RNA–Protein interactions for RNA: ENST00000414861.6

RIF1-202, Transcript of replication timing regulatory factor 1, humanhuman

TSL 1 (best)

Gene RIF1, Length 2,534 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-202ENST00000414861 CHMP7Q8WUX9 453 aaPredicted RBP15.62■□□□□ 0.09
RIF1-202ENST00000414861 CEP170Q5SW79 1584 aa15.61■□□□□ 0.09
RIF1-202ENST00000414861 NUP160Q12769 1436 aa15.57■□□□□ 0.08
RIF1-202ENST00000414861 RANGAP1P46060 587 aaPredicted RBP15.57■□□□□ 0.08
RIF1-202ENST00000414861 CLIP1P30622 1438 aa15.56■□□□□ 0.08
RIF1-202ENST00000414861 IQGAP2Q13576 1575 aa15.55■□□□□ 0.08
RIF1-202ENST00000414861 KIAA0586Q9BVV6 1533 aa15.53■□□□□ 0.08
RIF1-202ENST00000414861 ARHGAP35Q9NRY4 1499 aa15.51■□□□□ 0.07
RIF1-202ENST00000414861 ARAP1Q96P48 1450 aa15.47■□□□□ 0.07
RIF1-202ENST00000414861 SAMD9Q5K651 1589 aa15.47■□□□□ 0.07
RIF1-202ENST00000414861 UGGT2Q9NYU1 1516 aa15.46■□□□□ 0.07
RIF1-202ENST00000414861 EFCAB5A4FU69 1503 aa15.46■□□□□ 0.06
RIF1-202ENST00000414861 CLASP1Q7Z460 1538 aa15.46■□□□□ 0.06
RIF1-202ENST00000414861 FHOD3Q2V2M9 1422 aa15.42■□□□□ 0.06
RIF1-202ENST00000414861 DISP1Q96F81 1524 aa15.42■□□□□ 0.06
RIF1-202ENST00000414861 P3H3Q8IVL6 736 aa15.42■□□□□ 0.06
RIF1-202ENST00000414861 SHROOM2Q13796 1616 aa15.41■□□□□ 0.06
RIF1-202ENST00000414861 KIAA0556O60303 1618 aa15.41■□□□□ 0.06
RIF1-202ENST00000414861 JPH4Q96JJ6 628 aa15.39■□□□□ 0.05
RIF1-202ENST00000414861 VPS8Q8N3P4 1428 aa15.38■□□□□ 0.05
RIF1-202ENST00000414861 OSCARQ8IYS5 282 aa15.35■□□□□ 0.05
RIF1-202ENST00000414861 ERCC6L2Q5T890 1561 aa15.35■□□□□ 0.05
RIF1-202ENST00000414861 PRG4Q92954 1404 aaPredicted RBP15.35■□□□□ 0.05
RIF1-202ENST00000414861 PCF11O94913 1555 aaKnown RBP15.32■□□□□ 0.04
RIF1-202ENST00000414861 CARMIL2Q6F5E8 1435 aa15.32■□□□□ 0.04
RIF1-202ENST00000414861 FMN1Q68DA7 1419 aa15.29■□□□□ 0.04
RIF1-202ENST00000414861 TTBK1Q5TCY1 1321 aaPredicted RBP15.27■□□□□ 0.04
RIF1-202ENST00000414861 CASKIN1Q8WXD9 1431 aa15.25■□□□□ 0.03
RIF1-202ENST00000414861 FYCO1Q9BQS8 1478 aa15.25■□□□□ 0.03
RIF1-202ENST00000414861 LRRIQ1Q96JM4 1722 aa15.24■□□□□ 0.03
RIF1-202ENST00000414861 PLB1Q6P1J6 1458 aa15.22■□□□□ 0.03
RIF1-202ENST00000414861 RAPGEF6Q8TEU7 1601 aa15.22■□□□□ 0.03
RIF1-202ENST00000414861 PTPRGP23470 1445 aa15.21■□□□□ 0.03
RIF1-202ENST00000414861 HECW1Q76N89 1606 aa15.2■□□□□ 0.02
RIF1-202ENST00000414861 ABCA8O94911 1581 aa15.19■□□□□ 0.02
RIF1-202ENST00000414861 PPARGC1BQ86YN6 1023 aaKnown RBP15.19■□□□□ 0.02
RIF1-202ENST00000414861 CFAP43Q8NDM7 1665 aa15.19■□□□□ 0.02
RIF1-202ENST00000414861 ATP1B4Q9UN42 357 aaPredicted RBP15.18■□□□□ 0.02
RIF1-202ENST00000414861 TIAM1Q13009 1591 aa15.18■□□□□ 0.02
RIF1-202ENST00000414861 NUP153P49790 1475 aaKnown RBP15.18■□□□□ 0.02
RIF1-202ENST00000414861 ARHGEF11O15085 1522 aa15.17■□□□□ 0.02
RIF1-202ENST00000414861 CDK13Q14004 1512 aaKnown RBP15.15■□□□□ 0.02
RIF1-202ENST00000414861 EPRSP07814 1512 aaKnown RBP15.14■□□□□ 0.01
RIF1-202ENST00000414861 MAP3K1Q13233 1512 aa15.14■□□□□ 0.01
RIF1-202ENST00000414861 ARID3CA6NKF2 412 aa15.14■□□□□ 0.01
RIF1-202ENST00000414861 APLP2Q06481 763 aa15.13■□□□□ 0.01
RIF1-202ENST00000414861 RIMBP3CA6NJZ7 1639 aa15.13■□□□□ 0.01
RIF1-202ENST00000414861 RIMBP3BA6NNM3 1639 aa15.13■□□□□ 0.01
RIF1-202ENST00000414861 RIMBP3Q9UFD9 1639 aa15.13■□□□□ 0.01
RIF1-202ENST00000414861 KANK4Q5T7N3 995 aaPredicted RBP15.12■□□□□ 0.01
RIF1-202ENST00000414861 UACAQ9BZF9 1416 aa15.12■□□□□ 0.01
RIF1-202ENST00000414861 CCDC18Q5T9S5 1454 aa15.12■□□□□ 0.01
RIF1-202ENST00000414861 ABCC2Q92887 1545 aa15.11■□□□□ 0.01
RIF1-202ENST00000414861 MAGI3Q5TCQ9 1506 aa15.09■□□□□ 0.01
RIF1-202ENST00000414861 ADCY10Q96PN6 1610 aa15.09■□□□□ 0.01
RIF1-202ENST00000414861 LRRC9Q6ZRR7 1453 aa15.09■□□□□ 0.01
RIF1-202ENST00000414861 UHRF1BP1LA0JNW5 1464 aa15.07■□□□□ 0
RIF1-202ENST00000414861 ATP10BO94823 1461 aa15.07■□□□□ 0
RIF1-202ENST00000414861 EHBP1L1Q8N3D4 1523 aa15.03■□□□□ -0
RIF1-202ENST00000414861 ZCCHC11Q5TAX3 1644 aaKnown RBP15.03■□□□□ -0
RIF1-202ENST00000414861 MTUS2Q5JR59 1369 aa15.03■□□□□ -0
RIF1-202ENST00000414861 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.02□□□□□ -0.01
RIF1-202ENST00000414861 HNRNPUL2Q1KMD3 747 aaKnown RBP15.02□□□□□ -0.01
RIF1-202ENST00000414861 KDM5BQ9UGL1 1544 aa15.02□□□□□ -0.01
RIF1-202ENST00000414861 SUPT6HQ7KZ85 1726 aaKnown RBP14.99□□□□□ -0.01
RIF1-202ENST00000414861 CYB5RLQ6IPT4 315 aa14.98□□□□□ -0.01
RIF1-202ENST00000414861 TROQ12816 1431 aaPredicted RBP14.97□□□□□ -0.01
RIF1-202ENST00000414861 KIF14Q15058 1648 aa14.97□□□□□ -0.01
RIF1-202ENST00000414861 NCOA2Q15596 1464 aa14.96□□□□□ -0.01
RIF1-202ENST00000414861 PHLDB1Q86UU1 1377 aa14.96□□□□□ -0.02
RIF1-202ENST00000414861 CDK11AQ9UQ88 783 aaPredicted RBP14.95□□□□□ -0.02
RIF1-202ENST00000414861 PLEKHD1A6NEE1 506 aa14.92□□□□□ -0.02
RIF1-202ENST00000414861 TRIM26Q12899 539 aaPredicted RBP14.91□□□□□ -0.02
RIF1-202ENST00000414861 WDR7Q9Y4E6 1490 aa14.89□□□□□ -0.03
RIF1-202ENST00000414861 ASXL2Q76L83 1435 aa14.89□□□□□ -0.03
RIF1-202ENST00000414861 ABCC10Q5T3U5 1492 aa14.88□□□□□ -0.03
RIF1-202ENST00000414861 RRBP1Q9P2E9 1410 aaKnown RBP14.88□□□□□ -0.03
RIF1-202ENST00000414861 MYOM3Q5VTT5 1437 aa14.87□□□□□ -0.03
RIF1-202ENST00000414861 TTC37Q6PGP7 1564 aa14.87□□□□□ -0.03
RIF1-202ENST00000414861 PCGF6Q9BYE7 350 aa14.86□□□□□ -0.03
RIF1-202ENST00000414861 CDC42BPAQ5VT25 1732 aa14.86□□□□□ -0.03
RIF1-202ENST00000414861 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.86□□□□□ -0.032e-6■■□□□ 11.5
RIF1-202ENST00000414861 NPM1P06748 294 aaKnown RBP eCLIP14.86□□□□□ -0.03
RIF1-202ENST00000414861 FGD6Q6ZV73 1430 aa14.86□□□□□ -0.03
RIF1-202ENST00000414861 DNAJC5Q9H3Z4 198 aa14.85□□□□□ -0.03
RIF1-202ENST00000414861 MAPKBP1O60336 1514 aa14.84□□□□□ -0.03
RIF1-202ENST00000414861 KCNH8Q96L42 1107 aa14.84□□□□□ -0.03
RIF1-202ENST00000414861 CCNB3Q8WWL7 1395 aa14.84□□□□□ -0.03
RIF1-202ENST00000414861 ITSN2Q9NZM3 1697 aa14.84□□□□□ -0.03
RIF1-202ENST00000414861 GPATCH8Q9UKJ3 1502 aaKnown RBP14.83□□□□□ -0.04
RIF1-202ENST00000414861 PTPN23Q9H3S7 1636 aa14.81□□□□□ -0.04
RIF1-202ENST00000414861 PREX2Q70Z35 1606 aa14.81□□□□□ -0.04
RIF1-202ENST00000414861 MYO5CQ9NQX4 1742 aa14.81□□□□□ -0.04
RIF1-202ENST00000414861 CDC42BPBQ9Y5S2 1711 aa14.81□□□□□ -0.04
RIF1-202ENST00000414861 ABCA9Q8IUA7 1624 aa14.79□□□□□ -0.04
RIF1-202ENST00000414861 MIA2Q96PC5 1412 aa14.79□□□□□ -0.04
RIF1-202ENST00000414861 TCOF1Q13428 1488 aaKnown RBP14.77□□□□□ -0.04
RIF1-202ENST00000414861 FAM50AQ14320 339 aaKnown RBP14.77□□□□□ -0.05
RIF1-202ENST00000414861 ZNF644Q9H582 1327 aaPredicted RBP14.75□□□□□ -0.05
RIF1-202ENST00000414861 CFDP1Q9UEE9 299 aaPredicted RBP14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms