RNA–Protein interactions for RNA: ENST00000411220.1

RNU4-88P-201, Transcript of RNA, U4 small nuclear 88, pseudogene, humanhuman

BASIC

Gene RNU4-88P, Length 86 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-88P-201ENST00000411220 ATMINO43313 823 aaPredicted RBP3.89□□□□□ -1.79
RNU4-88P-201ENST00000411220 POTEB3A0JP26 581 aa3.88□□□□□ -1.79
RNU4-88P-201ENST00000411220 POTEBQ6S5H4 581 aa3.88□□□□□ -1.79
RNU4-88P-201ENST00000411220 FARP1Q9Y4F1 1045 aaPredicted RBP3.87□□□□□ -1.79
RNU4-88P-201ENST00000411220 SNPHO15079 494 aa3.86□□□□□ -1.79
RNU4-88P-201ENST00000411220 KRTAP9-2Q9BYQ4 174 aa3.86□□□□□ -1.79
RNU4-88P-201ENST00000411220 POTEFA5A3E0 1075 aa3.85□□□□□ -1.79
RNU4-88P-201ENST00000411220 RGS20O76081 388 aa3.85□□□□□ -1.79
RNU4-88P-201ENST00000411220 KRTAP9-6A0A140TA67 174 aa3.84□□□□□ -1.79
RNU4-88P-201ENST00000411220 FAM205CA6NFA0 338 aa3.84□□□□□ -1.79
RNU4-88P-201ENST00000411220 SAMD1Q6SPF0 538 aaPredicted RBP3.83□□□□□ -1.8
RNU4-88P-201ENST00000411220 KRTAP17-1Q9BYP8 105 aa3.83□□□□□ -1.8
RNU4-88P-201ENST00000411220 ATF5Q9Y2D1 282 aaPredicted RBP3.83□□□□□ -1.8
RNU4-88P-201ENST00000411220 PTGER2P43116 358 aa3.78□□□□□ -1.8
RNU4-88P-201ENST00000411220 ZNF775Q96BV0 537 aaPredicted RBP3.77□□□□□ -1.81
RNU4-88P-201ENST00000411220 PRR29P0C7W0 189 aa3.74□□□□□ -1.81
RNU4-88P-201ENST00000411220 PHF12Q96QT6 1004 aa3.74□□□□□ -1.81
RNU4-88P-201ENST00000411220 KRTAP4-8A0A0G2JLE6 195 aa3.73□□□□□ -1.81
RNU4-88P-201ENST00000411220 XP32Q5T750 250 aa3.73□□□□□ -1.81
RNU4-88P-201ENST00000411220 ATN1P54259 1190 aaPredicted RBP3.72□□□□□ -1.81
RNU4-88P-201ENST00000411220 LCE3BQ5TA77 95 aa3.7□□□□□ -1.82
RNU4-88P-201ENST00000411220 PSMG3-AS1Q96PY0 264 aa3.7□□□□□ -1.82
RNU4-88P-201ENST00000411220 STK17AQ9UEE5 414 aa3.7□□□□□ -1.82
RNU4-88P-201ENST00000411220 BTBD11A6QL63 1104 aa3.69□□□□□ -1.82
RNU4-88P-201ENST00000411220 SEC24BO95487 1268 aa3.69□□□□□ -1.82
RNU4-88P-201ENST00000411220 TRAF7Q6Q0C0 670 aa3.68□□□□□ -1.82
RNU4-88P-201ENST00000411220 COLQQ9Y215 455 aaPredicted RBP3.68□□□□□ -1.82
RNU4-88P-201ENST00000411220 LCE2BO14633 110 aa3.67□□□□□ -1.82
RNU4-88P-201ENST00000411220 SPDYE2BA6NHP3 402 aa3.65□□□□□ -1.83
RNU4-88P-201ENST00000411220 SPDYE6P0CI01 402 aa3.65□□□□□ -1.83
RNU4-88P-201ENST00000411220 SPDYE2Q495Y8 402 aa3.65□□□□□ -1.83
RNU4-88P-201ENST00000411220 ZNF787Q6DD87 383 aa3.65□□□□□ -1.83
RNU4-88P-201ENST00000411220 MS4A3Q96HJ5 214 aa3.65□□□□□ -1.83
RNU4-88P-201ENST00000411220 KRTAP9-9Q9BYP9 154 aa3.65□□□□□ -1.83
RNU4-88P-201ENST00000411220 KRTAP9-8Q9BYQ0 159 aa3.65□□□□□ -1.83
RNU4-88P-201ENST00000411220 KRTAP9-4Q9BYQ2 154 aa3.65□□□□□ -1.83
RNU4-88P-201ENST00000411220 KRTAP4-7Q9BYR0 210 aa3.65□□□□□ -1.83
RNU4-88P-201ENST00000411220 HCSTQ9UBK5 93 aa3.65□□□□□ -1.83
RNU4-88P-201ENST00000411220 PAK3O75914 559 aaPredicted RBP3.63□□□□□ -1.83
RNU4-88P-201ENST00000411220 KRTAP5-3Q6L8H2 238 aa3.63□□□□□ -1.83
RNU4-88P-201ENST00000411220 ANO8Q9HCE9 1232 aaPredicted RBP3.63□□□□□ -1.83
RNU4-88P-201ENST00000411220 LAPTM4AQ15012 233 aa3.57□□□□□ -1.84
RNU4-88P-201ENST00000411220 SLC4A2P04920 1241 aa3.54□□□□□ -1.84
RNU4-88P-201ENST00000411220 KRTAP4-2Q9BYR5 136 aa3.51□□□□□ -1.85
RNU4-88P-201ENST00000411220 BMP2KQ9NSY1 1161 aaPredicted RBP3.51□□□□□ -1.85
RNU4-88P-201ENST00000411220 ERBB3P21860 1342 aa3.5□□□□□ -1.85
RNU4-88P-201ENST00000411220 TREML4Q6UXN2 200 aa3.49□□□□□ -1.85
RNU4-88P-201ENST00000411220 EIF2AK3Q9NZJ5 1116 aaKnown RBP3.49□□□□□ -1.85
RNU4-88P-201ENST00000411220 A0A0G2JS52 829 aa3.48□□□□□ -1.85
RNU4-88P-201ENST00000411220 IER5LQ5T953 404 aa3.48□□□□□ -1.85
RNU4-88P-201ENST00000411220 LCE2AQ5TA79 106 aaPredicted RBP3.48□□□□□ -1.85
RNU4-88P-201ENST00000411220 INSM1Q01101 510 aaPredicted RBP3.46□□□□□ -1.86
RNU4-88P-201ENST00000411220 IFFO2Q5TF58 517 aa3.46□□□□□ -1.86
RNU4-88P-201ENST00000411220 ANKRD13DQ6ZTN6 518 aa3.46□□□□□ -1.86
RNU4-88P-201ENST00000411220 KRTAP4-12Q9BQ66 201 aa3.46□□□□□ -1.86
RNU4-88P-201ENST00000411220 NCBP3Q53F19 620 aaKnown RBP3.43□□□□□ -1.86
RNU4-88P-201ENST00000411220 LCE1DQ5T752 114 aa3.43□□□□□ -1.86
RNU4-88P-201ENST00000411220 ZNF687Q8N1G0 1237 aa3.42□□□□□ -1.86
RNU4-88P-201ENST00000411220 KRTAP4-9Q9BYQ8 210 aa3.42□□□□□ -1.86
RNU4-88P-201ENST00000411220 SSUH2Q9Y2M2 353 aa3.42□□□□□ -1.86
RNU4-88P-201ENST00000411220 TIE1P35590 1138 aa3.41□□□□□ -1.86
RNU4-88P-201ENST00000411220 VARS2Q5ST30 1063 aaKnown RBP3.41□□□□□ -1.86
RNU4-88P-201ENST00000411220 GFRA3O60609 400 aa3.39□□□□□ -1.87
RNU4-88P-201ENST00000411220 PLCG2P16885 1265 aa3.38□□□□□ -1.87
RNU4-88P-201ENST00000411220 HOXB1P14653 301 aaPredicted RBP3.37□□□□□ -1.87
RNU4-88P-201ENST00000411220 ZNF692Q9BU19 519 aaPredicted RBP3.37□□□□□ -1.87
RNU4-88P-201ENST00000411220 FAM181BA6NEQ2 426 aa3.35□□□□□ -1.87
RNU4-88P-201ENST00000411220 TTLL13PA6NNM8 815 aa3.34□□□□□ -1.87
RNU4-88P-201ENST00000411220 WIPF1O43516 503 aa3.34□□□□□ -1.87
RNU4-88P-201ENST00000411220 TRPC6Q9Y210 931 aa3.34□□□□□ -1.87
RNU4-88P-201ENST00000411220 NPM3O75607 178 aaKnown RBP3.33□□□□□ -1.88
RNU4-88P-201ENST00000411220 TRIM35Q9UPQ4 493 aa3.33□□□□□ -1.88
RNU4-88P-201ENST00000411220 LSM11P83369 360 aaKnown RBP eCLIP3.32□□□□□ -1.88
RNU4-88P-201ENST00000411220 NRG2O14511 850 aaPredicted RBP3.3□□□□□ -1.88
RNU4-88P-201ENST00000411220 WFS1O76024 890 aa3.28□□□□□ -1.88
RNU4-88P-201ENST00000411220 LORP23490 312 aaPredicted RBP3.28□□□□□ -1.88
RNU4-88P-201ENST00000411220 ZNF710Q8N1W2 664 aa3.28□□□□□ -1.88
RNU4-88P-201ENST00000411220 KCTD17Q8N5Z5 321 aa3.27□□□□□ -1.89
RNU4-88P-201ENST00000411220 C3orf67Q6ZVT6 689 aa3.26□□□□□ -1.89
RNU4-88P-201ENST00000411220 PABPN1Q86U42 306 aaKnown RBP eCLIP3.26□□□□□ -1.89
RNU4-88P-201ENST00000411220 CREBZFQ9NS37 354 aa3.26□□□□□ -1.89
RNU4-88P-201ENST00000411220 KRTAP4-5Q9BYR2 181 aa3.25□□□□□ -1.89
RNU4-88P-201ENST00000411220 HOXB3P14651 431 aaPredicted RBP3.23□□□□□ -1.89
RNU4-88P-201ENST00000411220 IRX5P78411 483 aaPredicted RBP3.23□□□□□ -1.89
RNU4-88P-201ENST00000411220 NPM1P06748 294 aaKnown RBP eCLIP3.21□□□□□ -1.9
RNU4-88P-201ENST00000411220 KIF12Q96FN5 646 aa3.21□□□□□ -1.9
RNU4-88P-201ENST00000411220 FBLN2P98095 1184 aa3.19□□□□□ -1.9
RNU4-88P-201ENST00000411220 KRTAP19-1Q8IUB9 90 aa3.19□□□□□ -1.9
RNU4-88P-201ENST00000411220 KRTAP4-11Q9BYQ6 195 aa3.19□□□□□ -1.9
RNU4-88P-201ENST00000411220 OCEL1Q9H607 264 aa3.19□□□□□ -1.9
RNU4-88P-201ENST00000411220 POTECB2RU33 542 aa3.18□□□□□ -1.9
RNU4-88P-201ENST00000411220 LAMC2Q13753 1193 aa3.17□□□□□ -1.9
RNU4-88P-201ENST00000411220 DOK7Q18PE1 504 aa3.16□□□□□ -1.9
RNU4-88P-201ENST00000411220 KCTD12Q96CX2 325 aaKnown RBP3.16□□□□□ -1.9
RNU4-88P-201ENST00000411220 MYCNP04198 464 aaPredicted RBP3.15□□□□□ -1.91
RNU4-88P-201ENST00000411220 ARID1BQ8NFD5 2236 aaPredicted RBP3.14□□□□□ -1.91
RNU4-88P-201ENST00000411220 RIMBP2O15034 1052 aa3.13□□□□□ -1.91
RNU4-88P-201ENST00000411220 CCDC61Q9Y6R9 512 aa3.13□□□□□ -1.91
RNU4-88P-201ENST00000411220 NFX1Q12986 1120 aaKnown RBP3.12□□□□□ -1.91
RNU4-88P-201ENST00000411220 MAP3K13O43283 966 aa3.11□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms