■■■■■ 4.46
VEGFA-208	ENST00000417285	UGGT2	Q9NYU1	1516 aa		42.92	■■■■■ 4.46
VEGFA-208	ENST00000417285	ABCC2	Q92887	1545 aa		42.84	■■■■■ 4.45
VEGFA-208	ENST00000417285	UACA	Q9BZF9	1416 aa		42.84	■■■■■ 4.45
VEGFA-208	ENST00000417285	UHRF1BP1L	A0JNW5	1464 aa		42.83	■■■■■ 4.45
VEGFA-208	ENST00000417285	PRX	Q9BXM0	1461 aa		42.82	■■■■■ 4.45
VEGFA-208	ENST00000417285	DIP2B	Q9P265	1576 aa		42.8	■■■■■ 4.44
VEGFA-208	ENST00000417285	PLB1	Q6P1J6	1458 aa		42.7	■■■■■ 4.43
VEGFA-208	ENST00000417285	CSRNP3	Q8WYN3	585 aa		42.7	■■■■■ 4.43
VEGFA-208	ENST00000417285	KIAA0556	O60303	1618 aa		42.69	■■■■■ 4.42
VEGFA-208	ENST00000417285	GOLGA3	Q08378	1498 aa		42.68	■■■■■ 4.42
VEGFA-208	ENST00000417285	ASXL2	Q76L83	1435 aa		42.67	■■■■■ 4.42
VEGFA-208	ENST00000417285	AEBP2	Q6ZN18	517 aa	Predicted RBP	42.65	■■■■■ 4.42
VEGFA-208	ENST00000417285	CTTNBP2	Q8WZ74	1663 aa		42.62	■■■■■ 4.41
VEGFA-208	ENST00000417285	KDM5B	Q9UGL1	1544 aa		42.61	■■■■■ 4.41
VEGFA-208	ENST00000417285	FAM9A	Q8IZU1	332 aa	Predicted RBP	42.54	■■■■■ 4.4
VEGFA-208	ENST00000417285	EEA1	Q15075	1411 aa		42.52	■■■■■ 4.4
VEGFA-208	ENST00000417285	GLI2	P10070	1586 aa		42.49	■■■■■ 4.39
VEGFA-208	ENST00000417285	TSPOAP1	O95153	1857 aa		42.42	■■■■■ 4.38
VEGFA-208	ENST00000417285	EPRS	P07814	1512 aa	Known RBP	42.39	■■■■■ 4.38
VEGFA-208	ENST00000417285	ZCCHC11	Q5TAX3	1644 aa	Known RBP	42.38	■■■■■ 4.38
VEGFA-208	ENST00000417285	KDM6B	O15054	1643 aa		42.38	■■■■■ 4.37
VEGFA-208	ENST00000417285	ABCA8	O94911	1581 aa		42.32	■■■■■ 4.37
VEGFA-208	ENST00000417285	P3H3	Q8IVL6	736 aa		42.32	■■■■■ 4.37
VEGFA-208	ENST00000417285	WDR7	Q9Y4E6	1490 aa		42.29	■■■■■ 4.36
VEGFA-208	ENST00000417285	KCNH8	Q96L42	1107 aa		42.2	■■■■■ 4.35
VEGFA-208	ENST00000417285	TEX14	Q8IWB6	1497 aa		42.19	■■■■■ 4.34
VEGFA-208	ENST00000417285	MAP3K4	Q9Y6R4	1608 aa		42.18	■■■■■ 4.34
VEGFA-208	ENST00000417285	PPRC1	Q5VV67	1664 aa	Known RBP	42.18	■■■■■ 4.34
VEGFA-208	ENST00000417285	CHIC1	Q5VXU3	224 aa		42.12	■■■■■ 4.33
VEGFA-208	ENST00000417285	SAMD9	Q5K651	1589 aa		42.12	■■■■■ 4.33
VEGFA-208	ENST00000417285	RANGAP1	P46060	587 aa	Predicted RBP	42.07	■■■■■ 4.33
VEGFA-208	ENST00000417285	ATP10B	O94823	1461 aa		42.06	■■■■■ 4.32
VEGFA-208	ENST00000417285	CD109	Q6YHK3	1445 aa		42.06	■■■■■ 4.32
VEGFA-208	ENST00000417285	ARID3C	A6NKF2	412 aa		42.04	■■■■■ 4.32
VEGFA-208	ENST00000417285	COL17A1	Q9UMD9	1497 aa	Predicted RBP	42.01	■■■■■ 4.32
VEGFA-208	ENST00000417285	KIF21B	O75037	1637 aa		42	■■■■■ 4.31
VEGFA-208	ENST00000417285	MAGI3	Q5TCQ9	1506 aa		41.99	■■■■■ 4.31
VEGFA-208	ENST00000417285	KDM4F	A0A1W2PPD8	638 aa		41.95	■■■■■ 4.31
VEGFA-208	ENST00000417285	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	41.93	■■■■■ 4.3
VEGFA-208	ENST00000417285	HNRNPUL2	Q1KMD3	747 aa	Known RBP	41.93	■■■■■ 4.3
VEGFA-208	ENST00000417285	CFAP43	Q8NDM7	1665 aa		41.93	■■■■■ 4.3
VEGFA-208	ENST00000417285	FHOD3	Q2V2M9	1422 aa		41.9	■■■■■ 4.3
VEGFA-208	ENST00000417285	RAPGEF6	Q8TEU7	1601 aa		41.9	■■■■■ 4.3
VEGFA-208	ENST00000417285	UBTF	P17480	764 aa	Known RBP	41.88	■■■■■ 4.29
VEGFA-208	ENST00000417285	EFCAB5	A4FU69	1503 aa		41.83	■■■■■ 4.29
VEGFA-208	ENST00000417285	NUP153	P49790	1475 aa	Known RBP	41.81	■■■■■ 4.28
VEGFA-208	ENST00000417285	PLEKHD1	A6NEE1	506 aa		41.76	■■■■■ 4.28
VEGFA-208	ENST00000417285	EHMT2	Q96KQ7	1210 aa		41.75	■■■■■ 4.27
VEGFA-208	ENST00000417285	PHLDB1	Q86UU1	1377 aa		41.75	■■■■■ 4.27
VEGFA-208	ENST00000417285	ABCA9	Q8IUA7	1624 aa		41.69	■■■■■ 4.26
VEGFA-208	ENST00000417285	ARAP3	Q8WWN8	1544 aa		41.67	■■■■■ 4.26
VEGFA-208	ENST00000417285	ADGRL1	O94910	1474 aa		41.6	■■■■■ 4.25
VEGFA-208	ENST00000417285	NEO1	Q92859	1461 aa		41.56	■■■■■ 4.24
VEGFA-208	ENST00000417285	FMN1	Q68DA7	1419 aa		41.56	■■■■■ 4.24
VEGFA-208	ENST00000417285	ARHGAP35	Q9NRY4	1499 aa		41.49	■■■■■ 4.23
VEGFA-208	ENST00000417285	ATP1B4	Q9UN42	357 aa	Predicted RBP	41.48	■■■■■ 4.23
VEGFA-208	ENST00000417285	RAPGEF3	O95398	923 aa		41.45	■■■■■ 4.23
VEGFA-208	ENST00000417285	CDK11A	Q9UQ88	783 aa	Predicted RBP	41.42	■■■■■ 4.22
VEGFA-208	ENST00000417285	CDK13	Q14004	1512 aa	Known RBP	41.36	■■■■■ 4.21
VEGFA-208	ENST00000417285	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	41.34	■■■■■ 4.21	2e-6	■■□□□ 11.9
VEGFA-208	ENST00000417285	AKNA	Q7Z591	1439 aa		41.31	■■■■■ 4.2
VEGFA-208	ENST00000417285	HECW1	Q76N89	1606 aa		41.3	■■■■■ 4.2
VEGFA-208	ENST00000417285	FANCA	O15360	1455 aa		41.29	■■■■■ 4.2
VEGFA-208	ENST00000417285	DENND4B	O75064	1496 aa	Predicted RBP	41.27	■■■■■ 4.2
VEGFA-208	ENST00000417285	PLCH2	O75038	1416 aa		41.22	■■■■■ 4.19
VEGFA-208	ENST00000417285	TTC37	Q6PGP7	1564 aa		41.2	■■■■■ 4.19
VEGFA-208	ENST00000417285	CFAP74	Q9C0B2	1584 aa		41.2	■■■■■ 4.19
VEGFA-208	ENST00000417285	EFCAB2	Q5VUJ9	269 aa		41.15	■■■■■ 4.18
VEGFA-208	ENST00000417285	FRMPD1	Q5SYB0	1578 aa		41.15	■■■■■ 4.18
VEGFA-208	ENST00000417285	TRO	Q12816	1431 aa	Predicted RBP	41.13	■■■■■ 4.17
VEGFA-208	ENST00000417285	CASKIN1	Q8WXD9	1431 aa		41.11	■■■■■ 4.17
VEGFA-208	ENST00000417285	ARID4B	Q4LE39	1312 aa	Predicted RBP	41.11	■■■■■ 4.17
VEGFA-208	ENST00000417285	CLIP1	P30622	1438 aa		41.1	■■■■■ 4.17
VEGFA-208	ENST00000417285	SCAPER	Q9BY12	1400 aa		41.05	■■■■■ 4.16
VEGFA-208	ENST00000417285	RICTOR	Q6R327	1708 aa		41.03	■■■■■ 4.16
VEGFA-208	ENST00000417285	CCDC18	Q5T9S5	1454 aa		41.02	■■■■■ 4.16
VEGFA-208	ENST00000417285	MAGI2	Q86UL8	1455 aa		41.01	■■■■■ 4.16
VEGFA-208	ENST00000417285	KIF14	Q15058	1648 aa		41	■■■■■ 4.15
VEGFA-208	ENST00000417285	ZMYM4	Q5VZL5	1548 aa		40.97	■■■■■ 4.15
VEGFA-208	ENST00000417285	ARHGEF40	Q8TER5	1519 aa		40.96	■■■■■ 4.15
VEGFA-208	ENST00000417285	POGZ	Q7Z3K3	1410 aa		40.94	■■■■■ 4.14
VEGFA-208	ENST00000417285	ADAMTSL3	P82987	1691 aa		40.94	■■■■■ 4.14
VEGFA-208	ENST00000417285	MYO5C	Q9NQX4	1742 aa		40.93	■■■■■ 4.14

Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms