RNA–Protein interactions for RNA: ENST00000409958.6

VSX1-204, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best)

Gene VSX1, Length 1,305 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-204ENST00000409958 JPH4Q96JJ6 628 aa34.97■■■■□ 3.19
VSX1-204ENST00000409958 ERCC6L2Q5T890 1561 aa34.97■■■■□ 3.19
VSX1-204ENST00000409958 RAPGEF2Q9Y4G8 1499 aa34.96■■■■□ 3.19
VSX1-204ENST00000409958 CHIC1Q5VXU3 224 aa34.92■■■■□ 3.18
VSX1-204ENST00000409958 PRG4Q92954 1404 aaPredicted RBP34.89■■■■□ 3.18
VSX1-204ENST00000409958 PRXQ9BXM0 1461 aa34.83■■■■□ 3.17
VSX1-204ENST00000409958 EEA1Q15075 1411 aa34.83■■■■□ 3.17
VSX1-204ENST00000409958 CSRNP3Q8WYN3 585 aa34.79■■■■□ 3.16
VSX1-204ENST00000409958 IQGAP2Q13576 1575 aa34.74■■■■□ 3.15
VSX1-204ENST00000409958 FAM9AQ8IZU1 332 aaPredicted RBP34.6■■■■□ 3.13
VSX1-204ENST00000409958 CARMIL2Q6F5E8 1435 aa34.6■■■■□ 3.13
VSX1-204ENST00000409958 CTTNBP2Q8WZ74 1663 aa34.58■■■■□ 3.13
VSX1-204ENST00000409958 UGGT2Q9NYU1 1516 aa34.57■■■■□ 3.12
VSX1-204ENST00000409958 TRHP20396 242 aaPredicted RBP34.53■■■■□ 3.12
VSX1-204ENST00000409958 DISP1Q96F81 1524 aa34.51■■■■□ 3.12
VSX1-204ENST00000409958 TNIKQ9UKE5 1360 aa34.5■■■■□ 3.11
VSX1-204ENST00000409958 PTPRGP23470 1445 aa34.47■■■■□ 3.11
VSX1-204ENST00000409958 KIF21BO75037 1637 aa34.44■■■■□ 3.1
VSX1-204ENST00000409958 KIAA0556O60303 1618 aa34.41■■■■□ 3.1
VSX1-204ENST00000409958 GOLGA3Q08378 1498 aa34.39■■■■□ 3.1
VSX1-204ENST00000409958 TTBK1Q5TCY1 1321 aaPredicted RBP34.36■■■■□ 3.09
VSX1-204ENST00000409958 ADCY10Q96PN6 1610 aa34.35■■■■□ 3.09
VSX1-204ENST00000409958 NPM1P06748 294 aaKnown RBP eCLIP34.3■■■■□ 3.08
VSX1-204ENST00000409958 UACAQ9BZF9 1416 aa34.24■■■■□ 3.07
VSX1-204ENST00000409958 UHRF1BP1LA0JNW5 1464 aa34.22■■■■□ 3.07
VSX1-204ENST00000409958 MAPKBP1O60336 1514 aa34.17■■■■□ 3.06
VSX1-204ENST00000409958 ABCC2Q92887 1545 aa34.17■■■■□ 3.06
VSX1-204ENST00000409958 SAMD9Q5K651 1589 aa34.17■■■■□ 3.06
VSX1-204ENST00000409958 UBTFP17480 764 aaKnown RBP34.15■■■■□ 3.06
VSX1-204ENST00000409958 EHMT2Q96KQ7 1210 aa34.13■■■■□ 3.05
VSX1-204ENST00000409958 P3H3Q8IVL6 736 aa34.11■■■■□ 3.05
VSX1-204ENST00000409958 PLB1Q6P1J6 1458 aa34.08■■■■□ 3.05
VSX1-204ENST00000409958 RANGAP1P46060 587 aaPredicted RBP34.07■■■■□ 3.05
VSX1-204ENST00000409958 ABCA8O94911 1581 aa34.06■■■■□ 3.04
VSX1-204ENST00000409958 KDM5BQ9UGL1 1544 aa34.06■■■■□ 3.04
VSX1-204ENST00000409958 ABCC10Q5T3U5 1492 aa34.03■■■■□ 3.04
VSX1-204ENST00000409958 EFCAB5A4FU69 1503 aa34.02■■■■□ 3.04
VSX1-204ENST00000409958 KIF13AQ9H1H9 1805 aa34.01■■■■□ 3.03
VSX1-204ENST00000409958 FHOD3Q2V2M9 1422 aa33.97■■■■□ 3.03
VSX1-204ENST00000409958 DIP2BQ9P265 1576 aa33.96■■■■□ 3.03
VSX1-204ENST00000409958 ASXL2Q76L83 1435 aa33.96■■■■□ 3.03
VSX1-204ENST00000409958 FAM69CQ0P6D2 419 aa33.95■■■■□ 3.03
VSX1-204ENST00000409958 ZCCHC11Q5TAX3 1644 aaKnown RBP33.95■■■■□ 3.02
VSX1-204ENST00000409958 RAPGEF6Q8TEU7 1601 aa33.85■■■■□ 3.01
VSX1-204ENST00000409958 ARHGAP35Q9NRY4 1499 aa33.83■■■■□ 3.01
VSX1-204ENST00000409958 ATP10BO94823 1461 aa33.78■■■■□ 3
VSX1-204ENST00000409958 WDR7Q9Y4E6 1490 aa33.78■■■■□ 3
VSX1-204ENST00000409958 GLI2P10070 1586 aa33.77■■■■□ 3
VSX1-204ENST00000409958 EPRSP07814 1512 aaKnown RBP33.76■■■□□ 2.99
VSX1-204ENST00000409958 NUP153P49790 1475 aaKnown RBP33.74■■■□□ 2.99
VSX1-204ENST00000409958 ARID3CA6NKF2 412 aa33.74■■■□□ 2.99
VSX1-204ENST00000409958 FMN1Q68DA7 1419 aa33.72■■■□□ 2.99
VSX1-204ENST00000409958 TSPOAP1O95153 1857 aa33.66■■■□□ 2.98
VSX1-204ENST00000409958 CLIP1P30622 1438 aa33.61■■■□□ 2.97
VSX1-204ENST00000409958 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP33.61■■■□□ 2.97
VSX1-204ENST00000409958 HNRNPUL2Q1KMD3 747 aaKnown RBP33.61■■■□□ 2.97
VSX1-204ENST00000409958 KCNH8Q96L42 1107 aa33.61■■■□□ 2.97
VSX1-204ENST00000409958 MAP3K4Q9Y6R4 1608 aa33.59■■■□□ 2.97
VSX1-204ENST00000409958 PPRC1Q5VV67 1664 aaKnown RBP33.54■■■□□ 2.96
VSX1-204ENST00000409958 HECW1Q76N89 1606 aa33.54■■■□□ 2.96
VSX1-204ENST00000409958 PLEKHD1A6NEE1 506 aa33.5■■■□□ 2.95
VSX1-204ENST00000409958 ATP1B4Q9UN42 357 aaPredicted RBP33.5■■■□□ 2.95
VSX1-204ENST00000409958 KDM6BO15054 1643 aa33.49■■■□□ 2.95
VSX1-204ENST00000409958 CFAP43Q8NDM7 1665 aa33.49■■■□□ 2.95
VSX1-204ENST00000409958 LOC105371045A0A1W2PR82 267 aa33.48■■■□□ 2.95
VSX1-204ENST00000409958 CDK13Q14004 1512 aaKnown RBP33.48■■■□□ 2.95
VSX1-204ENST00000409958 CD109Q6YHK3 1445 aa33.47■■■□□ 2.95
VSX1-204ENST00000409958 TEX14Q8IWB6 1497 aa33.47■■■□□ 2.95
VSX1-204ENST00000409958 CEP162Q5TB80 1403 aa33.45■■■□□ 2.95
VSX1-204ENST00000409958 CASKIN1Q8WXD9 1431 aa33.44■■■□□ 2.94
VSX1-204ENST00000409958 MAGI3Q5TCQ9 1506 aa33.43■■■□□ 2.94
VSX1-204ENST00000409958 ABCA9Q8IUA7 1624 aa33.41■■■□□ 2.94
VSX1-204ENST00000409958 PCF11O94913 1555 aaKnown RBP33.39■■■□□ 2.94
VSX1-204ENST00000409958 CDK11AQ9UQ88 783 aaPredicted RBP33.36■■■□□ 2.93
VSX1-204ENST00000409958 FYCO1Q9BQS8 1478 aa33.35■■■□□ 2.93
VSX1-204ENST00000409958 LRRIQ1Q96JM4 1722 aa33.32■■■□□ 2.92
VSX1-204ENST00000409958 CCDC18Q5T9S5 1454 aa33.31■■■□□ 2.92
VSX1-204ENST00000409958 COL17A1Q9UMD9 1497 aaPredicted RBP33.26■■■□□ 2.92
VSX1-204ENST00000409958 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP33.25■■■□□ 2.91
VSX1-204ENST00000409958 TROQ12816 1431 aaPredicted RBP33.24■■■□□ 2.91
VSX1-204ENST00000409958 PHLDB1Q86UU1 1377 aa33.2■■■□□ 2.91
VSX1-204ENST00000409958 TTC37Q6PGP7 1564 aa33.19■■■□□ 2.9
VSX1-204ENST00000409958 NEO1Q92859 1461 aa33.16■■■□□ 2.9
VSX1-204ENST00000409958 KIF14Q15058 1648 aa33.14■■■□□ 2.9
VSX1-204ENST00000409958 ARAP3Q8WWN8 1544 aa33.14■■■□□ 2.9
VSX1-204ENST00000409958 PLCH2O75038 1416 aa33.08■■■□□ 2.89
VSX1-204ENST00000409958 FANCAO15360 1455 aa33.07■■■□□ 2.88
VSX1-204ENST00000409958 VPS8Q8N3P4 1428 aa33.06■■■□□ 2.88
VSX1-204ENST00000409958 CFAP74Q9C0B2 1584 aa33.05■■■□□ 2.88
VSX1-204ENST00000409958 AKNAQ7Z591 1439 aa33.03■■■□□ 2.88
VSX1-204ENST00000409958 MYO5CQ9NQX4 1742 aa33.02■■■□□ 2.88
VSX1-204ENST00000409958 EFCAB2Q5VUJ9 269 aa32.97■■■□□ 2.87
VSX1-204ENST00000409958 MTUS2Q5JR59 1369 aa32.96■■■□□ 2.87
VSX1-204ENST00000409958 RAPGEF3O95398 923 aa32.95■■■□□ 2.86
VSX1-204ENST00000409958 AEBP2Q6ZN18 517 aaPredicted RBP32.95■■■□□ 2.86
VSX1-204ENST00000409958 DENND4BO75064 1496 aaPredicted RBP32.92■■■□□ 2.86
VSX1-204ENST00000409958 ARHGAP5Q13017 1502 aa32.9■■■□□ 2.86
VSX1-204ENST00000409958 ADGRL1O94910 1474 aa32.89■■■□□ 2.86
VSX1-204ENST00000409958 EHBP1L1Q8N3D4 1523 aa32.89■■■□□ 2.86
VSX1-204ENST00000409958 FRMPD1Q5SYB0 1578 aa32.89■■■□□ 2.86
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms